Wall clock time and date at job start Tue Mar 31 2020 20:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99765 * 2 1 4 4 H 1.48494 * 109.46981 * 239.99735 * 3 2 1 5 5 H 1.48504 * 109.47078 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47137 * 119.99867 * 3 2 1 7 7 C 1.38813 * 120.00452 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00179 * 165.85991 * 7 2 1 9 9 N 1.36934 * 119.99594 * 345.85553 * 7 2 1 10 10 C 1.47622 * 120.90092 * 153.79947 * 9 7 2 11 11 C 1.53880 * 107.50388 * 132.49328 * 10 9 7 12 12 H 1.09001 * 112.10137 * 182.66271 * 11 10 9 13 13 C 1.54550 * 108.36949 * 307.00838 * 11 10 9 14 14 C 1.54275 * 104.84860 * 89.29692 * 13 11 10 15 15 C 1.54964 * 104.81072 * 359.81514 * 14 13 11 16 16 H 1.09000 * 112.26194 * 146.60842 * 15 14 13 17 17 C 1.47167 * 120.71354 * 334.49056 * 9 7 2 18 18 N 1.48311 * 107.21068 * 59.11611 * 11 10 9 19 19 C 1.34770 * 128.07981 * 106.09022 * 18 11 10 20 20 O 1.21570 * 120.00255 * 354.48902 * 19 18 11 21 21 C 1.47694 * 120.00105 * 174.75349 * 19 18 11 22 22 C 1.39653 * 120.15994 * 27.99628 * 21 19 18 23 23 C 1.37969 * 119.86833 * 180.02562 * 22 21 19 24 24 Cl 1.73596 * 119.90860 * 180.02562 * 23 22 21 25 25 C 1.38567 * 120.18899 * 359.97438 * 23 22 21 26 26 C 1.38201 * 120.32367 * 0.02562 * 25 23 22 27 27 C 1.38316 * 120.13452 * 359.72125 * 26 25 23 28 28 F 1.35097 * 120.09622 * 180.27455 * 27 26 25 29 29 H 0.97000 * 120.00137 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.38084 * 13.37738 * 10 9 7 31 31 H 1.09003 * 110.63687 * 252.31887 * 10 9 7 32 32 H 1.09000 * 110.36090 * 208.13954 * 13 11 10 33 33 H 1.09002 * 110.36276 * 330.34319 * 13 11 10 34 34 H 1.08997 * 110.36643 * 118.84495 * 14 13 11 35 35 H 1.09003 * 110.36471 * 241.05463 * 14 13 11 36 36 H 1.08996 * 109.75704 * 107.60779 * 17 9 7 37 37 H 1.09000 * 109.79104 * 346.89363 * 17 9 7 38 38 H 1.07999 * 120.06816 * 0.02562 * 22 21 19 39 39 H 1.08000 * 119.83875 * 180.02562 * 25 23 22 40 40 H 1.08001 * 119.92508 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0658 -1.2163 -0.2279 9 7 1.3569 -2.3699 0.2909 10 6 1.8460 -3.6619 -0.2293 11 6 1.8644 -4.6564 0.9448 12 1 2.2600 -5.6291 0.6523 13 6 2.6665 -4.0252 2.1053 14 6 1.6226 -3.2406 2.9267 15 6 0.2821 -3.4663 2.1826 16 1 -0.5676 -3.5020 2.8643 17 6 0.1395 -2.3644 1.1178 18 7 0.4780 -4.7486 1.4636 19 6 -0.4008 -5.7590 1.3118 20 8 -0.1228 -6.7048 0.6005 21 6 -1.7042 -5.7145 2.0051 22 6 -2.2919 -4.4865 2.3161 23 6 -3.5094 -4.4519 2.9643 24 17 -4.2412 -2.9260 3.3508 25 6 -4.1502 -5.6318 3.3068 26 6 -3.5757 -6.8515 3.0028 27 6 -2.3581 -6.9017 2.3485 28 9 -1.7999 -8.0944 2.0468 29 1 -0.4850 0.8400 -0.0004 30 1 2.8555 -3.5355 -0.6207 31 1 1.1890 -4.0329 -1.0160 32 1 3.1240 -4.8028 2.7170 33 1 3.4299 -3.3514 1.7163 34 1 1.5668 -3.6323 3.9424 35 1 1.8723 -2.1797 2.9432 36 1 -0.7309 -2.5660 0.4935 37 1 0.0277 -1.3951 1.6036 38 1 -1.7945 -3.5656 2.0498 39 1 -5.1032 -5.5982 3.8137 40 1 -4.0806 -7.7672 3.2731 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017718525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:09 Heat of formation + Delta-G solvation = -19.663513 kcal Electronic energy + Delta-G solvation = -28062.276869 eV Core-core repulsion = 24011.356086 eV Total energy + Delta-G solvation = -4050.920784 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.08501 -41.97895 -40.15798 -39.08729 -37.44150 -35.97704 -33.88635 -32.68296 -32.26350 -31.57097 -31.39517 -28.21039 -25.88409 -25.32825 -24.29462 -24.07759 -22.43431 -21.65278 -20.17651 -19.25163 -18.60207 -17.92079 -17.77155 -17.40485 -16.85523 -16.69351 -16.51801 -16.19661 -15.75288 -15.30895 -15.25527 -14.92362 -14.61025 -14.50922 -14.34142 -14.17583 -13.71624 -13.59927 -13.54791 -13.23365 -12.94420 -12.68625 -12.63340 -12.35303 -12.26149 -12.14420 -12.10929 -12.02073 -11.75354 -11.54616 -11.19425 -11.08121 -10.58118 -10.38590 -9.95837 -9.72100 -8.69144 -7.84967 -5.31338 -0.53733 -0.19175 0.97050 1.50603 1.52589 1.54097 1.59218 1.77986 2.31508 2.52236 2.95688 3.14393 3.30980 3.41762 3.51940 3.77586 3.81987 3.87488 3.90452 4.10678 4.14704 4.30171 4.31907 4.48456 4.53581 4.56494 4.72262 4.76151 4.82306 4.82888 4.92552 5.02610 5.04014 5.11307 5.24369 5.32697 5.44724 5.53388 5.56951 5.66761 6.33722 6.48654 6.92767 7.12442 7.78488 8.33859 9.20764 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012775 B = 0.004625 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.269267 B = 6053.163015 C = 7648.733013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.045 4.045 3 Si 0.967 3.033 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.273 1.273 7 C -0.255 4.255 8 H 0.074 0.926 9 N -0.596 5.596 10 C 0.135 3.865 11 C 0.119 3.881 12 H 0.096 0.904 13 C -0.101 4.101 14 C -0.107 4.107 15 C 0.088 3.912 16 H 0.118 0.882 17 C 0.183 3.817 18 N -0.599 5.599 19 C 0.567 3.433 20 O -0.577 6.577 21 C -0.168 4.168 22 C -0.073 4.073 23 C -0.056 4.056 24 Cl -0.050 7.050 25 C -0.041 4.041 26 C -0.130 4.130 27 C 0.139 3.861 28 F -0.130 7.130 29 H 0.251 0.749 30 H 0.075 0.925 31 H -0.005 1.005 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.073 0.927 36 H -0.012 1.012 37 H 0.079 0.921 38 H 0.151 0.849 39 H 0.189 0.811 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.112 -10.040 12.429 17.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.240 4.240 3 Si 0.795 3.205 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.198 1.198 7 C -0.385 4.385 8 H 0.092 0.908 9 N -0.320 5.320 10 C 0.008 3.992 11 C 0.015 3.985 12 H 0.114 0.886 13 C -0.139 4.139 14 C -0.145 4.145 15 C -0.016 4.016 16 H 0.135 0.865 17 C 0.056 3.944 18 N -0.330 5.330 19 C 0.357 3.643 20 O -0.459 6.459 21 C -0.173 4.173 22 C -0.092 4.092 23 C -0.083 4.083 24 Cl -0.021 7.021 25 C -0.059 4.059 26 C -0.148 4.148 27 C 0.118 3.882 28 F -0.108 7.108 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.013 0.987 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.006 0.994 37 H 0.097 0.903 38 H 0.168 0.832 39 H 0.206 0.794 40 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -7.133 -10.359 12.046 17.415 hybrid contribution 0.407 1.085 -0.917 1.478 sum -6.725 -9.274 11.129 15.972 Atomic orbital electron populations 1.70129 1.06496 1.25938 1.55801 1.25713 0.96014 1.01117 1.01164 0.85355 0.77459 0.79372 0.78291 1.20835 1.22447 1.19846 1.19468 0.92190 0.84751 1.42060 0.90849 1.44375 1.29351 1.01855 1.56379 1.21618 0.98183 0.86367 0.93004 1.22883 0.81013 0.98818 0.95816 0.88609 1.22254 0.97428 0.99104 0.95161 1.22365 0.92694 1.01341 0.98113 1.23850 1.00402 0.82412 0.94895 0.86500 1.21090 0.86994 0.96186 0.90094 1.49177 1.14505 1.16935 1.52351 1.17955 0.83899 0.81308 0.81142 1.90758 1.78592 1.35609 1.40927 1.19837 0.96810 0.93988 1.06619 1.21713 0.94492 0.97563 0.95461 1.20958 0.94822 0.89096 1.03397 1.98413 1.81908 1.29104 1.92635 1.21528 1.00593 0.88215 0.95587 1.21452 0.92717 1.01266 0.99407 1.18046 0.93300 0.79241 0.97592 1.91548 1.85199 1.43296 1.90801 0.94009 0.90626 0.98707 0.90009 0.90237 0.89801 0.90839 0.99427 0.90280 0.83217 0.79378 0.79254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.45 10.96 21.65 0.24 -52.21 16 2 C -0.04 -2.35 5.01 84.86 0.43 -1.92 16 3 Si 0.97 42.60 29.58 68.60 2.03 44.63 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.30 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 7 C -0.25 -13.03 9.67 84.03 0.81 -12.22 16 8 H 0.07 3.63 7.86 -2.91 -0.02 3.60 16 9 N -0.60 -28.21 2.27 -694.00 -1.58 -29.79 16 10 C 0.13 5.70 6.11 86.46 0.53 6.23 16 11 C 0.12 4.26 4.06 45.47 0.18 4.45 16 12 H 0.10 3.35 7.97 -2.39 -0.02 3.33 16 13 C -0.10 -3.08 6.18 31.55 0.20 -2.89 16 14 C -0.11 -3.31 6.21 31.70 0.20 -3.12 16 15 C 0.09 3.08 3.01 45.61 0.14 3.22 16 16 H 0.12 3.61 4.83 -2.39 -0.01 3.60 16 17 C 0.18 8.23 4.12 86.55 0.36 8.59 16 18 N -0.60 -22.21 2.74 -759.19 -2.08 -24.28 16 19 C 0.57 22.01 7.63 86.74 0.66 22.67 16 20 O -0.58 -25.94 16.17 -3.93 -0.06 -26.00 16 21 C -0.17 -5.32 5.77 -20.05 -0.12 -5.43 16 22 C -0.07 -2.08 7.78 22.55 0.18 -1.90 16 23 C -0.06 -1.22 6.31 22.28 0.14 -1.08 16 24 Cl -0.05 -1.08 28.95 -2.72 -0.08 -1.16 16 25 C -0.04 -0.62 9.82 22.34 0.22 -0.40 16 26 C -0.13 -2.17 10.01 22.28 0.22 -1.94 16 27 C 0.14 3.71 7.25 22.67 0.16 3.88 16 28 F -0.13 -4.03 15.93 44.97 0.72 -3.32 16 29 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 30 H 0.08 2.98 7.96 -2.39 -0.02 2.96 16 31 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.08 2.52 7.86 -2.39 -0.02 2.51 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.07 2.54 7.85 -2.39 -0.02 2.52 16 36 H -0.01 -0.63 7.69 -2.39 -0.02 -0.65 16 37 H 0.08 3.91 6.18 -2.39 -0.01 3.90 16 38 H 0.15 4.83 4.01 -2.91 -0.01 4.82 16 39 H 0.19 1.37 8.06 -2.91 -0.02 1.34 16 40 H 0.19 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -67.21 337.92 4.58 -62.64 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 1.09 Total: 11.38 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: 4.30 Total: 18.11 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -3.42 Total: -106.28 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.06 Total: -26.00 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.72 Total: -3.32 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.16 kcal Total: -67.21 4.58 -62.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017718525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.972 kcal (2) G-P(sol) polarization free energy of solvation -67.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds