Wall clock time and date at job start Tue Mar 31 2020 20:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99824 * 2 1 4 4 H 1.48505 * 109.47121 * 274.70938 * 3 2 1 5 5 H 1.48500 * 109.47435 * 34.70719 * 3 2 1 6 6 H 1.48499 * 109.47344 * 154.70648 * 3 2 1 7 7 C 1.38813 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99582 * 196.96274 * 7 2 1 9 9 N 1.36933 * 119.99906 * 16.97271 * 7 2 1 10 10 C 1.47619 * 120.90421 * 25.52526 * 9 7 2 11 11 C 1.53890 * 107.50107 * 132.49371 * 10 9 7 12 12 H 1.08997 * 112.09637 * 182.66140 * 11 10 9 13 13 C 1.54549 * 108.36923 * 307.00706 * 11 10 9 14 14 C 1.54280 * 104.84972 * 89.29854 * 13 11 10 15 15 C 1.54967 * 104.80808 * 359.81037 * 14 13 11 16 16 H 1.09001 * 112.25493 * 146.60626 * 15 14 13 17 17 C 1.47166 * 120.70506 * 206.21016 * 9 7 2 18 18 N 1.48312 * 104.15180 * 24.99617 * 15 14 13 19 19 C 1.34773 * 128.07982 * 139.03657 * 18 15 14 20 20 O 1.21554 * 120.00232 * 173.77489 * 19 18 15 21 21 C 1.47773 * 119.99899 * 354.05481 * 19 18 15 22 22 C 1.39618 * 120.14330 * 28.49321 * 21 19 18 23 23 C 1.38116 * 119.83876 * 180.02562 * 22 21 19 24 24 F 1.35096 * 119.93728 * 179.97438 * 23 22 21 25 25 C 1.38629 * 120.13178 * 359.97438 * 23 22 21 26 26 C 1.38247 * 120.28895 * 0.02562 * 25 23 22 27 27 C 1.38152 * 120.16044 * 359.75911 * 26 25 23 28 28 Cl 1.73595 * 120.06833 * 180.27969 * 27 26 25 29 29 H 0.96996 * 120.00238 * 0.02562 * 1 2 3 30 30 H 1.08992 * 109.38487 * 13.37951 * 10 9 7 31 31 H 1.08999 * 110.63560 * 252.31569 * 10 9 7 32 32 H 1.08996 * 110.36479 * 208.14176 * 13 11 10 33 33 H 1.08998 * 110.35996 * 330.34454 * 13 11 10 34 34 H 1.08994 * 110.36070 * 118.84704 * 14 13 11 35 35 H 1.09000 * 110.36060 * 241.05301 * 14 13 11 36 36 H 1.09006 * 109.74756 * 107.60794 * 17 9 7 37 37 H 1.09002 * 109.79423 * 346.90393 * 17 9 7 38 38 H 1.07999 * 120.07708 * 0.02628 * 22 21 19 39 39 H 1.07996 * 119.85721 * 180.02562 * 25 23 22 40 40 H 1.07995 * 119.91369 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3981 2.1039 -1.3954 5 1 1.5010 2.6219 0.7972 6 1 3.5940 1.4136 0.5982 7 6 2.0103 -1.2022 0.0005 8 1 3.0550 -1.2223 0.2734 9 7 1.3703 -2.3623 -0.3451 10 6 0.1857 -2.3414 -1.2257 11 6 0.3925 -3.4184 -2.3053 12 1 -0.4230 -3.4360 -3.0283 13 6 1.7631 -3.1772 -2.9775 14 6 2.7668 -3.9869 -2.1306 15 6 1.9090 -4.6411 -1.0180 16 1 2.2872 -5.6213 -0.7278 17 6 1.8396 -3.6603 0.1657 18 7 0.5494 -4.7167 -1.6056 19 6 -0.3386 -5.7268 -1.5191 20 8 -1.4611 -5.5892 -1.9647 21 6 0.0505 -6.9996 -0.8771 22 6 1.0239 -7.0112 0.1237 23 6 1.3832 -8.2045 0.7192 24 9 2.3252 -8.2180 1.6875 25 6 0.7791 -9.3884 0.3253 26 6 -0.1853 -9.3832 -0.6652 27 6 -0.5571 -8.1959 -1.2658 28 17 -1.7736 -8.1911 -2.5042 29 1 -0.4850 0.8400 -0.0004 30 1 0.1009 -1.3612 -1.6947 31 1 -0.7190 -2.5583 -0.6577 32 1 1.7515 -3.5429 -4.0043 33 1 2.0147 -2.1169 -2.9561 34 1 3.2487 -4.7506 -2.7409 35 1 3.5139 -3.3251 -1.6925 36 1 1.1419 -4.0354 0.9145 37 1 2.8291 -3.5468 0.6086 38 1 1.4948 -6.0892 0.4315 39 1 1.0631 -10.3189 0.7942 40 1 -0.6523 -10.3090 -0.9671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017990489.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:33 Heat of formation + Delta-G solvation = -15.272094 kcal Electronic energy + Delta-G solvation = -27931.366304 eV Core-core repulsion = 23880.635947 eV Total energy + Delta-G solvation = -4050.730357 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.01738 -41.97664 -40.21151 -38.84186 -37.44074 -35.97540 -33.65136 -33.06314 -32.03052 -31.56491 -31.35947 -28.21054 -25.87360 -25.33874 -24.28007 -24.03623 -22.39777 -21.61222 -20.25254 -19.26791 -18.16312 -17.99877 -17.76033 -17.34212 -16.81357 -16.70112 -16.51384 -16.26592 -15.80633 -15.32398 -15.19931 -14.87256 -14.73174 -14.37346 -14.31156 -14.01692 -13.73767 -13.55086 -13.54455 -13.21340 -12.91868 -12.76502 -12.60507 -12.35111 -12.25995 -12.13678 -12.06657 -12.00032 -11.73181 -11.53623 -11.19029 -10.84138 -10.60093 -10.35223 -9.89029 -9.69113 -8.70728 -7.86371 -5.32128 -0.51102 -0.16974 1.02887 1.48893 1.50767 1.59329 1.60089 1.82670 2.34931 2.51316 2.95204 3.26349 3.30763 3.42030 3.53568 3.77465 3.82537 3.88064 3.95446 4.08558 4.16018 4.27276 4.32060 4.54469 4.55619 4.59520 4.74931 4.79441 4.82314 4.85025 4.94002 5.00947 5.06182 5.10325 5.20836 5.36184 5.51164 5.54175 5.57297 5.67065 6.32233 6.57027 7.01955 7.08851 7.78619 8.33466 9.20182 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.003870 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.269280 B = 7232.852382 C = 8129.202251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.051 4.051 3 Si 0.967 3.033 4 H -0.287 1.287 5 H -0.304 1.304 6 H -0.263 1.263 7 C -0.251 4.251 8 H 0.082 0.918 9 N -0.595 5.595 10 C 0.187 3.813 11 C 0.112 3.888 12 H 0.080 0.920 13 C -0.104 4.104 14 C -0.104 4.104 15 C 0.098 3.902 16 H 0.132 0.868 17 C 0.129 3.871 18 N -0.600 5.600 19 C 0.561 3.439 20 O -0.561 6.561 21 C -0.105 4.105 22 C -0.134 4.134 23 C 0.098 3.902 24 F -0.131 7.131 25 C -0.100 4.100 26 C -0.076 4.076 27 C -0.015 4.015 28 Cl -0.048 7.048 29 H 0.248 0.752 30 H 0.063 0.937 31 H -0.021 1.021 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.004 0.996 37 H 0.085 0.915 38 H 0.159 0.841 39 H 0.189 0.811 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.307 -21.418 -2.716 22.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.246 4.246 3 Si 0.795 3.205 4 H -0.213 1.213 5 H -0.231 1.231 6 H -0.187 1.187 7 C -0.381 4.381 8 H 0.100 0.900 9 N -0.319 5.319 10 C 0.060 3.940 11 C 0.008 3.992 12 H 0.098 0.902 13 C -0.142 4.142 14 C -0.142 4.142 15 C -0.006 4.006 16 H 0.149 0.851 17 C 0.003 3.997 18 N -0.332 5.332 19 C 0.351 3.649 20 O -0.441 6.441 21 C -0.109 4.109 22 C -0.153 4.153 23 C 0.079 3.921 24 F -0.109 7.109 25 C -0.119 4.119 26 C -0.094 4.094 27 C -0.043 4.043 28 Cl -0.018 7.018 29 H 0.057 0.943 30 H 0.081 0.919 31 H -0.003 1.003 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.022 0.978 37 H 0.104 0.896 38 H 0.176 0.824 39 H 0.206 0.794 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 5.499 -21.264 -3.005 22.168 hybrid contribution -0.397 1.727 0.341 1.804 sum 5.102 -19.537 -2.664 20.367 Atomic orbital electron populations 1.70219 1.06949 1.25736 1.56007 1.25780 0.95813 1.01565 1.01488 0.85254 0.78295 0.79663 0.77251 1.21343 1.23135 1.18703 1.19576 0.93112 0.85104 1.40267 0.90040 1.44373 1.32065 1.01918 1.53502 1.20989 0.87320 0.96050 0.89612 1.22984 0.99210 0.82492 0.94519 0.90175 1.22228 0.92554 1.01154 0.98303 1.22384 0.97048 0.99036 0.95705 1.23638 0.81453 1.00169 0.95309 0.85111 1.21670 0.98751 0.86205 0.93065 1.49177 1.16626 1.15615 1.51804 1.18072 0.83973 0.83146 0.79739 1.90796 1.20335 1.82406 1.50517 1.19450 0.99212 0.92557 0.99635 1.21864 0.97185 0.99888 0.96374 1.17638 0.90667 0.94399 0.89404 1.91556 1.61966 1.97269 1.60122 1.21682 0.95074 0.98437 0.96721 1.21261 0.96587 0.96995 0.94592 1.21236 0.93999 0.94235 0.94848 1.98414 1.53137 1.98767 1.51525 0.94335 0.91862 1.00290 0.90524 0.91304 0.89345 0.90001 0.97829 0.89642 0.82403 0.79351 0.79917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.77 11.16 21.65 0.24 -55.53 16 2 C -0.05 -2.78 4.94 84.86 0.42 -2.36 16 3 Si 0.97 43.54 29.59 68.60 2.03 45.57 16 4 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.25 -12.81 9.64 84.03 0.81 -12.00 16 8 H 0.08 3.92 7.88 -2.91 -0.02 3.90 16 9 N -0.60 -28.05 2.27 -694.02 -1.58 -29.62 16 10 C 0.19 9.21 4.70 86.47 0.41 9.62 16 11 C 0.11 4.44 4.06 45.47 0.18 4.63 16 12 H 0.08 3.27 7.98 -2.39 -0.02 3.26 16 13 C -0.10 -3.40 6.18 31.56 0.20 -3.20 16 14 C -0.10 -2.89 6.21 31.70 0.20 -2.69 16 15 C 0.10 2.95 3.01 45.61 0.14 3.09 16 16 H 0.13 3.14 4.83 -2.39 -0.01 3.13 16 17 C 0.13 4.87 5.54 86.55 0.48 5.35 16 18 N -0.60 -21.62 2.74 -759.09 -2.08 -23.70 16 19 C 0.56 20.68 7.52 86.77 0.65 21.33 16 20 O -0.56 -24.31 15.05 -3.89 -0.06 -24.36 16 21 C -0.10 -2.98 5.77 -20.07 -0.12 -3.10 16 22 C -0.13 -3.22 7.97 22.57 0.18 -3.04 16 23 C 0.10 1.84 7.29 22.33 0.16 2.01 16 24 F -0.13 -2.52 17.26 44.97 0.78 -1.75 16 25 C -0.10 -1.29 10.02 22.37 0.22 -1.07 16 26 C -0.08 -1.13 9.82 22.25 0.22 -0.91 16 27 C -0.02 -0.36 6.34 22.60 0.14 -0.22 16 28 Cl -0.05 -1.29 26.45 -2.72 -0.07 -1.36 16 29 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.06 3.47 6.29 -2.39 -0.02 3.45 16 31 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.07 2.53 7.86 -2.39 -0.02 2.51 16 34 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.08 2.36 7.85 -2.39 -0.02 2.34 16 36 H 0.00 0.16 7.70 -2.38 -0.02 0.14 16 37 H 0.09 2.89 7.96 -2.39 -0.02 2.87 16 38 H 0.16 3.98 4.06 -2.91 -0.01 3.97 16 39 H 0.19 0.96 8.06 -2.91 -0.02 0.94 16 40 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -69.49 336.10 4.65 -64.84 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 1.09 Total: 8.48 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 4.29 Total: 17.43 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -3.41 Total: -108.85 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.06 Total: -24.36 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.78 Total: -1.75 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.07 Total: -1.36 kcal Total: -69.49 4.65 -64.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017990489.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.569 kcal (2) G-P(sol) polarization free energy of solvation -69.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds