Wall clock time and date at job start Tue Mar 31 2020 20:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99692 * 2 1 4 4 H 1.48501 * 109.47194 * 270.00214 * 3 2 1 5 5 H 1.48497 * 109.47126 * 30.00202 * 3 2 1 6 6 H 1.48495 * 109.47186 * 150.00100 * 3 2 1 7 7 C 1.38812 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99487 * 195.72240 * 7 2 1 9 9 N 1.36933 * 120.00149 * 15.72882 * 7 2 1 10 10 C 1.47164 * 120.71320 * 25.98476 * 9 7 2 11 11 C 1.53884 * 108.03163 * 132.73429 * 10 9 7 12 12 H 1.09004 * 112.57464 * 182.22026 * 11 10 9 13 13 C 1.54545 * 107.83410 * 306.50375 * 11 10 9 14 14 C 1.54274 * 104.94435 * 89.00960 * 13 11 10 15 15 C 1.54794 * 104.72924 * 0.09012 * 14 13 11 16 16 H 1.09005 * 112.69566 * 146.63809 * 15 14 13 17 17 C 1.47165 * 120.70830 * 205.96411 * 9 7 2 18 18 N 1.48304 * 104.40270 * 24.61684 * 15 14 13 19 19 C 1.34781 * 128.07721 * 139.12242 * 18 15 14 20 20 O 1.21579 * 120.00094 * 174.75590 * 19 18 15 21 21 C 1.47643 * 119.99831 * 354.75056 * 19 18 15 22 22 C 1.39694 * 120.13096 * 42.42243 * 21 19 18 23 23 C 1.37783 * 119.89429 * 179.97438 * 22 21 19 24 24 C 1.38715 * 120.15253 * 0.02562 * 23 22 21 25 25 F 1.35107 * 119.86760 * 179.97438 * 24 23 22 26 26 C 1.38562 * 120.26912 * 359.97438 * 24 23 22 27 27 C 1.38041 * 120.10110 * 359.73983 * 26 24 23 28 28 Cl 1.73594 * 120.07924 * 180.25837 * 27 26 24 29 29 H 0.96998 * 120.00601 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.74520 * 13.10270 * 10 9 7 31 31 H 1.08992 * 109.74974 * 252.37261 * 10 9 7 32 32 H 1.09002 * 110.36712 * 207.91404 * 13 11 10 33 33 H 1.09004 * 110.36354 * 330.11488 * 13 11 10 34 34 H 1.09006 * 110.36559 * 118.90268 * 14 13 11 35 35 H 1.08998 * 110.36974 * 241.21789 * 14 13 11 36 36 H 1.09005 * 109.74937 * 107.63425 * 17 9 7 37 37 H 1.08997 * 109.79073 * 346.92254 * 17 9 7 38 38 H 1.08003 * 120.05728 * 359.94941 * 22 21 19 39 39 H 1.07991 * 119.92057 * 179.97438 * 23 22 21 40 40 H 1.07994 * 119.95678 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0600 -1.2196 0.2529 9 7 1.3641 -2.3657 -0.3225 10 6 0.1730 -2.3497 -1.1867 11 6 0.3469 -3.4408 -2.2578 12 1 -0.4814 -3.4680 -2.9658 13 6 1.7048 -3.2053 -2.9572 14 6 2.7270 -4.0016 -2.1199 15 6 1.8908 -4.6489 -0.9895 16 1 2.2726 -5.6251 -0.6901 17 6 1.8462 -3.6591 0.1879 18 7 0.5186 -4.7306 -1.5462 19 6 -0.3659 -5.7412 -1.4321 20 8 -1.4931 -5.6147 -1.8698 21 6 0.0341 -7.0017 -0.7757 22 6 0.7937 -6.9718 0.3962 23 6 1.1639 -8.1511 1.0050 24 6 0.7844 -9.3674 0.4565 25 9 1.1510 -10.5203 1.0580 26 6 0.0309 -9.4047 -0.7057 27 6 -0.3508 -8.2297 -1.3214 28 17 -1.3005 -8.2771 -2.7737 29 1 -0.4851 0.8400 0.0004 30 1 0.0787 -1.3751 -1.6657 31 1 -0.7165 -2.5560 -0.5917 32 1 1.6755 -3.5828 -3.9794 33 1 1.9550 -2.1444 -2.9525 34 1 3.2004 -4.7707 -2.7303 35 1 3.4786 -3.3321 -1.7018 36 1 1.1657 -4.0292 0.9547 37 1 2.8451 -3.5409 0.6078 38 1 1.0908 -6.0257 0.8243 39 1 1.7515 -8.1284 1.9108 40 1 -0.2621 -10.3545 -1.1281 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018237390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:51 Heat of formation + Delta-G solvation = -12.541261 kcal Electronic energy + Delta-G solvation = -27732.484207 eV Core-core repulsion = 23681.872267 eV Total energy + Delta-G solvation = -4050.611939 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.27351 -40.57342 -39.07927 -37.44877 -36.56968 -34.18206 -32.09012 -31.32846 -31.09163 -30.42515 -30.08049 -26.39815 -24.25607 -23.74367 -23.38544 -22.70179 -20.98586 -20.23765 -18.66195 -18.00622 -17.69264 -16.81953 -16.27828 -15.99204 -15.66506 -15.25415 -15.04517 -14.58055 -14.42404 -14.18591 -13.86711 -13.57138 -13.55961 -13.18135 -12.92731 -12.76221 -12.72120 -12.18613 -11.97077 -11.65368 -11.60101 -11.42163 -11.17518 -11.09344 -10.90933 -10.62203 -10.52834 -10.38226 -10.04693 -9.91763 -9.73693 -9.57205 -9.28378 -8.95519 -8.60826 -8.27877 -6.78976 -5.87134 -3.31030 0.46042 0.73772 1.86057 2.73599 3.15354 3.31664 3.38849 3.40358 3.40860 3.86617 4.34412 4.39774 4.48396 4.57943 4.86188 4.99541 5.07864 5.21488 5.27518 5.30710 5.46257 5.51704 5.54258 5.70081 5.71928 5.76617 5.82824 6.02825 6.10980 6.26422 6.31222 6.33795 6.37217 6.51771 6.56664 6.64984 6.89976 7.23188 7.51479 7.68413 7.97981 8.28861 8.43900 9.08227 9.70703 10.26940 11.20744 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.018872 B = 0.003563 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.291367 B = 7856.820155 C = 8582.307156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.005 3.995 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.585 5.585 10 C 0.173 3.827 11 C 0.107 3.893 12 H 0.089 0.911 13 C -0.113 4.113 14 C -0.110 4.110 15 C 0.098 3.902 16 H 0.089 0.911 17 C 0.135 3.865 18 N -0.597 5.597 19 C 0.570 3.430 20 O -0.527 6.527 21 C -0.119 4.119 22 C -0.052 4.052 23 C -0.153 4.153 24 C 0.126 3.874 25 F -0.131 7.131 26 C -0.156 4.156 27 C 0.032 3.968 28 Cl -0.032 7.032 29 H 0.256 0.744 30 H 0.094 0.906 31 H 0.026 0.974 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.019 0.981 37 H 0.066 0.934 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.273 -16.767 -2.193 17.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.194 4.194 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.308 5.308 10 C 0.047 3.953 11 C 0.004 3.996 12 H 0.108 0.892 13 C -0.151 4.151 14 C -0.148 4.148 15 C -0.007 4.007 16 H 0.106 0.894 17 C 0.008 3.992 18 N -0.329 5.329 19 C 0.358 3.642 20 O -0.405 6.405 21 C -0.123 4.123 22 C -0.070 4.070 23 C -0.172 4.172 24 C 0.106 3.894 25 F -0.109 7.109 26 C -0.176 4.176 27 C 0.004 3.996 28 Cl -0.002 7.002 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.036 0.964 37 H 0.084 0.916 38 H 0.173 0.827 39 H 0.166 0.834 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.406 -16.638 -2.514 17.168 hybrid contribution 0.366 0.569 0.163 0.696 sum 3.772 -16.069 -2.351 16.672 Atomic orbital electron populations 1.70015 1.05236 1.25730 1.53602 1.25039 0.95286 0.98393 1.00652 0.86278 0.79014 0.83642 0.77727 1.21368 1.21789 1.20460 1.19157 0.92207 0.84236 1.42897 0.91302 1.44036 1.31643 1.00981 1.54154 1.21305 0.88670 0.95888 0.89484 1.23290 0.97631 0.83038 0.95641 0.89250 1.22331 0.94118 1.01842 0.96849 1.22323 0.97879 0.98610 0.95998 1.23292 0.81797 0.99046 0.96557 0.89351 1.21498 0.98397 0.87307 0.92006 1.49117 1.14969 1.16630 1.52202 1.17429 0.84652 0.81969 0.80183 1.90819 1.18792 1.81390 1.49484 1.19988 1.01329 0.93201 0.97749 1.21509 0.93250 0.99357 0.92899 1.21210 1.03252 0.90510 1.02239 1.17631 0.97452 0.81942 0.92331 1.91539 1.89576 1.47367 1.82460 1.20886 1.01780 0.98696 0.96191 1.20594 0.95554 0.92643 0.90799 1.98422 1.69590 1.98694 1.33505 0.93424 0.88764 0.95550 0.93029 0.89406 0.92813 0.89767 0.96375 0.91554 0.82729 0.83360 0.83208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.00 11.10 55.49 0.62 -24.38 16 2 C 0.01 0.14 4.96 -17.43 -0.09 0.05 16 3 Si 0.90 20.52 29.58 -169.99 -5.03 15.49 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.26 -6.35 9.64 -15.06 -0.15 -6.49 16 8 H 0.07 1.66 7.87 -52.48 -0.41 1.25 16 9 N -0.58 -13.13 2.28 -171.08 -0.39 -13.52 16 10 C 0.17 3.93 4.60 -3.22 -0.01 3.91 16 11 C 0.11 2.03 4.10 -65.66 -0.27 1.76 16 12 H 0.09 1.71 7.97 -51.93 -0.41 1.30 16 13 C -0.11 -1.87 6.18 -25.25 -0.16 -2.02 16 14 C -0.11 -1.63 6.20 -25.12 -0.16 -1.79 16 15 C 0.10 1.49 3.04 -65.53 -0.20 1.29 16 16 H 0.09 1.11 5.82 -51.93 -0.30 0.81 16 17 C 0.14 2.45 5.66 -3.22 -0.02 2.43 16 18 N -0.60 -10.43 2.74 -154.06 -0.42 -10.85 16 19 C 0.57 10.19 7.15 -12.42 -0.09 10.10 16 20 O -0.53 -11.02 15.77 5.30 0.08 -10.93 16 21 C -0.12 -1.71 5.50 -104.94 -0.58 -2.29 16 22 C -0.05 -0.61 7.76 -39.20 -0.30 -0.92 16 23 C -0.15 -1.51 10.01 -39.57 -0.40 -1.91 16 24 C 0.13 1.30 7.30 -39.29 -0.29 1.02 16 25 F -0.13 -1.34 17.26 2.25 0.04 -1.30 16 26 C -0.16 -1.67 9.79 -39.53 -0.39 -2.06 16 27 C 0.03 0.42 6.33 -39.08 -0.25 0.18 16 28 Cl -0.03 -0.44 26.90 -51.86 -1.40 -1.83 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.09 2.37 6.27 -51.93 -0.33 2.04 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 1.59 7.84 -51.93 -0.41 1.18 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.30 7.84 -51.93 -0.41 0.89 16 36 H 0.02 0.35 7.06 -51.93 -0.37 -0.02 16 37 H 0.07 1.12 7.96 -51.93 -0.41 0.70 16 38 H 0.16 1.84 5.14 -52.48 -0.27 1.57 16 39 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 337.82 15.07 5.09 5.09 Total: -1.00 -29.25 337.82 -9.31 -38.56 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -4.57 Total: 0.41 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -3.33 Total: 3.27 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: -0.20 Total: -48.76 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.40 Total: -1.83 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.25 -9.31 -38.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018237390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.016 kcal (2) G-P(sol) polarization free energy of solvation -29.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds