Wall clock time and date at job start Tue Mar 31 2020 20:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00163 * 2 1 4 4 H 1.48497 * 109.47116 * 274.69890 * 3 2 1 5 5 H 1.48501 * 109.47136 * 34.69700 * 3 2 1 6 6 H 1.48502 * 109.47024 * 154.69311 * 3 2 1 7 7 C 1.38810 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00055 * 194.88524 * 7 2 1 9 9 N 1.36938 * 119.99859 * 14.88912 * 7 2 1 10 10 C 1.47161 * 120.71338 * 25.34416 * 9 7 2 11 11 C 1.53887 * 108.03471 * 132.73564 * 10 9 7 12 12 H 1.08995 * 112.58536 * 182.22343 * 11 10 9 13 13 C 1.54544 * 107.83013 * 306.50966 * 11 10 9 14 14 C 1.54276 * 104.94799 * 89.00858 * 13 11 10 15 15 C 1.54797 * 104.72919 * 0.08588 * 14 13 11 16 16 H 1.08996 * 112.69019 * 146.64289 * 15 14 13 17 17 C 1.47172 * 120.70786 * 205.32971 * 9 7 2 18 18 N 1.48297 * 104.39962 * 24.61990 * 15 14 13 19 19 C 1.34785 * 128.07885 * 139.11841 * 18 15 14 20 20 O 1.21576 * 120.00407 * 175.42583 * 19 18 15 21 21 C 1.47633 * 119.99584 * 355.42994 * 19 18 15 22 22 C 1.39702 * 120.15595 * 40.84102 * 21 19 18 23 23 C 1.37792 * 119.89445 * 180.02562 * 22 21 19 24 24 C 1.38611 * 120.20309 * 0.02562 * 23 22 21 25 25 Cl 1.73603 * 119.84323 * 179.97438 * 24 23 22 26 26 C 1.38353 * 120.31204 * 0.02562 * 24 23 22 27 27 C 1.38250 * 120.10445 * 359.67992 * 26 24 23 28 28 F 1.35105 * 120.10381 * 180.29610 * 27 26 24 29 29 H 0.97009 * 119.99713 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.74827 * 13.10768 * 10 9 7 31 31 H 1.08994 * 109.75382 * 252.37372 * 10 9 7 32 32 H 1.08999 * 110.36713 * 207.90877 * 13 11 10 33 33 H 1.09007 * 110.36326 * 330.11011 * 13 11 10 34 34 H 1.08998 * 110.36734 * 118.90343 * 14 13 11 35 35 H 1.09003 * 110.36499 * 241.21457 * 14 13 11 36 36 H 1.09001 * 109.75332 * 107.63225 * 17 9 7 37 37 H 1.08997 * 109.78833 * 346.91649 * 17 9 7 38 38 H 1.08007 * 120.05277 * 359.97438 * 22 21 19 39 39 H 1.07998 * 119.89748 * 179.97438 * 23 22 21 40 40 H 1.08003 * 119.94928 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3984 2.1037 -1.3953 5 1 1.5009 2.6220 0.7970 6 1 3.5939 1.4135 0.5985 7 6 2.0102 -1.2021 0.0005 8 1 3.0630 -1.2178 0.2408 9 7 1.3600 -2.3683 -0.3037 10 6 0.1500 -2.3577 -1.1412 11 6 0.3027 -3.4516 -2.2128 12 1 -0.5410 -3.4830 -2.9021 13 6 1.6442 -3.2149 -2.9427 14 6 2.6867 -4.0063 -2.1260 15 6 1.8773 -4.6523 -0.9754 16 1 2.2681 -5.6265 -0.6818 17 6 1.8565 -3.6590 0.1998 18 7 0.4934 -4.7389 -1.5013 19 6 -0.3859 -5.7512 -1.3648 20 8 -1.5193 -5.6333 -1.7886 21 6 0.0273 -7.0032 -0.7005 22 6 0.8298 -6.9596 0.4422 23 6 1.2127 -8.1315 1.0576 24 6 0.8045 -9.3534 0.5461 25 17 1.2930 -10.8241 1.3285 26 6 0.0106 -9.4065 -0.5857 27 6 -0.3862 -8.2384 -1.2099 28 9 -1.1664 -8.2901 -2.3116 29 1 -0.4850 0.8401 -0.0004 30 1 0.0426 -1.3848 -1.6209 31 1 -0.7257 -2.5644 -0.5260 32 1 1.5932 -3.5955 -3.9629 33 1 1.8917 -2.1534 -2.9467 34 1 3.1483 -4.7760 -2.7445 35 1 3.4458 -3.3337 -1.7267 36 1 1.1941 -4.0285 0.9826 37 1 2.8641 -3.5372 0.5971 38 1 1.1503 -6.0089 0.8421 39 1 1.8335 -8.0978 1.9407 40 1 -0.3045 -10.3618 -0.9790 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017716486.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:39 Heat of formation + Delta-G solvation = -30.551291 kcal Electronic energy + Delta-G solvation = -27735.858580 eV Core-core repulsion = 23684.465667 eV Total energy + Delta-G solvation = -4051.392913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.14723 -41.90497 -40.19217 -39.08296 -37.53939 -35.97882 -33.43994 -33.04395 -32.02100 -31.81623 -31.43121 -28.16470 -25.73986 -25.29078 -24.24985 -24.15693 -22.42038 -21.60015 -20.11284 -19.19703 -18.81151 -17.92628 -17.85392 -17.21504 -16.92308 -16.68285 -16.36851 -16.27802 -15.72276 -15.33466 -15.28993 -15.01296 -14.61026 -14.44865 -14.33448 -14.21315 -13.71949 -13.67926 -13.43716 -13.22084 -12.89048 -12.76240 -12.68995 -12.44384 -12.23776 -12.13900 -12.07306 -12.01807 -11.75473 -11.59925 -11.17258 -11.11575 -10.58388 -10.21082 -10.02095 -9.80169 -8.68590 -7.83709 -5.29969 -0.57280 -0.10752 0.84403 1.47327 1.51433 1.52347 1.60595 1.78623 2.28000 2.52890 2.96531 3.20739 3.33191 3.44849 3.53160 3.80002 3.80935 3.89511 3.91712 4.09091 4.17256 4.26032 4.34491 4.49522 4.55176 4.66891 4.76068 4.82950 4.83936 4.89358 4.92546 5.02760 5.09092 5.12231 5.21657 5.37056 5.41910 5.57028 5.58060 5.69041 6.34862 6.53735 6.95322 7.11905 7.82125 8.35191 9.22517 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.019418 B = 0.003295 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.643703 B = 8496.654395 C = 9184.612390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.055 4.055 3 Si 0.967 3.033 4 H -0.289 1.289 5 H -0.305 1.305 6 H -0.261 1.261 7 C -0.247 4.247 8 H 0.085 0.915 9 N -0.597 5.597 10 C 0.189 3.811 11 C 0.107 3.893 12 H 0.075 0.925 13 C -0.106 4.106 14 C -0.104 4.104 15 C 0.107 3.893 16 H 0.131 0.869 17 C 0.129 3.871 18 N -0.597 5.597 19 C 0.565 3.435 20 O -0.585 6.585 21 C -0.167 4.167 22 C -0.049 4.049 23 C -0.106 4.106 24 C 0.013 3.987 25 Cl -0.035 7.035 26 C -0.143 4.143 27 C 0.142 3.858 28 F -0.134 7.134 29 H 0.247 0.753 30 H 0.066 0.934 31 H -0.024 1.024 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.013 0.987 37 H 0.091 0.909 38 H 0.157 0.843 39 H 0.180 0.820 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.742 -20.388 0.309 22.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.249 4.249 3 Si 0.796 3.204 4 H -0.216 1.216 5 H -0.233 1.233 6 H -0.186 1.186 7 C -0.376 4.376 8 H 0.102 0.898 9 N -0.321 5.321 10 C 0.062 3.938 11 C 0.003 3.997 12 H 0.094 0.906 13 C -0.144 4.144 14 C -0.142 4.142 15 C 0.004 3.996 16 H 0.148 0.852 17 C 0.003 3.997 18 N -0.328 5.328 19 C 0.355 3.645 20 O -0.467 6.467 21 C -0.171 4.171 22 C -0.068 4.068 23 C -0.125 4.125 24 C -0.014 4.014 25 Cl -0.006 7.006 26 C -0.162 4.162 27 C 0.121 3.879 28 F -0.113 7.113 29 H 0.056 0.944 30 H 0.084 0.916 31 H -0.006 1.006 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.031 0.969 37 H 0.109 0.891 38 H 0.175 0.825 39 H 0.198 0.802 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 8.035 -20.387 0.151 21.913 hybrid contribution -0.817 1.383 -0.172 1.615 sum 7.218 -19.004 -0.021 20.329 Atomic orbital electron populations 1.70207 1.06902 1.25584 1.56404 1.25780 0.95864 1.01543 1.01732 0.85249 0.78315 0.79743 0.77121 1.21583 1.23276 1.18568 1.19599 0.92607 0.84768 1.40660 0.89779 1.44232 1.29232 1.02358 1.56257 1.20899 0.87173 0.95784 0.89957 1.23043 0.99186 0.82953 0.94540 0.90638 1.22249 0.92810 1.01320 0.98055 1.22354 0.97109 0.99150 0.95572 1.23400 0.80175 1.00251 0.95794 0.85201 1.21756 0.99119 0.85738 0.93077 1.49198 1.15308 1.15870 1.52438 1.18108 0.83938 0.83117 0.79362 1.90776 1.20703 1.82572 1.52660 1.20018 1.04886 0.91476 1.00751 1.21536 0.92767 1.00690 0.91778 1.21377 1.00799 0.88701 1.01590 1.20889 0.97428 0.89145 0.93954 1.98416 1.89800 1.33210 1.79148 1.21051 1.00634 0.98110 0.96410 1.17606 0.92185 0.93016 0.85065 1.91545 1.71946 1.97129 1.50635 0.94434 0.91564 1.00565 0.90871 0.91242 0.89470 0.89647 0.96889 0.89127 0.82541 0.80229 0.81016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.06 11.00 21.65 0.24 -54.82 16 2 C -0.05 -2.89 4.99 84.86 0.42 -2.47 16 3 Si 0.97 42.85 29.58 68.60 2.03 44.88 16 4 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 5 H -0.31 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 7 C -0.25 -12.20 9.66 84.03 0.81 -11.38 16 8 H 0.08 3.88 7.86 -2.91 -0.02 3.86 16 9 N -0.60 -27.15 2.29 -695.17 -1.59 -28.74 16 10 C 0.19 9.18 4.60 86.55 0.40 9.58 16 11 C 0.11 4.26 4.11 45.47 0.19 4.45 16 12 H 0.08 3.17 7.96 -2.39 -0.02 3.15 16 13 C -0.11 -3.45 6.18 31.55 0.19 -3.25 16 14 C -0.10 -2.77 6.20 31.64 0.20 -2.58 16 15 C 0.11 3.02 3.02 45.56 0.14 3.16 16 16 H 0.13 2.70 5.77 -2.39 -0.01 2.68 16 17 C 0.13 4.45 5.63 86.55 0.49 4.94 16 18 N -0.60 -21.29 2.74 -759.59 -2.09 -23.37 16 19 C 0.56 21.35 7.39 86.72 0.64 21.99 16 20 O -0.59 -27.37 16.64 -3.96 -0.07 -27.43 16 21 C -0.17 -4.75 5.53 -20.05 -0.11 -4.86 16 22 C -0.05 -1.03 7.77 22.52 0.17 -0.85 16 23 C -0.11 -1.58 9.81 22.25 0.22 -1.36 16 24 C 0.01 0.20 6.32 22.39 0.14 0.35 16 25 Cl -0.04 -0.45 28.95 -2.72 -0.08 -0.53 16 26 C -0.14 -2.63 9.79 22.30 0.22 -2.41 16 27 C 0.14 3.73 7.24 22.67 0.16 3.89 16 28 F -0.13 -4.23 16.27 44.97 0.73 -3.49 16 29 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16 30 H 0.07 3.61 6.19 -2.39 -0.01 3.60 16 31 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 32 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.07 2.53 7.84 -2.38 -0.02 2.52 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.08 2.33 7.84 -2.39 -0.02 2.32 16 36 H 0.01 0.48 7.04 -2.39 -0.02 0.46 16 37 H 0.09 2.72 7.96 -2.39 -0.02 2.70 16 38 H 0.16 3.24 4.97 -2.91 -0.01 3.23 16 39 H 0.18 1.56 8.06 -2.91 -0.02 1.53 16 40 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -70.05 339.30 4.55 -65.50 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 1.09 Total: 8.82 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 4.28 Total: 19.19 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -3.44 Total: -106.93 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.07 Total: -27.43 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.73 Total: -3.49 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.08 Total: -0.53 kcal Total: -70.05 4.55 -65.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017716486.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.947 kcal (2) G-P(sol) polarization free energy of solvation -70.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds