Wall clock time and date at job start Tue Mar 31 2020 21:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86803 * 119.99730 * 2 1 4 4 H 1.48496 * 109.46893 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46824 * 300.00390 * 3 2 1 6 6 H 1.48492 * 109.47038 * 60.00129 * 3 2 1 7 7 C 1.38810 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99710 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99996 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.64797 * 14.66833 * 9 7 2 11 11 C 1.54910 * 104.93045 * 155.83208 * 10 9 7 12 12 C 1.55452 * 101.44824 * 37.00597 * 11 10 9 13 13 C 1.47017 * 125.64982 * 194.68814 * 9 7 2 14 14 H 1.09000 * 109.88278 * 300.46226 * 13 9 7 15 15 C 1.53005 * 109.88305 * 61.62433 * 13 9 7 16 16 N 1.46497 * 109.47269 * 183.74839 * 15 13 9 17 17 C 1.34782 * 119.99933 * 185.65805 * 16 15 13 18 18 O 1.21777 * 119.99678 * 359.97438 * 17 16 15 19 19 C 1.41710 * 119.99882 * 179.97438 * 17 16 15 20 20 S 1.75665 * 125.10378 * 0.02562 * 19 17 16 21 21 C 1.75554 * 91.21297 * 179.97438 * 20 19 17 22 22 C 1.34201 * 110.67990 * 359.97438 * 21 20 19 23 23 C 1.37155 * 125.10285 * 179.71916 * 19 17 16 24 24 O 1.37647 * 124.47923 * 0.27753 * 23 19 17 25 25 C 1.43374 * 114.50185 * 163.25884 * 24 23 19 26 26 C 1.53229 * 109.12961 * 46.53364 * 25 24 23 27 27 O 1.38249 * 124.14600 * 180.21358 * 22 21 20 28 28 H 0.96991 * 119.99722 * 359.97438 * 1 2 3 29 29 H 1.08998 * 110.36693 * 274.72774 * 10 9 7 30 30 H 1.09007 * 110.36673 * 36.94405 * 10 9 7 31 31 H 1.08996 * 111.00766 * 155.13628 * 11 10 9 32 32 H 1.08997 * 111.00611 * 278.99616 * 11 10 9 33 33 H 1.09000 * 110.70699 * 206.14250 * 12 11 10 34 34 H 1.08997 * 110.70579 * 82.88810 * 12 11 10 35 35 H 1.09002 * 109.46926 * 303.74853 * 15 13 9 36 36 H 1.08996 * 109.46890 * 63.74717 * 15 13 9 37 37 H 0.97008 * 119.99976 * 5.65510 * 16 15 13 38 38 H 1.08005 * 124.66270 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.52826 * 166.42835 * 25 24 23 40 40 H 1.09002 * 109.52810 * 286.56725 * 25 24 23 41 41 H 1.08995 * 109.52321 * 57.63043 * 26 25 24 42 42 H 1.09005 * 109.51981 * 177.82115 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1077 -2.5526 -0.3034 11 6 -0.2495 -4.0207 -0.7771 12 6 0.7645 -4.7443 0.1528 13 6 1.8982 -3.7079 0.3019 14 1 2.7012 -3.9334 -0.4000 15 6 2.4351 -3.7265 1.7345 16 7 3.0828 -5.0141 1.9967 17 6 3.5312 -5.3032 3.2344 18 8 3.3984 -4.4938 4.1346 19 6 4.1572 -6.5489 3.4882 20 16 4.4184 -7.8101 2.2936 21 6 5.1889 -8.8367 3.4913 22 6 5.2224 -8.2275 4.6866 23 6 4.6554 -6.9485 4.7020 24 8 4.6107 -6.1908 5.8503 25 6 4.8369 -6.9286 7.0586 26 6 6.0547 -7.8393 6.8704 27 8 5.7715 -8.7847 5.8265 28 1 -0.4849 0.8400 0.0004 29 1 -0.7064 -2.3832 0.5916 30 1 -0.4091 -1.8676 -1.0959 31 1 -1.2628 -4.3877 -0.6141 32 1 0.0379 -4.1231 -1.8235 33 1 1.1345 -5.6561 -0.3159 34 1 0.3122 -4.9629 1.1201 35 1 3.1602 -2.9225 1.8612 36 1 1.6106 -3.5855 2.4333 37 1 3.1888 -5.6586 1.2795 38 1 5.5820 -9.8230 3.2934 39 1 5.0235 -6.2357 7.8791 40 1 3.9594 -7.5341 7.2856 41 1 6.9221 -7.2367 6.6010 42 1 6.2560 -8.3749 7.7982 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028241985.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:39 Heat of formation + Delta-G solvation = -64.986084 kcal Electronic energy + Delta-G solvation = -26904.463842 eV Core-core repulsion = 22977.081736 eV Total energy + Delta-G solvation = -3927.382106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.13273 -40.80869 -39.27580 -38.07468 -36.71558 -35.78402 -34.41573 -31.80335 -31.19185 -30.79946 -29.90453 -26.91785 -26.31128 -24.93683 -24.63576 -22.31103 -21.89174 -21.29264 -20.34568 -20.17498 -18.78681 -18.37763 -18.00802 -17.56846 -17.06228 -16.69866 -16.44925 -16.34115 -15.83563 -15.81183 -15.70609 -15.41037 -15.26906 -14.71344 -14.60885 -14.12512 -13.98880 -13.69476 -13.66993 -13.38497 -13.01363 -12.86247 -12.69693 -12.43377 -12.11594 -12.04487 -11.98754 -11.88201 -11.80766 -11.73738 -11.49408 -11.40868 -11.18274 -10.69360 -10.22658 -9.65864 -9.03957 -8.86753 -7.89295 -5.26933 -0.74751 0.25726 0.49777 1.04766 1.43039 1.45467 1.54796 2.04456 2.07925 2.22885 2.46081 2.49889 3.06879 3.30456 3.52292 3.72690 3.89409 3.90411 3.97289 3.97565 4.05270 4.22301 4.28339 4.39912 4.43900 4.51263 4.55082 4.58888 4.71912 4.85459 4.95963 4.99341 5.13507 5.19130 5.30860 5.46638 5.54667 5.59832 5.66567 5.78264 5.96906 6.22399 6.45781 7.08449 7.14281 7.75261 8.41215 9.21817 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.017412 B = 0.002801 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.709734 B = 9994.307824 C =10968.660872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.060 4.060 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.296 1.296 7 C -0.239 4.239 8 H 0.077 0.923 9 N -0.610 5.610 10 C 0.173 3.827 11 C -0.132 4.132 12 C -0.115 4.115 13 C 0.148 3.852 14 H 0.055 0.945 15 C 0.132 3.868 16 N -0.706 5.706 17 C 0.582 3.418 18 O -0.575 6.575 19 C -0.324 4.324 20 S 0.279 5.721 21 C -0.188 4.188 22 C 0.012 3.988 23 C 0.119 3.881 24 O -0.298 6.298 25 C 0.001 3.999 26 C 0.019 3.981 27 O -0.298 6.298 28 H 0.248 0.752 29 H -0.010 1.010 30 H 0.037 0.963 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.035 0.965 36 H 0.037 0.963 37 H 0.409 0.591 38 H 0.218 0.782 39 H 0.147 0.853 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.595 -25.346 7.875 28.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.254 4.254 3 Si 0.800 3.200 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.223 1.223 7 C -0.368 4.368 8 H 0.094 0.906 9 N -0.334 5.334 10 C 0.048 3.952 11 C -0.170 4.170 12 C -0.153 4.153 13 C 0.040 3.960 14 H 0.073 0.927 15 C 0.005 3.995 16 N -0.359 5.359 17 C 0.372 3.628 18 O -0.457 6.457 19 C -0.443 4.443 20 S 0.542 5.458 21 C -0.325 4.325 22 C -0.044 4.044 23 C 0.057 3.943 24 O -0.212 6.212 25 C -0.074 4.074 26 C -0.057 4.057 27 O -0.214 6.214 28 H 0.057 0.943 29 H 0.008 0.992 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.125 0.875 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.246 0.754 38 H 0.235 0.765 39 H 0.165 0.835 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 11.121 -24.665 6.984 27.943 hybrid contribution 0.466 1.712 1.830 2.549 sum 11.587 -22.953 8.814 27.181 Atomic orbital electron populations 1.70150 1.06271 1.25322 1.57568 1.25696 0.96541 1.01011 1.02144 0.85111 0.78318 0.79818 0.76728 1.19168 1.21365 1.22292 1.19340 0.90759 0.83584 1.43138 0.90555 1.44758 1.06884 1.02085 1.79713 1.21280 0.83995 0.93631 0.96314 1.22917 0.99565 0.95127 0.99387 1.22672 0.95210 0.97470 0.99903 1.21354 0.96219 0.86925 0.91454 0.92745 1.21729 0.95338 0.83536 0.98864 1.45696 1.60270 1.19534 1.10376 1.16020 0.78303 0.85682 0.82834 1.90857 1.58709 1.50736 1.45424 1.22561 1.18680 1.03563 0.99545 1.83742 1.54716 1.01112 1.06188 1.25492 1.06973 1.06929 0.93104 1.18265 1.03561 0.92303 0.90291 1.19317 0.95902 0.91204 0.87893 1.87162 1.86698 1.34023 1.13294 1.24095 0.99470 0.97871 0.85922 1.23917 0.96698 0.92727 0.92313 1.87101 1.78725 1.33267 1.22315 0.94308 0.99178 0.94415 0.89842 0.90811 0.87482 0.91906 0.94692 0.94418 0.75435 0.76550 0.83538 0.89884 0.90232 0.81975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.86 10.57 21.65 0.23 -57.63 16 2 C -0.06 -3.50 5.47 84.86 0.46 -3.04 16 3 Si 0.97 47.23 29.55 68.60 2.03 49.26 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 7 C -0.24 -13.57 9.73 84.03 0.82 -12.75 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.61 -31.20 3.13 -668.25 -2.09 -33.29 16 10 C 0.17 8.52 5.40 86.86 0.47 8.99 16 11 C -0.13 -4.57 7.11 32.09 0.23 -4.34 16 12 C -0.11 -3.57 6.18 31.89 0.20 -3.38 16 13 C 0.15 5.83 3.20 45.34 0.15 5.97 16 14 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 15 C 0.13 5.44 5.09 86.38 0.44 5.88 16 16 N -0.71 -22.99 5.33 -472.02 -2.52 -25.51 16 17 C 0.58 21.22 7.59 85.10 0.65 21.87 16 18 O -0.58 -26.89 15.85 11.68 0.19 -26.71 16 19 C -0.32 -9.11 6.25 22.87 0.14 -8.97 16 20 S 0.28 4.48 22.17 -56.49 -1.25 3.23 16 21 C -0.19 -2.73 11.17 66.90 0.75 -1.98 16 22 C 0.01 0.24 6.54 21.75 0.14 0.38 16 23 C 0.12 3.28 6.57 22.42 0.15 3.42 16 24 O -0.30 -8.85 9.60 -90.44 -0.87 -9.71 16 25 C 0.00 0.02 7.13 72.06 0.51 0.54 16 26 C 0.02 0.23 7.15 72.06 0.52 0.75 16 27 O -0.30 -5.27 10.78 -113.08 -1.22 -6.49 16 28 H 0.25 14.73 8.31 -92.72 -0.77 13.96 16 29 H -0.01 -0.55 8.06 -2.39 -0.02 -0.56 16 30 H 0.04 2.09 6.93 -2.38 -0.02 2.07 16 31 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.06 2.00 7.79 -2.39 -0.02 1.98 16 35 H 0.03 1.66 7.88 -2.39 -0.02 1.64 16 36 H 0.04 1.77 8.04 -2.39 -0.02 1.76 16 37 H 0.41 10.01 7.32 -92.70 -0.68 9.33 16 38 H 0.22 1.53 8.06 -2.91 -0.02 1.50 16 39 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.16 0.68 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -82.81 358.25 0.49 -82.32 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 0.38 Total: 11.18 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 5.62 Total: 13.35 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -4.38 Total: -116.43 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -1.90 Total: -42.91 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.25 Total: 3.23 kcal Total: -82.81 0.49 -82.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028241985.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.335 kcal (2) G-P(sol) polarization free energy of solvation -82.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds