Wall clock time and date at job start Tue Mar 31 2020 21:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00270 * 2 1 4 4 H 1.48503 * 109.47040 * 90.00271 * 3 2 1 5 5 H 1.48498 * 109.47058 * 330.00573 * 3 2 1 6 6 H 1.48500 * 109.47492 * 209.99866 * 3 2 1 7 7 C 1.38818 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99901 * 155.41741 * 7 2 1 9 9 N 1.36941 * 119.99795 * 335.41569 * 7 2 1 10 10 C 1.47419 * 125.65199 * 334.55491 * 9 7 2 11 11 C 1.54691 * 104.94255 * 204.07091 * 10 9 7 12 12 C 1.55154 * 101.67715 * 323.27616 * 11 10 9 13 13 C 1.47020 * 125.64398 * 154.85581 * 9 7 2 14 14 H 1.09002 * 109.88069 * 59.49121 * 13 9 7 15 15 C 1.52998 * 109.88884 * 298.32394 * 13 9 7 16 16 N 1.46503 * 109.46938 * 59.67993 * 15 13 9 17 17 C 1.34774 * 120.00086 * 185.93432 * 16 15 13 18 18 O 1.21778 * 119.99984 * 0.02562 * 17 16 15 19 19 C 1.41716 * 120.00138 * 180.02562 * 17 16 15 20 20 S 1.75665 * 125.09944 * 359.69987 * 19 17 16 21 21 C 1.75558 * 91.20844 * 179.90389 * 20 19 17 22 22 C 1.34205 * 110.68138 * 0.30927 * 21 20 19 23 23 C 1.37155 * 125.10225 * 179.97438 * 19 17 16 24 24 O 1.37644 * 124.48707 * 0.10778 * 23 19 17 25 25 C 1.43376 * 114.51106 * 163.34889 * 24 23 19 26 26 C 1.53222 * 109.14435 * 46.50646 * 25 24 23 27 27 O 1.38238 * 124.14351 * 179.97438 * 22 21 20 28 28 H 0.96996 * 120.00127 * 174.04842 * 1 2 3 29 29 H 1.09003 * 110.36155 * 322.99794 * 10 9 7 30 30 H 1.09003 * 110.36911 * 85.32083 * 10 9 7 31 31 H 1.08997 * 111.10339 * 205.10057 * 11 10 9 32 32 H 1.09002 * 110.81505 * 81.31619 * 11 10 9 33 33 H 1.08995 * 110.72188 * 276.97287 * 12 11 10 34 34 H 1.08998 * 110.71976 * 153.69613 * 12 11 10 35 35 H 1.08999 * 109.47631 * 179.67845 * 15 13 9 36 36 H 1.09001 * 109.46908 * 299.68867 * 15 13 9 37 37 H 0.97001 * 120.00032 * 5.93364 * 16 15 13 38 38 H 1.07999 * 124.65696 * 180.02562 * 21 20 19 39 39 H 1.09005 * 109.52627 * 166.40055 * 25 24 23 40 40 H 1.08996 * 109.53309 * 286.53394 * 25 24 23 41 41 H 1.09001 * 109.52381 * 57.65206 * 26 25 24 42 42 H 1.08994 * 109.52553 * 177.84924 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 1.4001 5 1 1.4477 2.6526 -0.6999 6 1 3.5478 1.4401 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0168 -1.2445 -0.3896 9 7 1.4185 -2.3346 0.4924 10 6 0.3385 -2.3729 1.4949 11 6 0.4526 -3.7691 2.1510 12 6 0.8565 -4.6526 0.9412 13 6 1.7596 -3.7137 0.1138 14 1 2.8071 -3.9121 0.3408 15 6 1.4989 -3.9233 -1.3791 16 7 2.3165 -2.9865 -2.1538 17 6 2.1646 -2.9054 -3.4905 18 8 1.3474 -3.6105 -4.0543 19 6 2.9560 -1.9996 -4.2400 20 16 4.1651 -0.9181 -3.5662 21 6 4.5415 -0.2857 -5.1600 22 6 3.7796 -0.8737 -6.0953 23 6 2.8889 -1.8321 -5.5996 24 8 2.0360 -2.5242 -6.4291 25 6 1.8658 -1.9411 -7.7278 26 6 3.2393 -1.5666 -8.2944 27 8 3.8461 -0.5836 -7.4453 28 1 -0.4850 -0.8355 -0.0871 29 1 0.4842 -1.5903 2.2395 30 1 -0.6321 -2.2617 1.0114 31 1 -0.5040 -4.0875 2.5653 32 1 1.2293 -3.7754 2.9158 33 1 -0.0226 -4.9462 0.3676 34 1 1.4126 -5.5295 1.2726 35 1 1.7592 -4.9455 -1.6535 36 1 0.4445 -3.7471 -1.5920 37 1 2.9673 -2.4245 -1.7047 38 1 5.2810 0.4756 -5.3598 39 1 1.3825 -2.6601 -8.3895 40 1 1.2475 -1.0471 -7.6477 41 1 3.8712 -2.4539 -8.3341 42 1 3.1203 -1.1577 -9.2976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028241984.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:36 Heat of formation + Delta-G solvation = -42.541602 kcal Electronic energy + Delta-G solvation = -27902.352512 eV Core-core repulsion = 23975.943671 eV Total energy + Delta-G solvation = -3926.408840 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.00921 -39.17249 -37.77422 -36.95574 -35.54318 -33.81868 -32.85937 -30.30702 -29.86807 -29.16202 -28.63287 -25.48191 -24.48028 -23.79069 -23.11051 -20.84102 -20.23446 -19.76448 -19.22794 -18.78668 -17.58752 -17.13332 -16.59171 -16.34398 -15.56262 -15.31835 -15.09565 -14.81905 -14.48702 -14.24972 -14.22547 -14.12745 -13.74455 -13.25210 -13.19058 -13.01034 -12.80435 -12.46770 -12.07022 -11.76656 -11.27754 -11.24976 -11.06258 -10.95917 -10.78639 -10.72237 -10.58966 -10.47333 -10.26263 -10.12159 -10.00350 -9.55806 -9.38332 -8.59361 -8.47416 -8.18598 -7.90296 -6.95212 -6.10427 -3.27715 0.54422 1.45986 1.70466 2.24755 3.22206 3.42540 3.45122 3.47371 3.63360 3.69423 3.86704 4.12753 4.51922 4.53019 4.70327 4.75748 5.13717 5.20254 5.29690 5.31467 5.35151 5.36539 5.45010 5.48826 5.60581 5.71169 5.94756 6.00477 6.06546 6.18485 6.21560 6.38108 6.45220 6.49981 6.60254 6.92337 6.95251 7.07377 7.07770 7.15793 7.71424 8.20490 8.42386 8.82974 8.97861 9.74348 10.34968 11.18431 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013573 B = 0.004355 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.384288 B = 6427.843061 C = 7700.112545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.015 4.015 3 Si 1.055 2.945 4 H -0.292 1.292 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.335 4.335 8 H 0.056 0.944 9 N -0.593 5.593 10 C 0.142 3.858 11 C -0.136 4.136 12 C -0.122 4.122 13 C 0.142 3.858 14 H 0.040 0.960 15 C 0.119 3.881 16 N -0.696 5.696 17 C 0.583 3.417 18 O -0.539 6.539 19 C -0.261 4.261 20 S 0.235 5.765 21 C -0.223 4.223 22 C 0.032 3.968 23 C 0.113 3.887 24 O -0.260 6.260 25 C 0.012 3.988 26 C 0.019 3.981 27 O -0.293 6.293 28 H 0.272 0.728 29 H 0.047 0.953 30 H 0.027 0.973 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.405 0.595 38 H 0.180 0.820 39 H 0.123 0.877 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.245 -4.196 -10.315 13.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.219 4.219 3 Si 0.885 3.115 4 H -0.219 1.219 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.463 4.463 8 H 0.074 0.926 9 N -0.318 5.318 10 C 0.017 3.983 11 C -0.174 4.174 12 C -0.160 4.160 13 C 0.035 3.965 14 H 0.058 0.942 15 C -0.007 4.007 16 N -0.349 5.349 17 C 0.369 3.631 18 O -0.420 6.420 19 C -0.382 4.382 20 S 0.500 5.500 21 C -0.360 4.360 22 C -0.025 4.025 23 C 0.052 3.948 24 O -0.173 6.173 25 C -0.065 4.065 26 C -0.057 4.057 27 O -0.209 6.209 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.244 0.756 38 H 0.197 0.803 39 H 0.141 0.859 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.061 -2.674 -9.221 12.536 hybrid contribution -0.188 -1.506 -1.629 2.227 sum 7.873 -4.181 -10.851 14.043 Atomic orbital electron populations 1.70710 1.06656 1.30657 1.46567 1.25733 0.96499 1.01063 0.98600 0.83663 0.74898 0.76229 0.76749 1.21906 1.21451 1.21125 1.19433 0.96283 0.87178 1.43374 0.92600 1.44582 1.42954 0.99927 1.44375 1.21509 0.92193 0.93570 0.91053 1.22752 1.00274 0.97452 0.96955 1.22488 0.99364 0.97198 0.96977 1.21338 0.97051 0.87512 0.90634 0.94208 1.21917 0.95518 0.90645 0.92595 1.45968 1.41238 1.41950 1.05771 1.15547 0.82795 0.82331 0.82402 1.90812 1.36129 1.44449 1.70600 1.22722 1.10581 1.10196 0.94656 1.84555 1.31482 1.30793 1.03211 1.25005 1.06335 1.08802 0.95883 1.18178 0.98688 1.00336 0.85286 1.18800 0.91977 0.94378 0.89623 1.87184 1.60630 1.46286 1.23239 1.23685 0.97190 1.01239 0.84340 1.23590 0.94150 0.93328 0.94651 1.87030 1.76713 1.45080 1.12090 0.91633 0.93421 0.95507 0.91964 0.91902 0.91506 0.91750 0.93238 0.91900 0.75590 0.80304 0.85924 0.90392 0.90590 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.67 13.06 55.49 0.72 -25.94 16 2 C -0.01 -0.40 5.19 -17.43 -0.09 -0.49 16 3 Si 1.06 24.30 29.98 -169.99 -5.10 19.21 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.33 -8.56 8.17 -15.06 -0.12 -8.68 16 8 H 0.06 1.39 6.46 -52.49 -0.34 1.05 16 9 N -0.59 -13.96 2.93 -162.71 -0.48 -14.44 16 10 C 0.14 3.17 5.51 -2.65 -0.01 3.16 16 11 C -0.14 -2.34 7.07 -24.70 -0.17 -2.52 16 12 C -0.12 -2.01 6.48 -24.90 -0.16 -2.17 16 13 C 0.14 2.81 3.37 -66.95 -0.23 2.58 16 14 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 15 C 0.12 2.43 5.21 -4.04 -0.02 2.41 16 16 N -0.70 -14.71 4.80 -63.19 -0.30 -15.01 16 17 C 0.58 12.77 7.59 -14.93 -0.11 12.66 16 18 O -0.54 -13.22 15.85 -11.90 -0.19 -13.41 16 19 C -0.26 -5.01 6.25 -38.65 -0.24 -5.25 16 20 S 0.24 3.73 22.17 -107.50 -2.38 1.35 16 21 C -0.22 -3.07 11.17 29.31 0.33 -2.74 16 22 C 0.03 0.48 6.55 -40.38 -0.26 0.22 16 23 C 0.11 2.02 6.58 -39.35 -0.26 1.76 16 24 O -0.26 -4.53 9.60 -49.11 -0.47 -5.00 16 25 C 0.01 0.14 7.14 37.27 0.27 0.40 16 26 C 0.02 0.19 7.14 37.27 0.27 0.45 16 27 O -0.29 -3.88 10.77 -35.39 -0.38 -4.26 16 28 H 0.27 8.14 6.10 -40.82 -0.25 7.89 16 29 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.03 0.66 6.70 -51.93 -0.35 0.31 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.08 7.84 -51.93 -0.41 0.68 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.44 8.10 -51.93 -0.42 1.02 16 37 H 0.40 8.40 4.68 -40.82 -0.19 8.21 16 38 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 39 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 353.22 15.07 5.32 5.32 Total: -1.00 -33.67 353.22 -9.48 -43.15 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.40 Total: 7.25 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -0.83 Total: 1.79 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.06 Total: -55.39 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -1.04 Total: -22.67 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.10 Total: 19.21 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -2.38 Total: 1.35 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.67 -9.48 -43.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028241984.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.610 kcal (2) G-P(sol) polarization free energy of solvation -33.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds