Wall clock time and date at job start Tue Mar 31 2020 20:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86791 * 120.00302 * 2 1 4 4 H 1.48506 * 109.46983 * 87.23052 * 3 2 1 5 5 H 1.48505 * 109.47485 * 207.22895 * 3 2 1 6 6 H 1.48497 * 109.47353 * 327.23347 * 3 2 1 7 7 C 1.38813 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00111 * 164.54373 * 7 2 1 9 9 N 1.36934 * 120.00155 * 344.54396 * 7 2 1 10 10 C 1.47164 * 120.71375 * 156.89852 * 9 7 2 11 11 C 1.53880 * 108.03332 * 132.75485 * 10 9 7 12 12 H 1.08996 * 112.10302 * 181.91308 * 11 10 9 13 13 C 1.54553 * 107.83056 * 306.51187 * 11 10 9 14 14 C 1.54279 * 104.85145 * 89.07011 * 13 11 10 15 15 C 1.54544 * 104.84981 * 359.97438 * 14 13 11 16 16 H 1.08993 * 112.18413 * 146.41029 * 15 14 13 17 17 C 1.47160 * 120.70914 * 336.61921 * 9 7 2 18 18 N 1.48311 * 107.20696 * 58.36472 * 11 10 9 19 19 C 1.34772 * 128.07678 * 106.70112 * 18 11 10 20 20 O 1.21560 * 120.00076 * 353.38587 * 19 18 11 21 21 C 1.47781 * 119.99734 * 173.37929 * 19 18 11 22 22 C 1.39632 * 120.14407 * 29.84482 * 21 19 18 23 23 C 1.37893 * 119.91317 * 179.71897 * 22 21 19 24 24 C 1.38401 * 120.21179 * 0.52734 * 23 22 21 25 25 C 1.38464 * 120.28857 * 359.76539 * 24 23 22 26 26 F 1.35098 * 119.96027 * 179.97438 * 25 24 23 27 27 C 1.38392 * 120.08110 * 359.95882 * 25 24 23 28 28 Cl 1.73592 * 120.10476 * 180.02562 * 27 25 24 29 29 H 0.96997 * 119.99628 * 0.02562 * 1 2 3 30 30 H 1.08992 * 109.75077 * 252.39565 * 10 9 7 31 31 H 1.09009 * 109.74582 * 13.07612 * 10 9 7 32 32 H 1.09004 * 110.35922 * 207.91483 * 13 11 10 33 33 H 1.08998 * 110.36256 * 330.22422 * 13 11 10 34 34 H 1.08998 * 110.36190 * 241.15400 * 14 13 11 35 35 H 1.08999 * 110.45400 * 118.88678 * 14 13 11 36 36 H 1.08995 * 109.75065 * 346.87692 * 17 9 7 37 37 H 1.08999 * 109.75170 * 107.61045 * 17 9 7 38 38 H 1.08004 * 120.04204 * 359.97438 * 22 21 19 39 39 H 1.08004 * 119.89642 * 180.27372 * 23 22 21 40 40 H 1.07989 * 119.85726 * 179.74790 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4392 2.0801 1.3985 5 1 3.5759 1.4238 -0.6406 6 1 1.4783 2.6350 -0.7577 7 6 2.0102 -1.2022 -0.0005 8 1 3.0609 -1.2191 -0.2498 9 7 1.3627 -2.3668 0.3150 10 6 1.8822 -3.6643 -0.1457 11 6 1.8822 -4.6299 1.0524 12 1 2.2883 -5.6072 0.7915 13 6 2.6552 -3.9522 2.2065 14 6 1.5882 -3.1495 2.9794 15 6 0.2674 -3.4145 2.2218 16 1 -0.5930 -3.4375 2.8904 17 6 0.1356 -2.3481 1.1271 18 7 0.4863 -4.7167 1.5460 19 6 -0.3807 -5.7397 1.4113 20 8 -0.0883 -6.6977 0.7225 21 6 -1.6869 -5.6968 2.1013 22 6 -2.3068 -4.4713 2.3533 23 6 -3.5283 -4.4372 2.9923 24 6 -4.1370 -5.6133 3.3946 25 6 -3.5270 -6.8329 3.1544 26 9 -4.1269 -7.9768 3.5504 27 6 -2.3038 -6.8815 2.5090 28 17 -1.5388 -8.4103 2.2070 29 1 -0.4849 0.8401 -0.0004 30 1 1.2427 -4.0576 -0.9358 31 1 2.8983 -3.5418 -0.5210 32 1 3.1067 -4.7042 2.8536 33 1 3.4194 -3.2837 1.8100 34 1 1.8277 -2.0863 2.9629 35 1 1.5143 -3.5051 4.0070 36 1 0.0111 -1.3663 1.5839 37 1 -0.7256 -2.5744 0.4986 38 1 -1.8322 -3.5516 2.0445 39 1 -4.0097 -3.4894 3.1832 40 1 -5.0917 -5.5796 3.8981 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017992970.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:46 Heat of formation + Delta-G solvation = 1.169475 kcal Electronic energy + Delta-G solvation = -27926.985730 eV Core-core repulsion = 23876.968333 eV Total energy + Delta-G solvation = -4050.017397 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.12767 -40.62930 -38.99755 -37.48743 -36.48310 -34.21182 -32.31572 -31.07070 -30.81365 -30.69549 -29.96972 -26.48541 -24.53894 -23.75427 -23.01743 -22.71253 -21.01811 -20.29226 -18.80678 -17.96553 -16.94319 -16.73261 -16.50039 -16.03682 -15.77244 -15.33656 -15.01839 -14.63977 -14.52596 -14.29158 -13.57608 -13.51819 -13.29321 -13.13468 -12.92069 -12.74543 -12.35611 -12.01331 -11.89677 -11.82395 -11.61809 -11.56946 -11.14770 -10.97734 -10.93213 -10.57351 -10.52329 -10.37644 -10.08360 -9.87467 -9.76004 -9.48250 -9.16079 -8.85334 -8.65133 -8.29952 -6.83773 -5.90694 -3.30927 0.53632 0.78966 1.97847 2.80090 3.11036 3.29765 3.38139 3.38769 3.51211 3.93086 4.36545 4.38302 4.62700 4.71548 4.91832 5.00125 5.11930 5.26591 5.28608 5.31896 5.50004 5.56376 5.65283 5.71808 5.76328 5.84747 5.99338 6.04647 6.05689 6.21613 6.31190 6.35577 6.42481 6.49697 6.66651 6.77381 6.89285 7.08988 7.36645 7.64831 7.96398 8.25021 8.42233 9.06116 9.68352 10.23506 11.17738 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.019162 B = 0.003773 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.864036 B = 7419.578580 C = 8303.145541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.001 3.999 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.279 1.279 6 H -0.292 1.292 7 C -0.247 4.247 8 H 0.071 0.929 9 N -0.587 5.587 10 C 0.137 3.863 11 C 0.118 3.882 12 H 0.091 0.909 13 C -0.111 4.111 14 C -0.112 4.112 15 C 0.077 3.923 16 H 0.097 0.903 17 C 0.167 3.833 18 N -0.597 5.597 19 C 0.570 3.430 20 O -0.529 6.529 21 C -0.085 4.085 22 C -0.098 4.098 23 C -0.092 4.092 24 C -0.126 4.126 25 C 0.096 3.904 26 F -0.127 7.127 27 C -0.033 4.033 28 Cl -0.024 7.024 29 H 0.255 0.745 30 H 0.023 0.977 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.104 0.896 37 H 0.023 0.977 38 H 0.165 0.835 39 H 0.147 0.853 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.289 -8.581 9.556 13.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.197 4.197 3 Si 0.735 3.265 4 H -0.214 1.214 5 H -0.205 1.205 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.310 5.310 10 C 0.010 3.990 11 C 0.014 3.986 12 H 0.110 0.890 13 C -0.150 4.150 14 C -0.151 4.151 15 C -0.027 4.027 16 H 0.115 0.885 17 C 0.041 3.959 18 N -0.329 5.329 19 C 0.357 3.643 20 O -0.407 6.407 21 C -0.089 4.089 22 C -0.117 4.117 23 C -0.110 4.110 24 C -0.145 4.145 25 C 0.076 3.924 26 F -0.106 7.106 27 C -0.061 4.061 28 Cl 0.006 6.994 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.122 0.878 37 H 0.041 0.959 38 H 0.182 0.818 39 H 0.165 0.835 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.224 -9.202 9.117 13.967 hybrid contribution 0.182 0.572 -0.003 0.600 sum -5.042 -8.630 9.114 13.527 Atomic orbital electron populations 1.69978 1.05149 1.25556 1.54744 1.24949 0.95379 0.98247 1.01143 0.86232 0.79065 0.83578 0.77626 1.21445 1.20475 1.21807 1.19247 0.92374 0.84172 1.41814 0.91118 1.44033 1.27982 1.00887 1.58070 1.21471 0.98316 0.86614 0.92626 1.22919 0.80294 0.99260 0.96097 0.89047 1.22310 0.98068 0.98471 0.96125 1.22327 0.94053 1.01929 0.96779 1.23836 0.98463 0.83790 0.96608 0.88539 1.21332 0.88492 0.96444 0.89668 1.49090 1.13911 1.15335 1.54575 1.17440 0.83061 0.82028 0.81737 1.90811 1.76819 1.33325 1.39746 1.19750 0.96637 0.91891 1.00628 1.22195 0.95095 0.97996 0.96398 1.21152 0.94553 0.98371 0.96900 1.21299 1.01314 0.90389 1.01530 1.17244 0.91441 0.82982 1.00737 1.91538 1.82586 1.47831 1.88609 1.20978 0.93888 0.89190 1.02085 1.98414 1.80388 1.26427 1.94193 0.93513 0.95886 0.91714 0.92803 0.89772 0.89357 0.92973 0.87805 0.95907 0.81788 0.83486 0.83545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.03 10.89 55.49 0.60 -23.43 16 2 C 0.00 0.02 5.00 -17.43 -0.09 -0.07 16 3 Si 0.90 20.19 29.58 -169.99 -5.03 15.16 16 4 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.25 -6.10 9.68 -15.06 -0.15 -6.25 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.31 16 9 N -0.59 -13.15 2.31 -171.39 -0.40 -13.54 16 10 C 0.14 2.73 6.02 -3.22 -0.02 2.71 16 11 C 0.12 2.06 4.10 -65.66 -0.27 1.79 16 12 H 0.09 1.55 7.97 -51.93 -0.41 1.14 16 13 C -0.11 -1.73 6.18 -25.25 -0.16 -1.89 16 14 C -0.11 -1.76 6.18 -25.25 -0.16 -1.92 16 15 C 0.08 1.27 2.99 -65.90 -0.20 1.08 16 16 H 0.10 1.38 4.87 -51.93 -0.25 1.12 16 17 C 0.17 3.47 4.13 -3.48 -0.01 3.46 16 18 N -0.60 -10.49 2.75 -154.41 -0.42 -10.92 16 19 C 0.57 10.39 7.48 -12.36 -0.09 10.29 16 20 O -0.53 -10.93 15.13 5.31 0.08 -10.85 16 21 C -0.09 -1.32 5.75 -104.95 -0.60 -1.92 16 22 C -0.10 -1.29 7.97 -39.19 -0.31 -1.60 16 23 C -0.09 -0.92 10.03 -39.65 -0.40 -1.32 16 24 C -0.13 -1.26 10.02 -39.44 -0.40 -1.65 16 25 C 0.10 1.22 7.27 -39.44 -0.29 0.93 16 26 F -0.13 -1.62 16.83 2.25 0.04 -1.58 16 27 C -0.03 -0.48 6.34 -39.00 -0.25 -0.73 16 28 Cl -0.02 -0.37 26.16 -51.86 -1.36 -1.73 16 29 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 1.23 7.95 -51.92 -0.41 0.81 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.36 7.84 -51.93 -0.41 0.96 16 34 H 0.09 1.52 7.83 -51.93 -0.41 1.11 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 2.37 6.05 -51.93 -0.31 2.05 16 37 H 0.02 0.53 7.67 -51.93 -0.40 0.13 16 38 H 0.16 2.25 4.17 -52.48 -0.22 2.04 16 39 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 40 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 335.16 15.07 5.05 5.05 Total: -1.00 -28.83 335.16 -9.30 -38.13 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.48 Total: 0.79 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -3.38 Total: 2.91 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.22 Total: -47.89 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.08 Total: -10.85 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.36 Total: -1.73 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.83 -9.30 -38.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017992970.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.295 kcal (2) G-P(sol) polarization free energy of solvation -28.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds