Wall clock time and date at job start Tue Mar 31 2020 20:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00163 * 2 1 4 4 H 1.48497 * 109.47116 * 274.69890 * 3 2 1 5 5 H 1.48501 * 109.47136 * 34.69700 * 3 2 1 6 6 H 1.48502 * 109.47024 * 154.69311 * 3 2 1 7 7 C 1.38810 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00055 * 194.88524 * 7 2 1 9 9 N 1.36938 * 119.99859 * 14.88912 * 7 2 1 10 10 C 1.47161 * 120.71338 * 25.34416 * 9 7 2 11 11 C 1.53887 * 108.03471 * 132.73564 * 10 9 7 12 12 H 1.08995 * 112.58536 * 182.22343 * 11 10 9 13 13 C 1.54544 * 107.83013 * 306.50966 * 11 10 9 14 14 C 1.54276 * 104.94799 * 89.00858 * 13 11 10 15 15 C 1.54797 * 104.72919 * 0.08588 * 14 13 11 16 16 H 1.08996 * 112.69019 * 146.64289 * 15 14 13 17 17 C 1.47172 * 120.70786 * 205.32971 * 9 7 2 18 18 N 1.48297 * 104.39962 * 24.61990 * 15 14 13 19 19 C 1.34785 * 128.07885 * 139.11841 * 18 15 14 20 20 O 1.21576 * 120.00407 * 175.42583 * 19 18 15 21 21 C 1.47633 * 119.99584 * 355.42994 * 19 18 15 22 22 C 1.39702 * 120.15595 * 40.84102 * 21 19 18 23 23 C 1.37792 * 119.89445 * 180.02562 * 22 21 19 24 24 C 1.38611 * 120.20309 * 0.02562 * 23 22 21 25 25 Cl 1.73603 * 119.84323 * 179.97438 * 24 23 22 26 26 C 1.38353 * 120.31204 * 0.02562 * 24 23 22 27 27 C 1.38250 * 120.10445 * 359.67992 * 26 24 23 28 28 F 1.35105 * 120.10381 * 180.29610 * 27 26 24 29 29 H 0.97009 * 119.99713 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.74827 * 13.10768 * 10 9 7 31 31 H 1.08994 * 109.75382 * 252.37372 * 10 9 7 32 32 H 1.08999 * 110.36713 * 207.90877 * 13 11 10 33 33 H 1.09007 * 110.36326 * 330.11011 * 13 11 10 34 34 H 1.08998 * 110.36734 * 118.90343 * 14 13 11 35 35 H 1.09003 * 110.36499 * 241.21457 * 14 13 11 36 36 H 1.09001 * 109.75332 * 107.63225 * 17 9 7 37 37 H 1.08997 * 109.78833 * 346.91649 * 17 9 7 38 38 H 1.08007 * 120.05277 * 359.97438 * 22 21 19 39 39 H 1.07998 * 119.89748 * 179.97438 * 23 22 21 40 40 H 1.08003 * 119.94928 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3984 2.1037 -1.3953 5 1 1.5009 2.6220 0.7970 6 1 3.5939 1.4135 0.5985 7 6 2.0102 -1.2021 0.0005 8 1 3.0630 -1.2178 0.2408 9 7 1.3600 -2.3683 -0.3037 10 6 0.1500 -2.3577 -1.1412 11 6 0.3027 -3.4516 -2.2128 12 1 -0.5410 -3.4830 -2.9021 13 6 1.6442 -3.2149 -2.9427 14 6 2.6867 -4.0063 -2.1260 15 6 1.8773 -4.6523 -0.9754 16 1 2.2681 -5.6265 -0.6818 17 6 1.8565 -3.6590 0.1998 18 7 0.4934 -4.7389 -1.5013 19 6 -0.3859 -5.7512 -1.3648 20 8 -1.5193 -5.6333 -1.7886 21 6 0.0273 -7.0032 -0.7005 22 6 0.8298 -6.9596 0.4422 23 6 1.2127 -8.1315 1.0576 24 6 0.8045 -9.3534 0.5461 25 17 1.2930 -10.8241 1.3285 26 6 0.0106 -9.4065 -0.5857 27 6 -0.3862 -8.2384 -1.2099 28 9 -1.1664 -8.2901 -2.3116 29 1 -0.4850 0.8401 -0.0004 30 1 0.0426 -1.3848 -1.6209 31 1 -0.7257 -2.5644 -0.5260 32 1 1.5932 -3.5955 -3.9629 33 1 1.8917 -2.1534 -2.9467 34 1 3.1483 -4.7760 -2.7445 35 1 3.4458 -3.3337 -1.7267 36 1 1.1941 -4.0285 0.9826 37 1 2.8641 -3.5372 0.5971 38 1 1.1503 -6.0089 0.8421 39 1 1.8335 -8.0978 1.9407 40 1 -0.3045 -10.3618 -0.9790 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017716486.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:39 Heat of formation + Delta-G solvation = -14.477115 kcal Electronic energy + Delta-G solvation = -27735.161551 eV Core-core repulsion = 23684.465667 eV Total energy + Delta-G solvation = -4050.695884 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.06455 -40.53441 -39.11204 -37.68570 -36.73276 -34.20686 -32.20668 -31.34120 -30.89565 -30.45368 -30.20045 -26.43350 -24.41883 -23.75747 -23.23400 -22.75562 -21.00041 -20.25830 -18.67516 -17.84700 -17.65959 -16.82949 -16.31080 -16.00264 -15.65071 -15.30103 -15.21518 -14.62896 -14.38229 -14.21906 -13.74146 -13.56645 -13.46022 -13.26184 -12.96631 -12.86248 -12.55216 -12.20582 -11.99854 -11.82194 -11.75097 -11.44976 -11.35544 -11.16414 -10.92258 -10.63531 -10.53758 -10.39378 -10.05579 -9.93572 -9.75554 -9.65564 -9.31125 -8.99874 -8.62064 -8.31875 -6.80917 -5.87596 -3.31692 0.39715 0.77114 1.62442 2.70418 3.11378 3.31010 3.37218 3.38565 3.40379 3.92548 4.33614 4.38698 4.43975 4.59760 4.81459 4.97278 5.12205 5.18539 5.25742 5.30065 5.45909 5.47904 5.62460 5.69003 5.71465 5.75371 5.79756 6.00941 6.08856 6.24565 6.29271 6.32347 6.36009 6.50055 6.55300 6.63133 6.88557 7.22750 7.51814 7.67233 7.94128 8.27748 8.38974 9.07400 9.69709 10.25394 11.20084 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.019418 B = 0.003295 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.643703 B = 8496.654395 C = 9184.612390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.004 3.996 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.070 0.930 9 N -0.586 5.586 10 C 0.172 3.828 11 C 0.106 3.894 12 H 0.090 0.910 13 C -0.113 4.113 14 C -0.110 4.110 15 C 0.097 3.903 16 H 0.090 0.910 17 C 0.135 3.865 18 N -0.596 5.596 19 C 0.571 3.429 20 O -0.535 6.535 21 C -0.147 4.147 22 C -0.051 4.051 23 C -0.125 4.125 24 C 0.007 3.993 25 Cl -0.056 7.056 26 C -0.156 4.156 27 C 0.162 3.838 28 F -0.115 7.115 29 H 0.256 0.744 30 H 0.098 0.902 31 H 0.026 0.974 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.019 0.981 37 H 0.067 0.933 38 H 0.156 0.844 39 H 0.148 0.852 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.355 -17.564 -0.604 18.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.735 3.265 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.088 0.912 9 N -0.309 5.309 10 C 0.046 3.954 11 C 0.002 3.998 12 H 0.108 0.892 13 C -0.151 4.151 14 C -0.148 4.148 15 C -0.008 4.008 16 H 0.108 0.892 17 C 0.007 3.993 18 N -0.328 5.328 19 C 0.359 3.641 20 O -0.413 6.413 21 C -0.151 4.151 22 C -0.070 4.070 23 C -0.144 4.144 24 C -0.021 4.021 25 Cl -0.027 7.027 26 C -0.176 4.176 27 C 0.141 3.859 28 F -0.093 7.093 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.037 0.963 37 H 0.085 0.915 38 H 0.174 0.826 39 H 0.165 0.835 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.581 -17.522 -0.777 18.128 hybrid contribution 0.239 0.648 0.011 0.691 sum 4.820 -16.874 -0.766 17.566 Atomic orbital electron populations 1.70014 1.05221 1.25686 1.53801 1.25044 0.95336 0.98403 1.00729 0.86238 0.79014 0.83638 0.77625 1.21417 1.21790 1.20407 1.19180 0.92003 0.84073 1.43108 0.91219 1.44055 1.29869 1.01026 1.55922 1.21338 0.88318 0.95965 0.89782 1.23331 0.97753 0.83043 0.95625 0.89240 1.22333 0.94074 1.01914 0.96822 1.22328 0.97974 0.98654 0.95862 1.23323 0.81465 0.99116 0.96862 0.89226 1.21506 0.98419 0.87313 0.92019 1.49125 1.14247 1.16690 1.52729 1.17411 0.84675 0.81965 0.80096 1.90816 1.18587 1.81441 1.50470 1.20246 1.02429 0.93219 0.99205 1.21560 0.93083 0.99636 0.92691 1.21085 1.01911 0.89878 1.01519 1.20770 0.98518 0.88195 0.94573 1.98395 1.90166 1.34413 1.79693 1.20878 1.01544 0.98423 0.96729 1.17360 0.91434 0.92291 0.84843 1.91595 1.71189 1.97027 1.49527 0.93423 0.88425 0.95609 0.93011 0.89332 0.92783 0.89697 0.96316 0.91465 0.82629 0.83474 0.83137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.02 11.00 55.49 0.61 -24.41 16 2 C 0.00 0.10 4.99 -17.43 -0.09 0.01 16 3 Si 0.90 20.52 29.58 -169.99 -5.03 15.49 16 4 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.25 -6.31 9.66 -15.06 -0.15 -6.46 16 8 H 0.07 1.68 7.86 -52.49 -0.41 1.27 16 9 N -0.59 -13.17 2.29 -171.08 -0.39 -13.56 16 10 C 0.17 3.94 4.60 -3.22 -0.01 3.93 16 11 C 0.11 2.03 4.11 -65.66 -0.27 1.76 16 12 H 0.09 1.75 7.96 -51.93 -0.41 1.33 16 13 C -0.11 -1.88 6.18 -25.25 -0.16 -2.04 16 14 C -0.11 -1.64 6.20 -25.12 -0.16 -1.79 16 15 C 0.10 1.49 3.02 -65.53 -0.20 1.29 16 16 H 0.09 1.12 5.77 -51.93 -0.30 0.82 16 17 C 0.13 2.44 5.63 -3.21 -0.02 2.42 16 18 N -0.60 -10.62 2.74 -154.06 -0.42 -11.04 16 19 C 0.57 10.59 7.39 -12.42 -0.09 10.50 16 20 O -0.54 -11.85 16.64 5.30 0.09 -11.77 16 21 C -0.15 -2.16 5.53 -104.91 -0.58 -2.74 16 22 C -0.05 -0.60 7.77 -39.20 -0.30 -0.91 16 23 C -0.13 -1.20 9.81 -39.61 -0.39 -1.59 16 24 C 0.01 0.06 6.32 -39.40 -0.25 -0.19 16 25 Cl -0.06 -0.47 28.95 -51.86 -1.50 -1.98 16 26 C -0.16 -1.66 9.79 -39.53 -0.39 -2.05 16 27 C 0.16 2.21 7.24 -38.97 -0.28 1.93 16 28 F -0.12 -1.80 16.27 2.25 0.04 -1.76 16 29 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 30 H 0.10 2.47 6.19 -51.93 -0.32 2.15 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.61 7.84 -51.92 -0.41 1.20 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.31 7.84 -51.93 -0.41 0.90 16 36 H 0.02 0.36 7.04 -51.93 -0.37 -0.01 16 37 H 0.07 1.12 7.96 -51.93 -0.41 0.71 16 38 H 0.16 1.83 4.97 -52.48 -0.26 1.57 16 39 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 40 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 339.30 15.07 5.11 5.11 Total: -1.00 -29.85 339.30 -9.37 -39.22 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -4.55 Total: 0.62 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -3.33 Total: 4.07 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.20 Total: -49.02 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.98 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.85 -9.37 -39.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017716486.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.747 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds