Wall clock time and date at job start Tue Mar 31 2020 20:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99692 * 2 1 4 4 H 1.48501 * 109.47194 * 270.00214 * 3 2 1 5 5 H 1.48497 * 109.47126 * 30.00202 * 3 2 1 6 6 H 1.48495 * 109.47186 * 150.00100 * 3 2 1 7 7 C 1.38812 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99487 * 195.72240 * 7 2 1 9 9 N 1.36933 * 120.00149 * 15.72882 * 7 2 1 10 10 C 1.47164 * 120.71320 * 25.98476 * 9 7 2 11 11 C 1.53884 * 108.03163 * 132.73429 * 10 9 7 12 12 H 1.09004 * 112.57464 * 182.22026 * 11 10 9 13 13 C 1.54545 * 107.83410 * 306.50375 * 11 10 9 14 14 C 1.54274 * 104.94435 * 89.00960 * 13 11 10 15 15 C 1.54794 * 104.72924 * 0.09012 * 14 13 11 16 16 H 1.09005 * 112.69566 * 146.63809 * 15 14 13 17 17 C 1.47165 * 120.70830 * 205.96411 * 9 7 2 18 18 N 1.48304 * 104.40270 * 24.61684 * 15 14 13 19 19 C 1.34781 * 128.07721 * 139.12242 * 18 15 14 20 20 O 1.21579 * 120.00094 * 174.75590 * 19 18 15 21 21 C 1.47643 * 119.99831 * 354.75056 * 19 18 15 22 22 C 1.39694 * 120.13096 * 42.42243 * 21 19 18 23 23 C 1.37783 * 119.89429 * 179.97438 * 22 21 19 24 24 C 1.38715 * 120.15253 * 0.02562 * 23 22 21 25 25 F 1.35107 * 119.86760 * 179.97438 * 24 23 22 26 26 C 1.38562 * 120.26912 * 359.97438 * 24 23 22 27 27 C 1.38041 * 120.10110 * 359.73983 * 26 24 23 28 28 Cl 1.73594 * 120.07924 * 180.25837 * 27 26 24 29 29 H 0.96998 * 120.00601 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.74520 * 13.10270 * 10 9 7 31 31 H 1.08992 * 109.74974 * 252.37261 * 10 9 7 32 32 H 1.09002 * 110.36712 * 207.91404 * 13 11 10 33 33 H 1.09004 * 110.36354 * 330.11488 * 13 11 10 34 34 H 1.09006 * 110.36559 * 118.90268 * 14 13 11 35 35 H 1.08998 * 110.36974 * 241.21789 * 14 13 11 36 36 H 1.09005 * 109.74937 * 107.63425 * 17 9 7 37 37 H 1.08997 * 109.79073 * 346.92254 * 17 9 7 38 38 H 1.08003 * 120.05728 * 359.94941 * 22 21 19 39 39 H 1.07991 * 119.92057 * 179.97438 * 23 22 21 40 40 H 1.07994 * 119.95678 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0600 -1.2196 0.2529 9 7 1.3641 -2.3657 -0.3225 10 6 0.1730 -2.3497 -1.1867 11 6 0.3469 -3.4408 -2.2578 12 1 -0.4814 -3.4680 -2.9658 13 6 1.7048 -3.2053 -2.9572 14 6 2.7270 -4.0016 -2.1199 15 6 1.8908 -4.6489 -0.9895 16 1 2.2726 -5.6251 -0.6901 17 6 1.8462 -3.6591 0.1879 18 7 0.5186 -4.7306 -1.5462 19 6 -0.3659 -5.7412 -1.4321 20 8 -1.4931 -5.6147 -1.8698 21 6 0.0341 -7.0017 -0.7757 22 6 0.7937 -6.9718 0.3962 23 6 1.1639 -8.1511 1.0050 24 6 0.7844 -9.3674 0.4565 25 9 1.1510 -10.5203 1.0580 26 6 0.0309 -9.4047 -0.7057 27 6 -0.3508 -8.2297 -1.3214 28 17 -1.3005 -8.2771 -2.7737 29 1 -0.4851 0.8400 0.0004 30 1 0.0787 -1.3751 -1.6657 31 1 -0.7165 -2.5560 -0.5917 32 1 1.6755 -3.5828 -3.9794 33 1 1.9550 -2.1444 -2.9525 34 1 3.2004 -4.7707 -2.7303 35 1 3.4786 -3.3321 -1.7018 36 1 1.1657 -4.0292 0.9547 37 1 2.8451 -3.5409 0.6078 38 1 1.0908 -6.0257 0.8243 39 1 1.7515 -8.1284 1.9108 40 1 -0.2621 -10.3545 -1.1281 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018237390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:50 Heat of formation + Delta-G solvation = -27.791470 kcal Electronic energy + Delta-G solvation = -27733.145506 eV Core-core repulsion = 23681.872267 eV Total energy + Delta-G solvation = -4051.273238 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.08610 -41.89826 -40.22769 -38.81169 -37.56978 -35.94211 -33.32005 -33.01433 -32.07811 -31.94490 -31.26029 -28.12720 -25.58549 -25.26382 -24.29515 -24.14152 -22.37964 -21.56512 -20.07217 -19.17700 -18.89917 -17.89502 -17.77651 -17.09361 -16.83650 -16.71173 -16.28553 -15.97284 -15.67235 -15.30423 -15.21478 -15.11267 -14.69017 -14.39562 -14.30828 -14.06242 -13.97942 -13.69286 -13.46272 -13.16886 -12.84518 -12.70622 -12.49501 -12.44581 -12.23896 -12.14712 -12.06553 -12.02167 -11.73058 -11.56425 -11.14294 -10.96787 -10.56754 -10.19608 -9.96118 -9.75675 -8.65897 -7.83195 -5.29180 -0.50547 -0.13301 0.88663 1.50310 1.52555 1.56886 1.60300 1.85786 2.31061 2.53518 2.99144 3.27623 3.34306 3.46722 3.55706 3.81164 3.83571 3.92645 3.96191 4.12553 4.16661 4.22688 4.37471 4.54121 4.59130 4.65534 4.73284 4.83267 4.86269 4.90005 4.95516 5.05041 5.11558 5.14621 5.24584 5.40087 5.49770 5.59084 5.60108 5.70172 6.36077 6.61620 7.05507 7.13230 7.83523 8.36869 9.22983 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.018872 B = 0.003563 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.291367 B = 7856.820155 C = 8582.307156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.052 4.052 3 Si 0.964 3.036 4 H -0.287 1.287 5 H -0.305 1.305 6 H -0.264 1.264 7 C -0.248 4.248 8 H 0.082 0.918 9 N -0.597 5.597 10 C 0.189 3.811 11 C 0.111 3.889 12 H 0.078 0.922 13 C -0.106 4.106 14 C -0.104 4.104 15 C 0.109 3.891 16 H 0.128 0.872 17 C 0.130 3.870 18 N -0.599 5.599 19 C 0.566 3.434 20 O -0.569 6.569 21 C -0.139 4.139 22 C -0.051 4.051 23 C -0.135 4.135 24 C 0.135 3.865 25 F -0.125 7.125 26 C -0.146 4.146 27 C 0.022 3.978 28 Cl -0.047 7.047 29 H 0.247 0.753 30 H 0.062 0.938 31 H -0.022 1.022 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.012 0.988 37 H 0.087 0.913 38 H 0.156 0.844 39 H 0.181 0.819 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.297 -19.401 -1.530 20.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.247 4.247 3 Si 0.794 3.206 4 H -0.214 1.214 5 H -0.233 1.233 6 H -0.188 1.188 7 C -0.378 4.378 8 H 0.100 0.900 9 N -0.320 5.320 10 C 0.062 3.938 11 C 0.007 3.993 12 H 0.096 0.904 13 C -0.144 4.144 14 C -0.142 4.142 15 C 0.005 3.995 16 H 0.145 0.855 17 C 0.004 3.996 18 N -0.331 5.331 19 C 0.356 3.644 20 O -0.449 6.449 21 C -0.143 4.143 22 C -0.069 4.069 23 C -0.153 4.153 24 C 0.116 3.884 25 F -0.104 7.104 26 C -0.166 4.166 27 C -0.006 4.006 28 Cl -0.017 7.017 29 H 0.056 0.944 30 H 0.080 0.920 31 H -0.004 1.004 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.030 0.970 37 H 0.105 0.895 38 H 0.173 0.827 39 H 0.198 0.802 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.488 -19.313 -1.838 20.457 hybrid contribution -0.590 1.267 0.044 1.398 sum 5.899 -18.046 -1.794 19.071 Atomic orbital electron populations 1.70203 1.06891 1.25617 1.56218 1.25758 0.95802 1.01470 1.01638 0.85300 0.78146 0.79780 0.77411 1.21388 1.23260 1.18792 1.19565 0.92752 0.84992 1.40508 0.90010 1.44212 1.31053 1.02246 1.54508 1.20884 0.87391 0.95748 0.89784 1.22975 0.99054 0.82899 0.94421 0.90407 1.22245 0.92852 1.01156 0.98192 1.22342 0.97077 0.99068 0.95711 1.23328 0.80736 1.00052 0.95376 0.85477 1.21735 0.98936 0.85798 0.93146 1.49179 1.15948 1.15888 1.52084 1.18042 0.83966 0.82954 0.79471 1.90788 1.20518 1.82339 1.51250 1.19775 1.03685 0.91655 0.99159 1.21479 0.93081 1.00299 0.92076 1.21462 1.02090 0.89263 1.02529 1.17659 0.96666 0.82255 0.91866 1.91567 1.89381 1.47159 1.82259 1.21057 1.00889 0.98634 0.95982 1.20662 0.96080 0.93051 0.90802 1.98417 1.70125 1.98713 1.34469 0.94434 0.91982 1.00415 0.90838 0.91435 0.89554 0.89916 0.97014 0.89475 0.82683 0.80152 0.81124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.89 11.10 21.65 0.24 -54.65 16 2 C -0.05 -2.74 4.96 84.86 0.42 -2.32 16 3 Si 0.96 42.86 29.58 68.60 2.03 44.89 16 4 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.31 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.25 -12.32 9.64 84.03 0.81 -11.51 16 8 H 0.08 3.80 7.87 -2.91 -0.02 3.78 16 9 N -0.60 -27.04 2.28 -695.19 -1.59 -28.63 16 10 C 0.19 9.08 4.60 86.55 0.40 9.47 16 11 C 0.11 4.30 4.10 45.47 0.19 4.49 16 12 H 0.08 3.16 7.97 -2.38 -0.02 3.14 16 13 C -0.11 -3.40 6.18 31.55 0.19 -3.21 16 14 C -0.10 -2.76 6.20 31.64 0.20 -2.57 16 15 C 0.11 3.04 3.04 45.56 0.14 3.18 16 16 H 0.13 2.65 5.82 -2.38 -0.01 2.64 16 17 C 0.13 4.49 5.66 86.55 0.49 4.98 16 18 N -0.60 -20.68 2.74 -759.58 -2.08 -22.76 16 19 C 0.57 20.21 7.15 86.73 0.62 20.83 16 20 O -0.57 -24.57 15.77 -3.97 -0.06 -24.63 16 21 C -0.14 -3.78 5.50 -20.07 -0.11 -3.89 16 22 C -0.05 -1.05 7.76 22.51 0.17 -0.88 16 23 C -0.14 -2.06 10.01 22.28 0.22 -1.84 16 24 C 0.14 2.23 7.30 22.46 0.16 2.40 16 25 F -0.13 -2.01 17.26 44.97 0.78 -1.23 16 26 C -0.15 -2.67 9.79 22.30 0.22 -2.45 16 27 C 0.02 0.54 6.33 22.60 0.14 0.68 16 28 Cl -0.05 -1.27 26.90 -2.72 -0.07 -1.34 16 29 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 30 H 0.06 3.35 6.27 -2.39 -0.01 3.34 16 31 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 2.45 7.84 -2.38 -0.02 2.43 16 34 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.08 2.28 7.84 -2.39 -0.02 2.26 16 36 H 0.01 0.44 7.06 -2.38 -0.02 0.42 16 37 H 0.09 2.66 7.96 -2.39 -0.02 2.64 16 38 H 0.16 3.22 5.14 -2.91 -0.01 3.21 16 39 H 0.18 1.64 8.06 -2.92 -0.02 1.62 16 40 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -67.41 337.82 4.59 -62.82 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.09 Total: 8.18 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: 4.27 Total: 17.36 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -3.43 Total: -106.05 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.06 Total: -24.63 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.78 Total: -1.23 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.07 Total: -1.34 kcal Total: -67.41 4.59 -62.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018237390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.027 kcal (2) G-P(sol) polarization free energy of solvation -67.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds