Wall clock time and date at job start Tue Mar 31 2020 20:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00201 * 2 1 4 4 H 1.48494 * 109.47227 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47167 * 300.00558 * 3 2 1 6 6 H 1.48495 * 109.46889 * 60.00047 * 3 2 1 7 7 C 1.38816 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00280 * 174.41011 * 7 2 1 9 9 N 1.36936 * 119.99485 * 354.40157 * 7 2 1 10 10 C 1.47163 * 120.70971 * 154.45373 * 9 7 2 11 11 C 1.53883 * 108.03206 * 132.75135 * 10 9 7 12 12 H 1.08998 * 112.10070 * 181.91023 * 11 10 9 13 13 C 1.54788 * 108.42543 * 306.23402 * 11 10 9 14 14 C 1.54284 * 104.73427 * 89.23850 * 13 11 10 15 15 C 1.54544 * 104.93847 * 0.07931 * 14 13 11 16 16 H 1.09010 * 112.17885 * 146.35421 * 15 14 13 17 17 C 1.47820 * 120.43152 * 333.37252 * 9 7 2 18 18 N 1.48308 * 107.20763 * 58.36779 * 11 10 9 19 19 C 1.34777 * 128.07992 * 106.07212 * 18 11 10 20 20 O 1.21576 * 119.99915 * 174.03242 * 19 18 11 21 21 C 1.47718 * 120.00097 * 354.03004 * 19 18 11 22 22 C 1.39669 * 120.11315 * 155.41422 * 21 19 18 23 23 C 1.37834 * 119.90199 * 180.02562 * 22 21 19 24 24 C 1.38635 * 120.13595 * 359.97438 * 23 22 21 25 25 F 1.35096 * 119.88984 * 180.02562 * 24 23 22 26 26 C 1.38745 * 120.22965 * 0.02562 * 24 23 22 27 27 Cl 1.73603 * 119.95421 * 180.02562 * 26 24 23 28 28 C 1.37968 * 120.09435 * 359.71710 * 26 24 23 29 29 H 0.96998 * 119.99591 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.75052 * 13.11896 * 10 9 7 31 31 H 1.09004 * 109.79410 * 252.41211 * 10 9 7 32 32 H 1.09004 * 110.39826 * 330.44759 * 13 11 10 33 33 H 1.09001 * 110.44879 * 208.05696 * 13 11 10 34 34 H 1.09000 * 110.36522 * 241.18254 * 14 13 11 35 35 H 1.09002 * 110.36036 * 118.97729 * 14 13 11 36 36 H 1.09002 * 108.78783 * 107.62102 * 17 9 7 37 37 H 1.08998 * 110.36192 * 347.11322 * 17 9 7 38 38 H 1.07996 * 120.04823 * 359.97438 * 22 21 19 39 39 H 1.07993 * 119.93069 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.06868 * 180.27459 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0864 -1.2043 -0.0916 9 7 1.3305 -2.3852 0.1146 10 6 1.8975 -3.6331 -0.4211 11 6 1.7624 -4.7202 0.6595 12 1 2.1944 -5.6694 0.3426 13 6 2.4050 -4.1942 1.9657 14 6 1.2597 -3.4688 2.7021 15 6 0.0309 -3.6233 1.7777 16 1 -0.8989 -3.7098 2.3402 17 6 0.0227 -2.4334 0.8020 18 7 0.3199 -4.8412 0.9822 19 6 -0.5301 -5.8274 0.6335 20 8 -1.6648 -5.8344 1.0698 21 6 -0.0829 -6.8997 -0.2787 22 6 -0.7095 -8.1476 -0.2537 23 6 -0.2884 -9.1453 -1.1065 24 6 0.7551 -8.9121 -1.9889 25 9 1.1635 -9.8933 -2.8229 26 6 1.3816 -7.6745 -2.0185 27 17 2.6871 -7.3901 -3.1268 28 6 0.9642 -6.6674 -1.1728 29 1 -0.4849 0.8401 0.0004 30 1 2.9496 -3.4848 -0.6649 31 1 1.3511 -3.9327 -1.3154 32 1 3.2114 -3.4969 1.7384 33 1 2.7778 -5.0232 2.5675 34 1 1.5029 -2.4148 2.8369 35 1 1.0705 -3.9400 3.6667 36 1 -0.7605 -2.5735 0.0569 37 1 -0.1516 -1.5081 1.3510 38 1 -1.5223 -8.3309 0.4335 39 1 -0.7723 -10.1105 -1.0872 40 1 1.4492 -5.7029 -1.1993 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017869441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:01 Heat of formation + Delta-G solvation = -7.761976 kcal Electronic energy + Delta-G solvation = -27748.600786 eV Core-core repulsion = 23698.196092 eV Total energy + Delta-G solvation = -4050.404694 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.25614 -40.66885 -39.01724 -37.61572 -36.63618 -34.21808 -32.27782 -31.37172 -30.98559 -30.42543 -30.00388 -26.47884 -24.33169 -23.75035 -23.41158 -22.68468 -20.99189 -20.28053 -18.67158 -17.93167 -17.78102 -16.74981 -16.37432 -16.05352 -15.67311 -15.36781 -14.95398 -14.66040 -14.56216 -14.09293 -13.70724 -13.63435 -13.49191 -13.15816 -12.87120 -12.82024 -12.69449 -12.20847 -11.99812 -11.78911 -11.61043 -11.46361 -11.20614 -11.11718 -10.94722 -10.63439 -10.52979 -10.36296 -10.04773 -9.96851 -9.76058 -9.67778 -9.28056 -8.96422 -8.62325 -8.33243 -6.79051 -5.85435 -3.33712 0.41974 0.75821 1.76328 2.66882 3.17691 3.31077 3.38661 3.40331 3.50744 3.73731 4.30214 4.37844 4.43474 4.76056 4.84136 4.96170 5.15889 5.20223 5.25930 5.32547 5.41335 5.48117 5.59268 5.68046 5.71545 5.74826 5.89524 6.01212 6.10355 6.24348 6.29338 6.31617 6.35940 6.49107 6.56105 6.62040 6.88178 7.27816 7.58751 7.67267 7.93654 8.29516 8.37991 9.08548 9.69299 10.24280 11.20474 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015625 B = 0.003829 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.554235 B = 7311.521874 C = 8310.901856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.003 3.997 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.070 0.930 9 N -0.588 5.588 10 C 0.134 3.866 11 C 0.093 3.907 12 H 0.091 0.909 13 C -0.110 4.110 14 C -0.113 4.113 15 C 0.104 3.896 16 H 0.091 0.909 17 C 0.168 3.832 18 N -0.597 5.597 19 C 0.573 3.427 20 O -0.545 6.545 21 C -0.118 4.118 22 C -0.033 4.033 23 C -0.151 4.151 24 C 0.125 3.875 25 F -0.125 7.125 26 C -0.081 4.081 27 Cl -0.043 7.043 28 C -0.064 4.064 29 H 0.255 0.745 30 H 0.067 0.933 31 H 0.022 0.978 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.023 0.977 37 H 0.111 0.889 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.490 -16.254 0.241 16.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.195 4.195 3 Si 0.737 3.263 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.379 4.379 8 H 0.088 0.912 9 N -0.312 5.312 10 C 0.007 3.993 11 C -0.012 4.012 12 H 0.108 0.892 13 C -0.148 4.148 14 C -0.152 4.152 15 C 0.001 3.999 16 H 0.109 0.891 17 C 0.042 3.958 18 N -0.329 5.329 19 C 0.362 3.638 20 O -0.425 6.425 21 C -0.121 4.121 22 C -0.052 4.052 23 C -0.170 4.170 24 C 0.105 3.895 25 F -0.103 7.103 26 C -0.109 4.109 27 Cl -0.014 7.014 28 C -0.083 4.083 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.041 0.959 37 H 0.129 0.871 38 H 0.168 0.832 39 H 0.168 0.832 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.862 -16.149 0.295 16.404 hybrid contribution 0.625 0.666 -0.483 1.033 sum 3.487 -15.483 -0.188 15.872 Atomic orbital electron populations 1.69920 1.05173 1.25425 1.54812 1.25083 0.95509 0.98241 1.00655 0.86138 0.79057 0.83734 0.77328 1.20310 1.21663 1.21597 1.19252 0.90397 0.83187 1.45057 0.91242 1.44163 1.20559 1.02762 1.63679 1.21525 0.98206 0.87189 0.92412 1.23396 0.80512 0.99190 0.98118 0.89173 1.22339 0.98577 0.99279 0.94655 1.22332 0.94294 1.02023 0.96526 1.23400 0.98035 0.84860 0.93613 0.89094 1.21657 0.86578 0.94810 0.92724 1.49152 1.10224 1.21348 1.52138 1.17517 0.84685 0.80621 0.80983 1.90772 1.18978 1.76613 1.56125 1.20061 0.97558 0.95596 0.98899 1.21212 0.97299 0.90365 0.96315 1.21072 0.97382 1.01661 0.96846 1.17639 0.95711 0.84587 0.91602 1.91546 1.89395 1.60223 1.69171 1.20882 0.96500 0.94617 0.98902 1.98403 1.46135 1.96177 1.60717 1.21952 0.94543 0.99719 0.92109 0.93448 0.91443 0.96028 0.89745 0.92638 0.89366 0.92964 0.95873 0.87127 0.83182 0.83166 0.81605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.87 10.53 55.49 0.58 -24.29 16 2 C 0.00 0.08 5.20 -17.43 -0.09 -0.01 16 3 Si 0.91 20.56 29.56 -169.99 -5.02 15.54 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.25 -6.20 9.69 -15.06 -0.15 -6.35 16 8 H 0.07 1.68 7.82 -52.49 -0.41 1.27 16 9 N -0.59 -13.25 2.38 -170.55 -0.41 -13.66 16 10 C 0.13 2.47 5.43 -3.22 -0.02 2.45 16 11 C 0.09 1.44 2.91 -65.53 -0.19 1.25 16 12 H 0.09 1.20 5.71 -51.93 -0.30 0.90 16 13 C -0.11 -1.65 6.22 -25.12 -0.16 -1.80 16 14 C -0.11 -1.86 6.20 -25.25 -0.16 -2.02 16 15 C 0.10 1.96 4.13 -65.66 -0.27 1.69 16 16 H 0.09 1.72 7.91 -51.92 -0.41 1.31 16 17 C 0.17 3.81 4.56 -2.86 -0.01 3.80 16 18 N -0.60 -10.42 2.73 -154.03 -0.42 -10.85 16 19 C 0.57 10.06 7.70 -12.39 -0.10 9.97 16 20 O -0.55 -11.07 16.90 5.30 0.09 -10.98 16 21 C -0.12 -1.67 5.73 -104.97 -0.60 -2.27 16 22 C -0.03 -0.38 9.59 -39.19 -0.38 -0.76 16 23 C -0.15 -1.49 10.01 -39.58 -0.40 -1.89 16 24 C 0.13 1.42 7.28 -39.25 -0.29 1.14 16 25 F -0.13 -1.43 16.83 2.25 0.04 -1.39 16 26 C -0.08 -1.00 6.32 -39.49 -0.25 -1.25 16 27 Cl -0.04 -0.52 28.60 -51.86 -1.48 -2.00 16 28 C -0.06 -0.86 7.71 -39.16 -0.30 -1.16 16 29 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.07 1.16 7.96 -51.93 -0.41 0.75 16 31 H 0.02 0.42 6.81 -51.93 -0.35 0.07 16 32 H 0.08 1.31 7.86 -51.93 -0.41 0.91 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 1.59 7.84 -51.93 -0.41 1.18 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.11 2.78 5.98 -51.93 -0.31 2.47 16 38 H 0.15 1.59 7.84 -52.49 -0.41 1.18 16 39 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 40 H 0.17 2.32 3.32 -52.49 -0.17 2.15 16 LS Contribution 337.36 15.07 5.08 5.08 Total: -1.00 -28.62 337.36 -9.31 -37.93 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -4.42 Total: 1.83 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -3.35 Total: 2.79 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.24 Total: -48.79 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.48 Total: -2.00 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.62 -9.31 -37.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017869441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.170 kcal (2) G-P(sol) polarization free energy of solvation -28.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds