Wall clock time and date at job start Tue Mar 31 2020 20:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99824 * 2 1 4 4 H 1.48505 * 109.47121 * 274.70938 * 3 2 1 5 5 H 1.48500 * 109.47435 * 34.70719 * 3 2 1 6 6 H 1.48499 * 109.47344 * 154.70648 * 3 2 1 7 7 C 1.38813 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99582 * 196.96274 * 7 2 1 9 9 N 1.36933 * 119.99906 * 16.97271 * 7 2 1 10 10 C 1.47619 * 120.90421 * 25.52526 * 9 7 2 11 11 C 1.53890 * 107.50107 * 132.49371 * 10 9 7 12 12 H 1.08997 * 112.09637 * 182.66140 * 11 10 9 13 13 C 1.54549 * 108.36923 * 307.00706 * 11 10 9 14 14 C 1.54280 * 104.84972 * 89.29854 * 13 11 10 15 15 C 1.54967 * 104.80808 * 359.81037 * 14 13 11 16 16 H 1.09001 * 112.25493 * 146.60626 * 15 14 13 17 17 C 1.47166 * 120.70506 * 206.21016 * 9 7 2 18 18 N 1.48312 * 104.15180 * 24.99617 * 15 14 13 19 19 C 1.34773 * 128.07982 * 139.03657 * 18 15 14 20 20 O 1.21554 * 120.00232 * 173.77489 * 19 18 15 21 21 C 1.47773 * 119.99899 * 354.05481 * 19 18 15 22 22 C 1.39618 * 120.14330 * 28.49321 * 21 19 18 23 23 C 1.38116 * 119.83876 * 180.02562 * 22 21 19 24 24 F 1.35096 * 119.93728 * 179.97438 * 23 22 21 25 25 C 1.38629 * 120.13178 * 359.97438 * 23 22 21 26 26 C 1.38247 * 120.28895 * 0.02562 * 25 23 22 27 27 C 1.38152 * 120.16044 * 359.75911 * 26 25 23 28 28 Cl 1.73595 * 120.06833 * 180.27969 * 27 26 25 29 29 H 0.96996 * 120.00238 * 0.02562 * 1 2 3 30 30 H 1.08992 * 109.38487 * 13.37951 * 10 9 7 31 31 H 1.08999 * 110.63560 * 252.31569 * 10 9 7 32 32 H 1.08996 * 110.36479 * 208.14176 * 13 11 10 33 33 H 1.08998 * 110.35996 * 330.34454 * 13 11 10 34 34 H 1.08994 * 110.36070 * 118.84704 * 14 13 11 35 35 H 1.09000 * 110.36060 * 241.05301 * 14 13 11 36 36 H 1.09006 * 109.74756 * 107.60794 * 17 9 7 37 37 H 1.09002 * 109.79423 * 346.90393 * 17 9 7 38 38 H 1.07999 * 120.07708 * 0.02628 * 22 21 19 39 39 H 1.07996 * 119.85721 * 180.02562 * 25 23 22 40 40 H 1.07995 * 119.91369 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3981 2.1039 -1.3954 5 1 1.5010 2.6219 0.7972 6 1 3.5940 1.4136 0.5982 7 6 2.0103 -1.2022 0.0005 8 1 3.0550 -1.2223 0.2734 9 7 1.3703 -2.3623 -0.3451 10 6 0.1857 -2.3414 -1.2257 11 6 0.3925 -3.4184 -2.3053 12 1 -0.4230 -3.4360 -3.0283 13 6 1.7631 -3.1772 -2.9775 14 6 2.7668 -3.9869 -2.1306 15 6 1.9090 -4.6411 -1.0180 16 1 2.2872 -5.6213 -0.7278 17 6 1.8396 -3.6603 0.1657 18 7 0.5494 -4.7167 -1.6056 19 6 -0.3386 -5.7268 -1.5191 20 8 -1.4611 -5.5892 -1.9647 21 6 0.0505 -6.9996 -0.8771 22 6 1.0239 -7.0112 0.1237 23 6 1.3832 -8.2045 0.7192 24 9 2.3252 -8.2180 1.6875 25 6 0.7791 -9.3884 0.3253 26 6 -0.1853 -9.3832 -0.6652 27 6 -0.5571 -8.1959 -1.2658 28 17 -1.7736 -8.1911 -2.5042 29 1 -0.4850 0.8400 -0.0004 30 1 0.1009 -1.3612 -1.6947 31 1 -0.7190 -2.5583 -0.6577 32 1 1.7515 -3.5429 -4.0043 33 1 2.0147 -2.1169 -2.9561 34 1 3.2487 -4.7506 -2.7409 35 1 3.5139 -3.3251 -1.6925 36 1 1.1419 -4.0354 0.9145 37 1 2.8291 -3.5468 0.6086 38 1 1.4948 -6.0892 0.4315 39 1 1.0631 -10.3189 0.7942 40 1 -0.6523 -10.3090 -0.9671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017990489.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:34 Heat of formation + Delta-G solvation = 0.611097 kcal Electronic energy + Delta-G solvation = -27930.677557 eV Core-core repulsion = 23880.635947 eV Total energy + Delta-G solvation = -4050.041610 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.14460 -40.62738 -39.05602 -37.47225 -36.43744 -34.18196 -32.45818 -31.30987 -30.52964 -30.43966 -30.21822 -26.46350 -24.57688 -23.76951 -23.09004 -22.75006 -20.99253 -20.27647 -18.81946 -17.82868 -17.08137 -16.85615 -16.50244 -16.06213 -15.80351 -15.28776 -15.13049 -14.63529 -14.46866 -14.08967 -13.78700 -13.54393 -13.24707 -13.13129 -12.95623 -12.83851 -12.50402 -12.23398 -12.04389 -11.73493 -11.50998 -11.33452 -11.16059 -11.02607 -10.89598 -10.57798 -10.49637 -10.35219 -10.03267 -9.89797 -9.75084 -9.53214 -9.34505 -8.80926 -8.60552 -8.27394 -6.79069 -5.86463 -3.29400 0.45326 0.71802 2.00080 2.73348 3.16335 3.32668 3.40192 3.41815 3.44609 3.89603 4.27207 4.40444 4.45547 4.65858 4.84237 4.96851 5.09972 5.25980 5.30635 5.30985 5.41617 5.49070 5.59637 5.66813 5.68610 5.72253 5.79438 6.01222 6.11041 6.26599 6.33554 6.34420 6.37699 6.52678 6.56824 6.65712 6.90059 7.21835 7.50110 7.69731 7.96705 8.28928 8.42808 9.08077 9.71035 10.28132 11.21668 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.003870 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.269280 B = 7232.852382 C = 8129.202251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.005 3.995 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.255 4.255 8 H 0.070 0.930 9 N -0.584 5.584 10 C 0.172 3.828 11 C 0.108 3.892 12 H 0.089 0.911 13 C -0.112 4.112 14 C -0.110 4.110 15 C 0.087 3.913 16 H 0.097 0.903 17 C 0.134 3.866 18 N -0.596 5.596 19 C 0.567 3.433 20 O -0.523 6.523 21 C -0.081 4.081 22 C -0.128 4.128 23 C 0.098 3.902 24 F -0.131 7.131 25 C -0.127 4.127 26 C -0.092 4.092 27 C -0.005 4.005 28 Cl -0.032 7.032 29 H 0.255 0.745 30 H 0.093 0.907 31 H 0.028 0.972 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.019 0.981 37 H 0.067 0.933 38 H 0.168 0.832 39 H 0.147 0.853 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.638 -18.094 -2.897 18.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.194 4.194 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.088 0.912 9 N -0.307 5.307 10 C 0.046 3.954 11 C 0.005 3.995 12 H 0.107 0.893 13 C -0.150 4.150 14 C -0.148 4.148 15 C -0.018 4.018 16 H 0.115 0.885 17 C 0.006 3.994 18 N -0.329 5.329 19 C 0.354 3.646 20 O -0.400 6.400 21 C -0.085 4.085 22 C -0.147 4.147 23 C 0.079 3.921 24 F -0.109 7.109 25 C -0.146 4.146 26 C -0.110 4.110 27 C -0.033 4.033 28 Cl -0.002 7.002 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.037 0.963 37 H 0.085 0.915 38 H 0.185 0.815 39 H 0.165 0.835 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.776 -17.903 -3.196 18.397 hybrid contribution 0.458 0.820 0.296 0.984 sum 3.233 -17.083 -2.901 17.627 Atomic orbital electron populations 1.70033 1.05253 1.25720 1.53540 1.25036 0.95266 0.98422 1.00692 0.86265 0.79092 0.83709 0.77629 1.21402 1.21816 1.20391 1.19171 0.92613 0.84344 1.42309 0.91213 1.44198 1.32585 1.00791 1.53155 1.21383 0.88770 0.96091 0.89150 1.23283 0.97616 0.82721 0.95871 0.89298 1.22310 0.94043 1.01824 0.96834 1.22365 0.97823 0.98566 0.96077 1.23647 0.82213 0.99371 0.96557 0.88540 1.21477 0.98595 0.87433 0.91871 1.49115 1.15741 1.16228 1.51799 1.17431 0.84620 0.82095 0.80418 1.90829 1.18847 1.81479 1.48866 1.19743 0.97000 0.93816 0.97970 1.22033 0.97190 0.99196 0.96308 1.17575 0.90619 0.94324 0.89609 1.91546 1.61950 1.97281 1.60160 1.21239 0.97201 0.97803 0.98331 1.20867 0.97282 0.97148 0.95733 1.20991 0.94140 0.93526 0.94618 1.98418 1.52389 1.98734 1.50694 0.93443 0.88848 0.95367 0.92992 0.89355 0.92772 0.89781 0.96289 0.91457 0.81520 0.83491 0.83411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.28 11.16 55.49 0.62 -24.66 16 2 C 0.00 0.13 4.94 -17.43 -0.09 0.04 16 3 Si 0.90 20.74 29.59 -169.99 -5.03 15.71 16 4 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.26 -6.44 9.64 -15.06 -0.15 -6.59 16 8 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 9 N -0.58 -13.40 2.27 -170.71 -0.39 -13.79 16 10 C 0.17 3.97 4.70 -2.97 -0.01 3.96 16 11 C 0.11 2.07 4.06 -65.65 -0.27 1.80 16 12 H 0.09 1.71 7.98 -51.93 -0.41 1.29 16 13 C -0.11 -1.86 6.18 -25.25 -0.16 -2.02 16 14 C -0.11 -1.67 6.21 -25.02 -0.16 -1.82 16 15 C 0.09 1.37 3.01 -65.44 -0.20 1.18 16 16 H 0.10 1.29 4.83 -51.93 -0.25 1.04 16 17 C 0.13 2.53 5.54 -3.22 -0.02 2.51 16 18 N -0.60 -10.66 2.74 -153.90 -0.42 -11.08 16 19 C 0.57 10.30 7.52 -12.36 -0.09 10.21 16 20 O -0.52 -10.90 15.05 5.32 0.08 -10.82 16 21 C -0.08 -1.20 5.77 -104.94 -0.61 -1.81 16 22 C -0.13 -1.67 7.97 -39.11 -0.31 -1.99 16 23 C 0.10 1.10 7.29 -39.48 -0.29 0.81 16 24 F -0.13 -1.50 17.26 2.25 0.04 -1.46 16 25 C -0.13 -1.14 10.02 -39.43 -0.39 -1.54 16 26 C -0.09 -0.88 9.82 -39.61 -0.39 -1.27 16 27 C 0.00 -0.06 6.34 -39.07 -0.25 -0.31 16 28 Cl -0.03 -0.44 26.45 -51.86 -1.37 -1.81 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.09 2.37 6.29 -51.93 -0.33 2.04 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.61 7.86 -51.93 -0.41 1.20 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.33 7.85 -51.93 -0.41 0.92 16 36 H 0.02 0.39 7.70 -51.93 -0.40 -0.01 16 37 H 0.07 1.19 7.96 -51.93 -0.41 0.78 16 38 H 0.17 2.23 4.06 -52.49 -0.21 2.02 16 39 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 336.10 15.07 5.06 5.06 Total: -1.00 -29.68 336.10 -9.27 -38.95 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.50 Total: 0.71 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -3.37 Total: 3.18 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: -0.19 Total: -49.53 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.82 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.37 Total: -1.81 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.68 -9.27 -38.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017990489.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.564 kcal (2) G-P(sol) polarization free energy of solvation -29.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds