Wall clock time and date at job start Tue Mar 31 2020 20:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00201 * 2 1 4 4 H 1.48494 * 109.47227 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47167 * 300.00558 * 3 2 1 6 6 H 1.48495 * 109.46889 * 60.00047 * 3 2 1 7 7 C 1.38816 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00280 * 174.41011 * 7 2 1 9 9 N 1.36936 * 119.99485 * 354.40157 * 7 2 1 10 10 C 1.47163 * 120.70971 * 154.45373 * 9 7 2 11 11 C 1.53883 * 108.03206 * 132.75135 * 10 9 7 12 12 H 1.08998 * 112.10070 * 181.91023 * 11 10 9 13 13 C 1.54788 * 108.42543 * 306.23402 * 11 10 9 14 14 C 1.54284 * 104.73427 * 89.23850 * 13 11 10 15 15 C 1.54544 * 104.93847 * 0.07931 * 14 13 11 16 16 H 1.09010 * 112.17885 * 146.35421 * 15 14 13 17 17 C 1.47820 * 120.43152 * 333.37252 * 9 7 2 18 18 N 1.48308 * 107.20763 * 58.36779 * 11 10 9 19 19 C 1.34777 * 128.07992 * 106.07212 * 18 11 10 20 20 O 1.21576 * 119.99915 * 174.03242 * 19 18 11 21 21 C 1.47718 * 120.00097 * 354.03004 * 19 18 11 22 22 C 1.39669 * 120.11315 * 155.41422 * 21 19 18 23 23 C 1.37834 * 119.90199 * 180.02562 * 22 21 19 24 24 C 1.38635 * 120.13595 * 359.97438 * 23 22 21 25 25 F 1.35096 * 119.88984 * 180.02562 * 24 23 22 26 26 C 1.38745 * 120.22965 * 0.02562 * 24 23 22 27 27 Cl 1.73603 * 119.95421 * 180.02562 * 26 24 23 28 28 C 1.37968 * 120.09435 * 359.71710 * 26 24 23 29 29 H 0.96998 * 119.99591 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.75052 * 13.11896 * 10 9 7 31 31 H 1.09004 * 109.79410 * 252.41211 * 10 9 7 32 32 H 1.09004 * 110.39826 * 330.44759 * 13 11 10 33 33 H 1.09001 * 110.44879 * 208.05696 * 13 11 10 34 34 H 1.09000 * 110.36522 * 241.18254 * 14 13 11 35 35 H 1.09002 * 110.36036 * 118.97729 * 14 13 11 36 36 H 1.09002 * 108.78783 * 107.62102 * 17 9 7 37 37 H 1.08998 * 110.36192 * 347.11322 * 17 9 7 38 38 H 1.07996 * 120.04823 * 359.97438 * 22 21 19 39 39 H 1.07993 * 119.93069 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.06868 * 180.27459 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0864 -1.2043 -0.0916 9 7 1.3305 -2.3852 0.1146 10 6 1.8975 -3.6331 -0.4211 11 6 1.7624 -4.7202 0.6595 12 1 2.1944 -5.6694 0.3426 13 6 2.4050 -4.1942 1.9657 14 6 1.2597 -3.4688 2.7021 15 6 0.0309 -3.6233 1.7777 16 1 -0.8989 -3.7098 2.3402 17 6 0.0227 -2.4334 0.8020 18 7 0.3199 -4.8412 0.9822 19 6 -0.5301 -5.8274 0.6335 20 8 -1.6648 -5.8344 1.0698 21 6 -0.0829 -6.8997 -0.2787 22 6 -0.7095 -8.1476 -0.2537 23 6 -0.2884 -9.1453 -1.1065 24 6 0.7551 -8.9121 -1.9889 25 9 1.1635 -9.8933 -2.8229 26 6 1.3816 -7.6745 -2.0185 27 17 2.6871 -7.3901 -3.1268 28 6 0.9642 -6.6674 -1.1728 29 1 -0.4849 0.8401 0.0004 30 1 2.9496 -3.4848 -0.6649 31 1 1.3511 -3.9327 -1.3154 32 1 3.2114 -3.4969 1.7384 33 1 2.7778 -5.0232 2.5675 34 1 1.5029 -2.4148 2.8369 35 1 1.0705 -3.9400 3.6667 36 1 -0.7605 -2.5735 0.0569 37 1 -0.1516 -1.5081 1.3510 38 1 -1.5223 -8.3309 0.4335 39 1 -0.7723 -10.1105 -1.0872 40 1 1.4492 -5.7029 -1.1993 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017869441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:00 Heat of formation + Delta-G solvation = -22.248200 kcal Electronic energy + Delta-G solvation = -27749.228956 eV Core-core repulsion = 23698.196092 eV Total energy + Delta-G solvation = -4051.032864 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.15649 -41.99904 -40.18396 -38.95641 -37.60390 -35.98430 -33.50267 -33.07004 -32.04894 -31.90964 -31.21527 -28.20322 -25.69666 -25.28224 -24.37492 -24.13603 -22.38598 -21.61192 -20.10878 -19.23799 -18.89210 -17.98554 -17.75558 -17.09055 -16.93072 -16.81344 -16.42709 -15.94629 -15.91477 -15.32851 -15.25966 -14.89184 -14.61908 -14.47604 -14.20644 -14.06760 -13.94589 -13.69640 -13.48668 -13.17084 -12.87265 -12.76479 -12.61812 -12.55944 -12.22660 -12.17756 -12.08346 -11.96713 -11.75596 -11.60936 -11.16999 -11.08846 -10.59242 -10.22194 -10.01386 -9.78694 -8.65936 -7.81276 -5.31769 -0.58191 -0.16291 0.82175 1.48462 1.51365 1.52616 1.60700 1.84886 2.38403 2.51688 2.81436 3.20420 3.35545 3.40632 3.52742 3.77390 3.83883 3.85367 3.96108 4.06538 4.20878 4.26099 4.33485 4.52039 4.57074 4.59307 4.63373 4.79385 4.83054 4.84003 4.98484 5.07365 5.08647 5.13693 5.21088 5.40464 5.42360 5.57562 5.63508 5.72770 6.37026 6.56772 6.99245 7.13483 7.81405 8.33983 9.22806 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015625 B = 0.003829 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.554235 B = 7311.521874 C = 8310.901856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.053 4.053 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.300 1.300 6 H -0.294 1.294 7 C -0.245 4.245 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.130 3.870 11 C 0.103 3.897 12 H 0.123 0.877 13 C -0.105 4.105 14 C -0.106 4.106 15 C 0.108 3.892 16 H 0.083 0.917 17 C 0.183 3.817 18 N -0.601 5.601 19 C 0.570 3.430 20 O -0.581 6.581 21 C -0.134 4.134 22 C -0.027 4.027 23 C -0.130 4.130 24 C 0.129 3.871 25 F -0.123 7.123 26 C -0.086 4.086 27 Cl -0.042 7.042 28 C -0.066 4.066 29 H 0.247 0.753 30 H 0.083 0.917 31 H 0.012 0.988 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.076 0.924 36 H -0.024 1.024 37 H 0.081 0.919 38 H 0.161 0.839 39 H 0.188 0.812 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.333 -19.015 0.402 19.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.247 4.247 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.228 1.228 6 H -0.221 1.221 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.324 5.324 10 C 0.004 3.996 11 C -0.001 4.001 12 H 0.141 0.859 13 C -0.143 4.143 14 C -0.144 4.144 15 C 0.004 3.996 16 H 0.101 0.899 17 C 0.057 3.943 18 N -0.331 5.331 19 C 0.360 3.640 20 O -0.463 6.463 21 C -0.137 4.137 22 C -0.045 4.045 23 C -0.148 4.148 24 C 0.108 3.892 25 F -0.101 7.101 26 C -0.114 4.114 27 Cl -0.013 7.013 28 C -0.085 4.085 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.095 0.905 36 H -0.006 1.006 37 H 0.099 0.901 38 H 0.178 0.822 39 H 0.205 0.795 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.757 -18.946 0.446 19.539 hybrid contribution 0.026 1.424 -0.624 1.555 sum 4.783 -17.522 -0.178 18.164 Atomic orbital electron populations 1.70130 1.06681 1.25371 1.56959 1.25790 0.96087 1.01260 1.01546 0.85173 0.78742 0.80041 0.76304 1.18564 1.22802 1.22101 1.19626 0.90995 0.83986 1.42923 0.90177 1.44322 1.20135 1.03749 1.64178 1.21712 0.98549 0.86311 0.93039 1.23387 0.79626 0.99528 0.97511 0.85924 1.22362 0.97574 1.00090 0.94238 1.22245 0.93563 1.01376 0.97248 1.23087 0.99234 0.84145 0.93165 0.89864 1.21237 0.85707 0.95386 0.91995 1.49201 1.11145 1.20812 1.51975 1.18092 0.84083 0.81059 0.80729 1.90743 1.20381 1.77633 1.57525 1.19832 0.99011 0.95610 0.99266 1.21366 0.97035 0.89579 0.96563 1.21374 0.96092 1.02508 0.94826 1.17777 0.95684 0.84154 0.91549 1.91561 1.89385 1.60012 1.69137 1.20890 0.96769 0.94868 0.98845 1.98406 1.46066 1.96235 1.60605 1.21730 0.94631 0.99586 0.92583 0.94349 0.89833 0.96998 0.90073 0.89278 0.91401 0.90520 1.00553 0.90124 0.82152 0.79478 0.82581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.29 10.53 21.65 0.23 -54.06 16 2 C -0.05 -2.79 5.20 84.86 0.44 -2.35 16 3 Si 0.97 43.05 29.56 68.60 2.03 45.07 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 6 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 7 C -0.25 -12.29 9.69 84.03 0.81 -11.48 16 8 H 0.08 3.79 7.82 -2.91 -0.02 3.77 16 9 N -0.60 -27.56 2.38 -693.50 -1.65 -29.21 16 10 C 0.13 4.71 5.43 86.55 0.47 5.18 16 11 C 0.10 3.03 2.91 45.55 0.13 3.16 16 12 H 0.12 2.88 5.71 -2.39 -0.01 2.87 16 13 C -0.10 -2.85 6.22 31.64 0.20 -2.65 16 14 C -0.11 -3.38 6.20 31.55 0.20 -3.19 16 15 C 0.11 4.14 4.13 45.46 0.19 4.33 16 16 H 0.08 3.30 7.91 -2.38 -0.02 3.28 16 17 C 0.18 8.77 4.56 86.42 0.39 9.16 16 18 N -0.60 -20.75 2.73 -759.48 -2.08 -22.82 16 19 C 0.57 19.80 7.70 86.75 0.67 20.46 16 20 O -0.58 -23.83 16.90 -3.96 -0.07 -23.90 16 21 C -0.13 -3.57 5.73 -20.09 -0.12 -3.69 16 22 C -0.03 -0.54 9.59 22.52 0.22 -0.33 16 23 C -0.13 -2.05 10.01 22.27 0.22 -1.83 16 24 C 0.13 2.51 7.28 22.49 0.16 2.67 16 25 F -0.12 -2.40 16.83 44.97 0.76 -1.64 16 26 C -0.09 -1.92 6.32 22.33 0.14 -1.78 16 27 Cl -0.04 -0.92 28.60 -2.72 -0.08 -1.00 16 28 C -0.07 -1.65 7.71 22.54 0.17 -1.48 16 29 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 30 H 0.08 2.75 7.96 -2.38 -0.02 2.73 16 31 H 0.01 0.47 6.81 -2.39 -0.02 0.46 16 32 H 0.08 2.31 7.86 -2.38 -0.02 2.29 16 33 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 2.45 7.84 -2.39 -0.02 2.44 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 37 H 0.08 4.34 5.98 -2.39 -0.01 4.33 16 38 H 0.16 2.97 7.84 -2.91 -0.02 2.95 16 39 H 0.19 1.61 8.06 -2.91 -0.02 1.58 16 40 H 0.16 4.16 3.32 -2.91 -0.01 4.15 16 Total: -1.00 -64.86 337.36 4.54 -60.32 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 1.09 Total: 11.03 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: 4.30 Total: 16.21 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -3.50 Total: -106.09 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.07 Total: -23.90 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.76 Total: -1.64 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.08 Total: -1.00 kcal Total: -64.86 4.54 -60.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017869441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.073 kcal (2) G-P(sol) polarization free energy of solvation -64.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds