Wall clock time and date at job start Tue Mar 31 2020 20:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86791 * 120.00302 * 2 1 4 4 H 1.48506 * 109.46983 * 87.23052 * 3 2 1 5 5 H 1.48505 * 109.47485 * 207.22895 * 3 2 1 6 6 H 1.48497 * 109.47353 * 327.23347 * 3 2 1 7 7 C 1.38813 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00111 * 164.54373 * 7 2 1 9 9 N 1.36934 * 120.00155 * 344.54396 * 7 2 1 10 10 C 1.47164 * 120.71375 * 156.89852 * 9 7 2 11 11 C 1.53880 * 108.03332 * 132.75485 * 10 9 7 12 12 H 1.08996 * 112.10302 * 181.91308 * 11 10 9 13 13 C 1.54553 * 107.83056 * 306.51187 * 11 10 9 14 14 C 1.54279 * 104.85145 * 89.07011 * 13 11 10 15 15 C 1.54544 * 104.84981 * 359.97438 * 14 13 11 16 16 H 1.08993 * 112.18413 * 146.41029 * 15 14 13 17 17 C 1.47160 * 120.70914 * 336.61921 * 9 7 2 18 18 N 1.48311 * 107.20696 * 58.36472 * 11 10 9 19 19 C 1.34772 * 128.07678 * 106.70112 * 18 11 10 20 20 O 1.21560 * 120.00076 * 353.38587 * 19 18 11 21 21 C 1.47781 * 119.99734 * 173.37929 * 19 18 11 22 22 C 1.39632 * 120.14407 * 29.84482 * 21 19 18 23 23 C 1.37893 * 119.91317 * 179.71897 * 22 21 19 24 24 C 1.38401 * 120.21179 * 0.52734 * 23 22 21 25 25 C 1.38464 * 120.28857 * 359.76539 * 24 23 22 26 26 F 1.35098 * 119.96027 * 179.97438 * 25 24 23 27 27 C 1.38392 * 120.08110 * 359.95882 * 25 24 23 28 28 Cl 1.73592 * 120.10476 * 180.02562 * 27 25 24 29 29 H 0.96997 * 119.99628 * 0.02562 * 1 2 3 30 30 H 1.08992 * 109.75077 * 252.39565 * 10 9 7 31 31 H 1.09009 * 109.74582 * 13.07612 * 10 9 7 32 32 H 1.09004 * 110.35922 * 207.91483 * 13 11 10 33 33 H 1.08998 * 110.36256 * 330.22422 * 13 11 10 34 34 H 1.08998 * 110.36190 * 241.15400 * 14 13 11 35 35 H 1.08999 * 110.45400 * 118.88678 * 14 13 11 36 36 H 1.08995 * 109.75065 * 346.87692 * 17 9 7 37 37 H 1.08999 * 109.75170 * 107.61045 * 17 9 7 38 38 H 1.08004 * 120.04204 * 359.97438 * 22 21 19 39 39 H 1.08004 * 119.89642 * 180.27372 * 23 22 21 40 40 H 1.07989 * 119.85726 * 179.74790 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4392 2.0801 1.3985 5 1 3.5759 1.4238 -0.6406 6 1 1.4783 2.6350 -0.7577 7 6 2.0102 -1.2022 -0.0005 8 1 3.0609 -1.2191 -0.2498 9 7 1.3627 -2.3668 0.3150 10 6 1.8822 -3.6643 -0.1457 11 6 1.8822 -4.6299 1.0524 12 1 2.2883 -5.6072 0.7915 13 6 2.6552 -3.9522 2.2065 14 6 1.5882 -3.1495 2.9794 15 6 0.2674 -3.4145 2.2218 16 1 -0.5930 -3.4375 2.8904 17 6 0.1356 -2.3481 1.1271 18 7 0.4863 -4.7167 1.5460 19 6 -0.3807 -5.7397 1.4113 20 8 -0.0883 -6.6977 0.7225 21 6 -1.6869 -5.6968 2.1013 22 6 -2.3068 -4.4713 2.3533 23 6 -3.5283 -4.4372 2.9923 24 6 -4.1370 -5.6133 3.3946 25 6 -3.5270 -6.8329 3.1544 26 9 -4.1269 -7.9768 3.5504 27 6 -2.3038 -6.8815 2.5090 28 17 -1.5388 -8.4103 2.2070 29 1 -0.4849 0.8401 -0.0004 30 1 1.2427 -4.0576 -0.9358 31 1 2.8983 -3.5418 -0.5210 32 1 3.1067 -4.7042 2.8536 33 1 3.4194 -3.2837 1.8100 34 1 1.8277 -2.0863 2.9629 35 1 1.5143 -3.5051 4.0070 36 1 0.0111 -1.3663 1.5839 37 1 -0.7256 -2.5744 0.4986 38 1 -1.8322 -3.5516 2.0445 39 1 -4.0097 -3.4894 3.1832 40 1 -5.0917 -5.5796 3.8981 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017992970.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:46 Heat of formation + Delta-G solvation = -13.428620 kcal Electronic energy + Delta-G solvation = -27927.618751 eV Core-core repulsion = 23876.968333 eV Total energy + Delta-G solvation = -4050.650418 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.09862 -41.97841 -40.18273 -38.84719 -37.60362 -35.95109 -33.67697 -32.59495 -32.22707 -31.90585 -31.15686 -28.17795 -25.85739 -25.26557 -24.31798 -23.90352 -22.43246 -21.61888 -20.16690 -19.41314 -18.10109 -17.94090 -17.77825 -17.29483 -16.90366 -16.78969 -16.41357 -16.20288 -15.75902 -15.42241 -15.25604 -14.86538 -14.64768 -14.41491 -14.32821 -13.92840 -13.69514 -13.59350 -13.21375 -13.10774 -12.80226 -12.78398 -12.69226 -12.60311 -12.20252 -12.17119 -12.07522 -12.02813 -11.70110 -11.46842 -11.14200 -10.85897 -10.55026 -10.19822 -9.87564 -9.79588 -8.67264 -7.82614 -5.25540 -0.48695 -0.18629 0.89242 1.52033 1.55020 1.61351 1.62017 1.81089 2.38860 2.54515 2.90542 3.27098 3.32788 3.48989 3.67585 3.72220 3.85060 3.91732 4.02732 4.10658 4.22228 4.26862 4.38627 4.52046 4.58806 4.64082 4.75471 4.79516 4.87403 4.97339 5.05900 5.07901 5.12078 5.16726 5.28475 5.39194 5.53819 5.58793 5.61749 5.70564 6.36706 6.56933 7.02473 7.16408 7.83122 8.35773 9.23429 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.019162 B = 0.003773 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.864036 B = 7419.578580 C = 8303.145541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.044 4.044 3 Si 0.964 3.036 4 H -0.281 1.281 5 H -0.275 1.275 6 H -0.301 1.301 7 C -0.252 4.252 8 H 0.071 0.929 9 N -0.598 5.598 10 C 0.137 3.863 11 C 0.120 3.880 12 H 0.095 0.905 13 C -0.103 4.103 14 C -0.108 4.108 15 C 0.089 3.911 16 H 0.126 0.874 17 C 0.178 3.822 18 N -0.599 5.599 19 C 0.564 3.436 20 O -0.563 6.563 21 C -0.108 4.108 22 C -0.103 4.103 23 C -0.074 4.074 24 C -0.102 4.102 25 C 0.091 3.909 26 F -0.129 7.129 27 C -0.050 4.050 28 Cl -0.043 7.043 29 H 0.251 0.749 30 H -0.006 1.006 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.084 0.916 37 H -0.008 1.008 38 H 0.155 0.845 39 H 0.187 0.813 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.216 -8.112 11.870 15.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.239 4.239 3 Si 0.793 3.207 4 H -0.208 1.208 5 H -0.200 1.200 6 H -0.229 1.229 7 C -0.382 4.382 8 H 0.089 0.911 9 N -0.321 5.321 10 C 0.011 3.989 11 C 0.016 3.984 12 H 0.113 0.887 13 C -0.141 4.141 14 C -0.147 4.147 15 C -0.014 4.014 16 H 0.143 0.857 17 C 0.052 3.948 18 N -0.331 5.331 19 C 0.354 3.646 20 O -0.443 6.443 21 C -0.111 4.111 22 C -0.121 4.121 23 C -0.091 4.091 24 C -0.121 4.121 25 C 0.071 3.929 26 F -0.107 7.107 27 C -0.078 4.078 28 Cl -0.014 7.014 29 H 0.060 0.940 30 H 0.012 0.988 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.010 0.990 38 H 0.172 0.828 39 H 0.204 0.796 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -6.138 -8.744 11.447 15.658 hybrid contribution 0.386 0.413 -0.785 0.967 sum -5.752 -8.331 10.663 14.703 Atomic orbital electron populations 1.70127 1.06284 1.25754 1.56116 1.25571 0.96023 1.00778 1.01573 0.85301 0.77870 0.79957 0.77527 1.20802 1.19993 1.22860 1.19513 0.92580 0.85094 1.41002 0.91087 1.44232 1.28269 1.01077 1.58538 1.21503 0.97841 0.86326 0.93263 1.22834 0.81067 0.98730 0.95766 0.88688 1.22261 0.97623 0.98731 0.95515 1.22307 0.93046 1.01079 0.98231 1.23678 1.00486 0.81830 0.95409 0.85689 1.21111 0.86794 0.96895 0.90028 1.49153 1.13856 1.15550 1.54534 1.17963 0.83925 0.81493 0.81249 1.90778 1.77737 1.34576 1.41188 1.19569 0.95918 0.93211 1.02452 1.22168 0.96445 0.96483 0.97016 1.21564 0.92876 1.00150 0.94540 1.21762 1.02073 0.88761 0.99497 1.17463 0.90827 0.83974 1.00620 1.91538 1.82396 1.48200 1.88566 1.21131 0.94964 0.88242 1.03507 1.98399 1.80941 1.27572 1.94461 0.93992 0.98816 0.91000 0.90287 0.90476 0.90920 0.89922 0.89774 0.99001 0.82811 0.79610 0.79445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -50.40 10.89 21.65 0.24 -50.17 16 2 C -0.04 -2.26 5.00 84.86 0.42 -1.84 16 3 Si 0.96 41.65 29.58 68.60 2.03 43.68 16 4 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 7 C -0.25 -12.60 9.68 84.03 0.81 -11.79 16 8 H 0.07 3.48 7.85 -2.91 -0.02 3.46 16 9 N -0.60 -27.34 2.31 -696.17 -1.61 -28.95 16 10 C 0.14 5.64 6.02 86.55 0.52 6.16 16 11 C 0.12 4.17 4.10 45.47 0.19 4.36 16 12 H 0.10 3.24 7.97 -2.39 -0.02 3.22 16 13 C -0.10 -3.05 6.18 31.56 0.20 -2.85 16 14 C -0.11 -3.19 6.18 31.55 0.20 -2.99 16 15 C 0.09 2.89 2.99 45.30 0.14 3.02 16 16 H 0.13 3.35 4.87 -2.39 -0.01 3.33 16 17 C 0.18 7.54 4.13 86.39 0.36 7.89 16 18 N -0.60 -21.01 2.75 -760.72 -2.09 -23.10 16 19 C 0.56 20.77 7.48 86.77 0.65 21.42 16 20 O -0.56 -23.89 15.13 -3.90 -0.06 -23.95 16 21 C -0.11 -3.26 5.75 -20.07 -0.12 -3.38 16 22 C -0.10 -2.48 7.97 22.52 0.18 -2.30 16 23 C -0.07 -1.18 10.03 22.23 0.22 -0.96 16 24 C -0.10 -1.58 10.02 22.36 0.22 -1.36 16 25 C 0.09 2.09 7.27 22.36 0.16 2.25 16 26 F -0.13 -3.00 16.83 44.97 0.76 -2.24 16 27 C -0.05 -1.43 6.34 22.65 0.14 -1.29 16 28 Cl -0.04 -1.36 26.16 -2.72 -0.07 -1.43 16 29 H 0.25 13.17 8.31 -92.71 -0.77 12.39 16 30 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.07 2.78 7.95 -2.38 -0.02 2.77 16 32 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.08 2.41 7.84 -2.39 -0.02 2.39 16 34 H 0.07 2.40 7.83 -2.39 -0.02 2.39 16 35 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.08 3.91 6.05 -2.39 -0.01 3.90 16 37 H -0.01 -0.38 7.67 -2.39 -0.02 -0.40 16 38 H 0.15 4.06 4.17 -2.91 -0.01 4.04 16 39 H 0.19 1.61 8.06 -2.91 -0.02 1.58 16 40 H 0.19 1.44 8.06 -2.92 -0.02 1.42 16 Total: -1.00 -64.98 335.16 4.58 -60.40 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 1.09 Total: 9.41 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 4.29 Total: 16.34 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -3.46 Total: -102.22 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.06 Total: -23.95 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.76 Total: -2.24 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.07 Total: -1.43 kcal Total: -64.98 4.58 -60.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017992970.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.971 kcal (2) G-P(sol) polarization free energy of solvation -64.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds