Wall clock time and date at job start Tue Mar 31 2020 21:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00270 * 2 1 4 4 H 1.48503 * 109.47040 * 90.00271 * 3 2 1 5 5 H 1.48498 * 109.47058 * 330.00573 * 3 2 1 6 6 H 1.48500 * 109.47492 * 209.99866 * 3 2 1 7 7 C 1.38818 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99901 * 155.41741 * 7 2 1 9 9 N 1.36941 * 119.99795 * 335.41569 * 7 2 1 10 10 C 1.47419 * 125.65199 * 334.55491 * 9 7 2 11 11 C 1.54691 * 104.94255 * 204.07091 * 10 9 7 12 12 C 1.55154 * 101.67715 * 323.27616 * 11 10 9 13 13 C 1.47020 * 125.64398 * 154.85581 * 9 7 2 14 14 H 1.09002 * 109.88069 * 59.49121 * 13 9 7 15 15 C 1.52998 * 109.88884 * 298.32394 * 13 9 7 16 16 N 1.46503 * 109.46938 * 59.67993 * 15 13 9 17 17 C 1.34774 * 120.00086 * 185.93432 * 16 15 13 18 18 O 1.21778 * 119.99984 * 0.02562 * 17 16 15 19 19 C 1.41716 * 120.00138 * 180.02562 * 17 16 15 20 20 S 1.75665 * 125.09944 * 359.69987 * 19 17 16 21 21 C 1.75558 * 91.20844 * 179.90389 * 20 19 17 22 22 C 1.34205 * 110.68138 * 0.30927 * 21 20 19 23 23 C 1.37155 * 125.10225 * 179.97438 * 19 17 16 24 24 O 1.37644 * 124.48707 * 0.10778 * 23 19 17 25 25 C 1.43376 * 114.51106 * 163.34889 * 24 23 19 26 26 C 1.53222 * 109.14435 * 46.50646 * 25 24 23 27 27 O 1.38238 * 124.14351 * 179.97438 * 22 21 20 28 28 H 0.96996 * 120.00127 * 174.04842 * 1 2 3 29 29 H 1.09003 * 110.36155 * 322.99794 * 10 9 7 30 30 H 1.09003 * 110.36911 * 85.32083 * 10 9 7 31 31 H 1.08997 * 111.10339 * 205.10057 * 11 10 9 32 32 H 1.09002 * 110.81505 * 81.31619 * 11 10 9 33 33 H 1.08995 * 110.72188 * 276.97287 * 12 11 10 34 34 H 1.08998 * 110.71976 * 153.69613 * 12 11 10 35 35 H 1.08999 * 109.47631 * 179.67845 * 15 13 9 36 36 H 1.09001 * 109.46908 * 299.68867 * 15 13 9 37 37 H 0.97001 * 120.00032 * 5.93364 * 16 15 13 38 38 H 1.07999 * 124.65696 * 180.02562 * 21 20 19 39 39 H 1.09005 * 109.52627 * 166.40055 * 25 24 23 40 40 H 1.08996 * 109.53309 * 286.53394 * 25 24 23 41 41 H 1.09001 * 109.52381 * 57.65206 * 26 25 24 42 42 H 1.08994 * 109.52553 * 177.84924 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 1.4001 5 1 1.4477 2.6526 -0.6999 6 1 3.5478 1.4401 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0168 -1.2445 -0.3896 9 7 1.4185 -2.3346 0.4924 10 6 0.3385 -2.3729 1.4949 11 6 0.4526 -3.7691 2.1510 12 6 0.8565 -4.6526 0.9412 13 6 1.7596 -3.7137 0.1138 14 1 2.8071 -3.9121 0.3408 15 6 1.4989 -3.9233 -1.3791 16 7 2.3165 -2.9865 -2.1538 17 6 2.1646 -2.9054 -3.4905 18 8 1.3474 -3.6105 -4.0543 19 6 2.9560 -1.9996 -4.2400 20 16 4.1651 -0.9181 -3.5662 21 6 4.5415 -0.2857 -5.1600 22 6 3.7796 -0.8737 -6.0953 23 6 2.8889 -1.8321 -5.5996 24 8 2.0360 -2.5242 -6.4291 25 6 1.8658 -1.9411 -7.7278 26 6 3.2393 -1.5666 -8.2944 27 8 3.8461 -0.5836 -7.4453 28 1 -0.4850 -0.8355 -0.0871 29 1 0.4842 -1.5903 2.2395 30 1 -0.6321 -2.2617 1.0114 31 1 -0.5040 -4.0875 2.5653 32 1 1.2293 -3.7754 2.9158 33 1 -0.0226 -4.9462 0.3676 34 1 1.4126 -5.5295 1.2726 35 1 1.7592 -4.9455 -1.6535 36 1 0.4445 -3.7471 -1.5920 37 1 2.9673 -2.4245 -1.7047 38 1 5.2810 0.4756 -5.3598 39 1 1.3825 -2.6601 -8.3895 40 1 1.2475 -1.0471 -7.6477 41 1 3.8712 -2.4539 -8.3341 42 1 3.1203 -1.1577 -9.2976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028241984.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:35 Heat of formation + Delta-G solvation = -65.671630 kcal Electronic energy + Delta-G solvation = -27903.355505 eV Core-core repulsion = 23975.943671 eV Total energy + Delta-G solvation = -3927.411834 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.14824 -40.78806 -39.41667 -38.09695 -36.71932 -35.53645 -34.75041 -31.75682 -30.93899 -30.80966 -30.13447 -27.03926 -26.14768 -24.87344 -24.58677 -22.39849 -21.66771 -21.49637 -20.37168 -20.26659 -19.24071 -18.37829 -17.98763 -17.53633 -17.16035 -16.75159 -16.39570 -16.05202 -15.86250 -15.78801 -15.59520 -15.47510 -15.41060 -14.97150 -14.66350 -14.32707 -14.14500 -13.69152 -13.63744 -13.42960 -12.91276 -12.53912 -12.40648 -12.33002 -12.14446 -12.08395 -12.04160 -11.88376 -11.83234 -11.79977 -11.51987 -11.47330 -11.09021 -10.49418 -10.10505 -9.63636 -9.10622 -8.93553 -8.19001 -5.33690 -0.75037 0.23179 0.50840 1.03104 1.58508 1.65589 1.80801 2.04789 2.17154 2.30786 2.46429 2.67220 3.06840 3.31571 3.50790 3.53530 3.84251 3.89923 3.94641 3.98357 4.05971 4.17109 4.22947 4.36956 4.38778 4.41093 4.48883 4.56847 4.60821 4.75988 4.80817 4.86928 4.96874 5.10491 5.14663 5.33383 5.45581 5.49187 5.57772 5.74202 5.95973 6.37873 6.53754 6.95561 7.17321 7.75325 8.38435 9.08174 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013573 B = 0.004355 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.384288 B = 6427.843061 C = 7700.112545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.072 4.072 3 Si 1.090 2.910 4 H -0.287 1.287 5 H -0.303 1.303 6 H -0.246 1.246 7 C -0.319 4.319 8 H 0.066 0.934 9 N -0.611 5.611 10 C 0.142 3.858 11 C -0.119 4.119 12 C -0.113 4.113 13 C 0.139 3.861 14 H 0.055 0.945 15 C 0.123 3.877 16 N -0.699 5.699 17 C 0.579 3.421 18 O -0.580 6.580 19 C -0.316 4.316 20 S 0.242 5.758 21 C -0.191 4.191 22 C 0.019 3.981 23 C 0.120 3.880 24 O -0.294 6.294 25 C 0.000 4.000 26 C 0.019 3.981 27 O -0.296 6.296 28 H 0.252 0.748 29 H 0.019 0.981 30 H -0.004 1.004 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.071 0.929 36 H 0.027 0.973 37 H 0.406 0.594 38 H 0.219 0.781 39 H 0.154 0.846 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.837 -4.438 -11.313 16.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.269 4.269 3 Si 0.915 3.085 4 H -0.214 1.214 5 H -0.231 1.231 6 H -0.170 1.170 7 C -0.448 4.448 8 H 0.084 0.916 9 N -0.337 5.337 10 C 0.016 3.984 11 C -0.158 4.158 12 C -0.151 4.151 13 C 0.032 3.968 14 H 0.073 0.927 15 C -0.003 4.003 16 N -0.351 5.351 17 C 0.368 3.632 18 O -0.464 6.464 19 C -0.436 4.436 20 S 0.505 5.495 21 C -0.329 4.329 22 C -0.037 4.037 23 C 0.057 3.943 24 O -0.208 6.208 25 C -0.075 4.075 26 C -0.056 4.056 27 O -0.212 6.212 28 H 0.063 0.937 29 H 0.038 0.962 30 H 0.014 0.986 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.245 0.755 38 H 0.236 0.764 39 H 0.172 0.828 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 10.694 -2.950 -10.217 15.081 hybrid contribution -0.985 -1.483 -1.480 2.315 sum 9.709 -4.433 -11.698 15.835 Atomic orbital electron populations 1.70846 1.07958 1.29402 1.50817 1.26948 0.96439 1.04413 0.99113 0.83235 0.75434 0.72647 0.77202 1.21366 1.23053 1.16993 1.19746 0.96362 0.87787 1.40876 0.91643 1.44901 1.42750 1.01124 1.44916 1.21430 0.90479 0.96157 0.90300 1.22665 1.02207 0.93694 0.97191 1.22519 0.99201 0.97539 0.95817 1.21561 0.98501 0.86304 0.90443 0.92736 1.21879 0.93515 0.91676 0.93231 1.45988 1.41186 1.42085 1.05832 1.15952 0.82496 0.82252 0.82534 1.90760 1.38029 1.46352 1.71256 1.22599 1.13142 1.12327 0.95548 1.84349 1.30333 1.30242 1.04545 1.25446 1.05431 1.07766 0.94214 1.18183 0.98686 1.00165 0.86704 1.19176 0.91699 0.93970 0.89463 1.87132 1.60628 1.47467 1.25569 1.24124 0.98858 1.02061 0.82476 1.23913 0.92632 0.93515 0.95582 1.87030 1.77036 1.46132 1.11003 0.93712 0.96222 0.98617 0.89513 0.90411 0.91461 0.87743 0.91137 0.95399 0.75483 0.76437 0.82844 0.90560 0.89861 0.81713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.47 13.06 21.65 0.28 -58.18 16 2 C -0.07 -4.00 5.19 84.86 0.44 -3.56 16 3 Si 1.09 49.15 29.98 68.60 2.06 51.20 16 4 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 7 C -0.32 -16.49 8.17 84.03 0.69 -15.81 16 8 H 0.07 3.22 6.46 -2.91 -0.02 3.20 16 9 N -0.61 -29.18 2.93 -668.69 -1.96 -31.14 16 10 C 0.14 6.51 5.51 86.78 0.48 6.98 16 11 C -0.12 -3.91 7.07 31.91 0.23 -3.68 16 12 C -0.11 -3.46 6.48 31.78 0.21 -3.26 16 13 C 0.14 5.36 3.37 45.34 0.15 5.51 16 14 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 15 C 0.12 5.10 5.21 86.38 0.45 5.55 16 16 N -0.70 -30.20 4.80 -472.02 -2.26 -32.46 16 17 C 0.58 26.32 7.59 85.10 0.65 26.96 16 18 O -0.58 -29.83 15.85 11.67 0.18 -29.64 16 19 C -0.32 -12.33 6.25 22.87 0.14 -12.19 16 20 S 0.24 7.36 22.17 -56.49 -1.25 6.10 16 21 C -0.19 -4.73 11.17 66.90 0.75 -3.99 16 22 C 0.02 0.53 6.55 21.75 0.14 0.68 16 23 C 0.12 4.24 6.58 22.42 0.15 4.39 16 24 O -0.29 -10.32 9.60 -90.40 -0.87 -11.18 16 25 C 0.00 0.00 7.14 72.06 0.51 0.51 16 26 C 0.02 0.31 7.14 72.06 0.51 0.82 16 27 O -0.30 -6.97 10.77 -112.93 -1.22 -8.19 16 28 H 0.25 16.13 6.10 -92.71 -0.57 15.56 16 29 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.00 -0.21 6.70 -2.39 -0.02 -0.22 16 31 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.07 2.08 7.84 -2.39 -0.02 2.06 16 34 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.03 1.34 8.10 -2.39 -0.02 1.32 16 37 H 0.41 17.00 4.68 -92.71 -0.43 16.56 16 38 H 0.22 3.59 8.06 -2.91 -0.02 3.56 16 39 H 0.15 2.20 8.14 -2.38 -0.02 2.18 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.17 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -78.98 353.22 1.29 -77.69 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.83 Total: 26.87 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 5.49 Total: 8.93 kcal Atomic # 7 Polarization: -117.84 SS G_CDS: -3.94 Total: -121.78 kcal Atomic # 8 Polarization: -47.11 SS G_CDS: -1.90 Total: -49.01 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 2.06 Total: 51.20 kcal Atomic # 16 Polarization: 7.36 SS G_CDS: -1.25 Total: 6.10 kcal Total: -78.98 1.29 -77.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028241984.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.018 kcal (2) G-P(sol) polarization free energy of solvation -78.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds