Wall clock time and date at job start Tue Mar 31 2020 20:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99765 * 2 1 4 4 H 1.48494 * 109.46981 * 239.99735 * 3 2 1 5 5 H 1.48504 * 109.47078 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47137 * 119.99867 * 3 2 1 7 7 C 1.38813 * 120.00452 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00179 * 165.85991 * 7 2 1 9 9 N 1.36934 * 119.99594 * 345.85553 * 7 2 1 10 10 C 1.47622 * 120.90092 * 153.79947 * 9 7 2 11 11 C 1.53880 * 107.50388 * 132.49328 * 10 9 7 12 12 H 1.09001 * 112.10137 * 182.66271 * 11 10 9 13 13 C 1.54550 * 108.36949 * 307.00838 * 11 10 9 14 14 C 1.54275 * 104.84860 * 89.29692 * 13 11 10 15 15 C 1.54964 * 104.81072 * 359.81514 * 14 13 11 16 16 H 1.09000 * 112.26194 * 146.60842 * 15 14 13 17 17 C 1.47167 * 120.71354 * 334.49056 * 9 7 2 18 18 N 1.48311 * 107.21068 * 59.11611 * 11 10 9 19 19 C 1.34770 * 128.07981 * 106.09022 * 18 11 10 20 20 O 1.21570 * 120.00255 * 354.48902 * 19 18 11 21 21 C 1.47694 * 120.00105 * 174.75349 * 19 18 11 22 22 C 1.39653 * 120.15994 * 27.99628 * 21 19 18 23 23 C 1.37969 * 119.86833 * 180.02562 * 22 21 19 24 24 Cl 1.73596 * 119.90860 * 180.02562 * 23 22 21 25 25 C 1.38567 * 120.18899 * 359.97438 * 23 22 21 26 26 C 1.38201 * 120.32367 * 0.02562 * 25 23 22 27 27 C 1.38316 * 120.13452 * 359.72125 * 26 25 23 28 28 F 1.35097 * 120.09622 * 180.27455 * 27 26 25 29 29 H 0.97000 * 120.00137 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.38084 * 13.37738 * 10 9 7 31 31 H 1.09003 * 110.63687 * 252.31887 * 10 9 7 32 32 H 1.09000 * 110.36090 * 208.13954 * 13 11 10 33 33 H 1.09002 * 110.36276 * 330.34319 * 13 11 10 34 34 H 1.08997 * 110.36643 * 118.84495 * 14 13 11 35 35 H 1.09003 * 110.36471 * 241.05463 * 14 13 11 36 36 H 1.08996 * 109.75704 * 107.60779 * 17 9 7 37 37 H 1.09000 * 109.79104 * 346.89363 * 17 9 7 38 38 H 1.07999 * 120.06816 * 0.02562 * 22 21 19 39 39 H 1.08000 * 119.83875 * 180.02562 * 25 23 22 40 40 H 1.08001 * 119.92508 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0658 -1.2163 -0.2279 9 7 1.3569 -2.3699 0.2909 10 6 1.8460 -3.6619 -0.2293 11 6 1.8644 -4.6564 0.9448 12 1 2.2600 -5.6291 0.6523 13 6 2.6665 -4.0252 2.1053 14 6 1.6226 -3.2406 2.9267 15 6 0.2821 -3.4663 2.1826 16 1 -0.5676 -3.5020 2.8643 17 6 0.1395 -2.3644 1.1178 18 7 0.4780 -4.7486 1.4636 19 6 -0.4008 -5.7590 1.3118 20 8 -0.1228 -6.7048 0.6005 21 6 -1.7042 -5.7145 2.0051 22 6 -2.2919 -4.4865 2.3161 23 6 -3.5094 -4.4519 2.9643 24 17 -4.2412 -2.9260 3.3508 25 6 -4.1502 -5.6318 3.3068 26 6 -3.5757 -6.8515 3.0028 27 6 -2.3581 -6.9017 2.3485 28 9 -1.7999 -8.0944 2.0468 29 1 -0.4850 0.8400 -0.0004 30 1 2.8555 -3.5355 -0.6207 31 1 1.1890 -4.0329 -1.0160 32 1 3.1240 -4.8028 2.7170 33 1 3.4299 -3.3514 1.7163 34 1 1.5668 -3.6323 3.9424 35 1 1.8723 -2.1797 2.9432 36 1 -0.7309 -2.5660 0.4935 37 1 0.0277 -1.3951 1.6036 38 1 -1.7945 -3.5656 2.0498 39 1 -5.1032 -5.5982 3.8137 40 1 -4.0806 -7.7672 3.2731 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017718525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:09 Heat of formation + Delta-G solvation = -4.366078 kcal Electronic energy + Delta-G solvation = -28061.613523 eV Core-core repulsion = 24011.356086 eV Total energy + Delta-G solvation = -4050.257437 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.96419 -40.56705 -39.00150 -37.63795 -36.46572 -34.18337 -32.56455 -30.98068 -30.77570 -30.38285 -30.19485 -26.46767 -24.53170 -23.76387 -23.04414 -22.73571 -20.96924 -20.28488 -18.70436 -17.74403 -17.50398 -16.72792 -16.27236 -16.05376 -15.62791 -15.26026 -15.12096 -14.55877 -14.40430 -14.10545 -13.63240 -13.45356 -13.36700 -13.16268 -12.97285 -12.93308 -12.51160 -12.13594 -11.99228 -11.67109 -11.62562 -11.34355 -11.18536 -11.03211 -10.88660 -10.56906 -10.52818 -10.36095 -10.11024 -9.88392 -9.75864 -9.66175 -9.33547 -8.77352 -8.62742 -8.30915 -6.79506 -5.88391 -3.31475 0.51069 0.79181 1.93160 2.75777 3.14846 3.32357 3.38920 3.39182 3.48074 3.98178 4.33233 4.39527 4.48198 4.74372 4.89688 4.99707 5.16662 5.28394 5.30644 5.33555 5.48556 5.52266 5.66931 5.69630 5.75191 5.77550 5.86747 6.02180 6.05335 6.22313 6.30954 6.36457 6.39831 6.50669 6.67359 6.77784 6.89884 7.09167 7.37705 7.66815 7.94865 8.27755 8.39356 9.07703 9.69135 10.26688 11.19757 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012775 B = 0.004625 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.269267 B = 6053.163015 C = 7648.733013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.003 3.997 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.250 4.250 8 H 0.070 0.930 9 N -0.585 5.585 10 C 0.135 3.865 11 C 0.118 3.882 12 H 0.090 0.910 13 C -0.111 4.111 14 C -0.111 4.111 15 C 0.075 3.925 16 H 0.096 0.904 17 C 0.170 3.830 18 N -0.596 5.596 19 C 0.573 3.427 20 O -0.539 6.539 21 C -0.144 4.144 22 C -0.064 4.064 23 C -0.055 4.055 24 Cl -0.053 7.053 25 C -0.064 4.064 26 C -0.154 4.154 27 C 0.155 3.845 28 F -0.116 7.116 29 H 0.256 0.744 30 H 0.065 0.935 31 H 0.024 0.976 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.024 0.976 37 H 0.102 0.898 38 H 0.171 0.829 39 H 0.146 0.854 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.321 -9.183 10.019 14.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.195 4.195 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.380 4.380 8 H 0.087 0.913 9 N -0.309 5.309 10 C 0.008 3.992 11 C 0.014 3.986 12 H 0.108 0.892 13 C -0.149 4.149 14 C -0.150 4.150 15 C -0.029 4.029 16 H 0.113 0.887 17 C 0.043 3.957 18 N -0.328 5.328 19 C 0.361 3.639 20 O -0.418 6.418 21 C -0.149 4.149 22 C -0.083 4.083 23 C -0.082 4.082 24 Cl -0.024 7.024 25 C -0.083 4.083 26 C -0.173 4.173 27 C 0.135 3.865 28 F -0.094 7.094 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.042 0.958 37 H 0.119 0.881 38 H 0.188 0.812 39 H 0.164 0.836 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.359 -9.498 9.620 14.940 hybrid contribution 0.257 0.848 -0.112 0.894 sum -6.102 -8.650 9.508 14.229 Atomic orbital electron populations 1.69956 1.05178 1.25806 1.54243 1.25036 0.95381 0.98329 1.00761 0.86327 0.78819 0.83207 0.78144 1.20937 1.21633 1.20950 1.19150 0.91826 0.83917 1.43069 0.91270 1.44169 1.29237 1.01552 1.55894 1.21569 0.98563 0.86638 0.92407 1.22939 0.80331 0.99329 0.95986 0.89179 1.22298 0.97995 0.98679 0.95928 1.22378 0.93886 1.02037 0.96651 1.24051 0.98418 0.84367 0.96020 0.88682 1.21371 0.88711 0.95714 0.89898 1.49102 1.14437 1.16834 1.52447 1.17375 0.82929 0.81910 0.81662 1.90799 1.77556 1.34198 1.39278 1.20034 0.97627 0.92511 1.04699 1.21984 0.93201 0.98939 0.94151 1.20845 0.95521 0.87999 1.03858 1.98404 1.82232 1.28947 1.92768 1.21052 0.99861 0.89751 0.97629 1.21034 0.94790 0.99437 1.02017 1.17700 0.91989 0.80377 0.96481 1.91586 1.84674 1.42661 1.90444 0.93371 0.91644 0.95769 0.92800 0.89717 0.92932 0.89306 0.95828 0.88057 0.81193 0.83596 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.52 10.96 55.49 0.61 -23.92 16 2 C 0.00 0.09 5.01 -17.43 -0.09 0.00 16 3 Si 0.91 20.48 29.58 -169.99 -5.03 15.45 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.25 -6.28 9.67 -15.06 -0.15 -6.43 16 8 H 0.07 1.70 7.86 -52.49 -0.41 1.29 16 9 N -0.59 -13.41 2.27 -170.71 -0.39 -13.80 16 10 C 0.14 2.76 6.11 -2.97 -0.02 2.74 16 11 C 0.12 2.11 4.06 -65.66 -0.27 1.84 16 12 H 0.09 1.57 7.97 -51.93 -0.41 1.15 16 13 C -0.11 -1.76 6.18 -25.25 -0.16 -1.92 16 14 C -0.11 -1.79 6.21 -25.03 -0.16 -1.95 16 15 C 0.08 1.31 3.01 -65.43 -0.20 1.11 16 16 H 0.10 1.47 4.83 -51.93 -0.25 1.22 16 17 C 0.17 3.65 4.12 -3.21 -0.01 3.64 16 18 N -0.60 -10.89 2.74 -153.93 -0.42 -11.31 16 19 C 0.57 10.87 7.63 -12.40 -0.09 10.78 16 20 O -0.54 -11.75 16.17 5.30 0.09 -11.66 16 21 C -0.14 -2.29 5.77 -104.91 -0.61 -2.90 16 22 C -0.06 -0.92 7.78 -39.15 -0.30 -1.22 16 23 C -0.06 -0.67 6.31 -39.56 -0.25 -0.92 16 24 Cl -0.05 -0.62 28.95 -51.86 -1.50 -2.12 16 25 C -0.06 -0.62 9.82 -39.47 -0.39 -1.01 16 26 C -0.15 -1.59 10.01 -39.57 -0.40 -1.98 16 27 C 0.16 2.20 7.25 -38.96 -0.28 1.91 16 28 F -0.12 -1.83 15.93 2.25 0.04 -1.80 16 29 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.07 1.26 7.96 -51.93 -0.41 0.85 16 31 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.40 7.86 -51.93 -0.41 0.99 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.56 7.85 -51.93 -0.41 1.16 16 36 H 0.02 0.57 7.69 -51.93 -0.40 0.17 16 37 H 0.10 2.39 6.18 -51.93 -0.32 2.07 16 38 H 0.17 2.66 4.01 -52.49 -0.21 2.44 16 39 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 337.92 15.07 5.09 5.09 Total: -1.00 -29.43 337.92 -9.36 -38.79 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -4.49 Total: 1.55 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -3.36 Total: 3.70 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.20 Total: -49.02 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.43 -9.36 -38.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017718525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.425 kcal (2) G-P(sol) polarization free energy of solvation -29.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds