Wall clock time and date at job start Tue Mar 31 2020 20:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38160 * 120.08140 * 2 1 4 4 F 1.35103 * 119.93726 * 359.97438 * 3 2 1 5 5 C 1.38579 * 120.12935 * 179.97438 * 3 2 1 6 6 C 1.38282 * 120.29295 * 0.04566 * 5 3 2 7 7 C 1.38112 * 120.15906 * 359.69560 * 6 5 3 8 8 Cl 1.73596 * 120.06692 * 180.27552 * 7 6 5 9 9 C 1.39567 * 120.07834 * 179.97438 * 2 1 3 10 10 C 1.47777 * 120.14554 * 359.97438 * 9 2 1 11 11 O 1.21559 * 120.00058 * 89.99912 * 10 9 2 12 12 N 1.34782 * 119.99709 * 270.00315 * 10 9 2 13 13 C 1.47866 * 126.94642 * 359.97154 * 12 10 9 14 14 C 1.56019 * 105.10578 * 182.02254 * 13 12 10 15 15 H 1.08997 * 116.24737 * 158.83722 * 14 13 12 16 16 C 1.57090 * 99.60308 * 32.80809 * 14 13 12 17 17 C 1.49284 * 126.94314 * 180.02562 * 12 10 9 18 18 H 1.09009 * 116.78931 * 16.28492 * 17 12 10 19 19 C 1.56017 * 104.09379 * 246.67827 * 17 12 10 20 20 N 1.47874 * 105.10084 * 288.76785 * 19 17 12 21 21 C 1.36942 * 126.94406 * 182.00638 * 20 19 17 22 22 H 1.08001 * 119.99797 * 173.68102 * 21 20 19 23 23 C 1.38811 * 119.99739 * 353.67327 * 21 20 19 24 24 N 1.31617 * 120.00037 * 6.44364 * 23 21 20 25 25 Si 1.86803 * 119.99877 * 186.44068 * 23 21 20 26 26 H 1.48497 * 109.47381 * 94.98644 * 25 23 21 27 27 H 1.48501 * 109.46972 * 214.98821 * 25 23 21 28 28 H 1.48502 * 109.46751 * 334.98444 * 25 23 21 29 29 H 1.09000 * 109.47127 * 270.02160 * 1 2 3 30 30 H 1.08998 * 109.47228 * 30.01973 * 1 2 3 31 31 H 1.09001 * 109.47202 * 150.01905 * 1 2 3 32 32 H 1.08005 * 119.85247 * 180.02562 * 5 3 2 33 33 H 1.07998 * 119.92060 * 179.97438 * 6 5 3 34 34 H 1.09002 * 110.31513 * 63.11369 * 13 12 10 35 35 H 1.09002 * 110.31459 * 300.93498 * 13 12 10 36 36 H 1.09006 * 112.36398 * 191.71452 * 16 14 13 37 37 H 1.08996 * 112.44792 * 64.29616 * 16 14 13 38 38 H 1.08994 * 110.32064 * 47.66880 * 19 17 12 39 39 H 1.08999 * 110.31938 * 169.86031 * 19 17 12 40 40 H 0.97003 * 119.99896 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1995 1.1955 0.0000 4 9 1.5244 2.3658 -0.0005 5 6 3.5853 1.1967 0.0005 6 6 4.2838 0.0033 0.0001 7 6 3.6037 -1.1988 0.0055 8 17 4.4831 -2.6956 0.0122 9 6 2.2065 -1.2077 0.0005 10 6 1.4726 -2.4904 0.0017 11 8 1.1704 -3.0187 -1.0506 12 7 1.1384 -3.0745 1.1695 13 6 1.4269 -2.5712 2.5296 14 6 0.8644 -3.6608 3.4942 15 1 1.2753 -3.6695 4.5037 16 6 1.1214 -4.9414 2.6214 17 6 0.4030 -4.3608 1.3512 18 1 0.3416 -5.0184 0.4839 19 6 -0.9545 -3.9352 1.9916 20 7 -0.6175 -3.5248 3.3717 21 6 -1.4885 -3.1052 4.3416 22 1 -1.1336 -2.9284 5.3462 23 6 -2.8273 -2.9069 4.0333 24 7 -3.2859 -3.2421 2.8460 25 14 -3.9782 -2.1646 5.3037 26 1 -4.0769 -0.6990 5.0858 27 1 -5.3245 -2.7767 5.1696 28 1 -3.4481 -2.4280 6.6656 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5135 32 1 4.1221 2.1339 0.0010 33 1 5.3638 0.0112 0.0001 34 1 0.9209 -1.6202 2.6965 35 1 2.5018 -2.4587 2.6713 36 1 0.6157 -5.8219 3.0179 37 1 2.1825 -5.1227 2.4509 38 1 -1.3861 -3.0983 1.4428 39 1 -1.6469 -4.7769 2.0055 40 1 -4.2214 -3.1032 2.6305 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032484594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:01 Heat of formation + Delta-G solvation = -0.417643 kcal Electronic energy + Delta-G solvation = -27919.302542 eV Core-core repulsion = 23869.216322 eV Total energy + Delta-G solvation = -4050.086220 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.09440 -40.50290 -39.22952 -37.52299 -36.63446 -33.68850 -33.08221 -31.69212 -30.60795 -29.03649 -28.57829 -27.31661 -25.26520 -24.47691 -23.10787 -22.00759 -20.77380 -19.91653 -18.84305 -17.90777 -17.19153 -16.77403 -16.45468 -16.28807 -15.81562 -15.69481 -14.97403 -14.46370 -14.01831 -13.91939 -13.68817 -13.59639 -13.33335 -13.18586 -12.88278 -12.69131 -12.26155 -12.00652 -11.98762 -11.70290 -11.65068 -11.39678 -11.27704 -11.09786 -11.06233 -10.92275 -10.81252 -10.64090 -10.29775 -10.11041 -9.74168 -9.64918 -9.15469 -8.73091 -8.72515 -8.09623 -6.96440 -5.82194 -3.15771 0.62872 0.78562 1.87291 2.77600 3.00822 3.28983 3.34589 3.39985 3.42510 3.99321 4.35106 4.38373 4.46863 4.62857 4.85658 4.99947 5.14884 5.18551 5.28232 5.37840 5.50693 5.52582 5.58905 5.71098 5.72345 5.72778 5.75326 5.90491 6.02030 6.09531 6.16676 6.23589 6.36377 6.43470 6.46708 6.55221 6.62770 7.34945 7.45562 7.67435 7.94179 8.05441 8.38686 9.05815 9.66854 10.36149 11.30278 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012807 B = 0.004565 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.775240 B = 6132.754223 C = 7367.030481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.067 4.067 3 C 0.100 3.900 4 F -0.130 7.130 5 C -0.128 4.128 6 C -0.092 4.092 7 C -0.017 4.017 8 Cl -0.049 7.049 9 C -0.076 4.076 10 C 0.579 3.421 11 O -0.537 6.537 12 N -0.590 5.590 13 C 0.084 3.916 14 C 0.143 3.857 15 H 0.107 0.893 16 C -0.151 4.151 17 C 0.098 3.902 18 H 0.115 0.885 19 C 0.174 3.826 20 N -0.596 5.596 21 C -0.233 4.233 22 H 0.081 0.919 23 C -0.003 4.003 24 N -0.917 5.917 25 Si 0.909 3.091 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.280 1.280 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.617 5.504 -4.109 17.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.069 4.069 3 C 0.081 3.919 4 F -0.108 7.108 5 C -0.147 4.147 6 C -0.111 4.111 7 C -0.044 4.044 8 Cl -0.020 7.020 9 C -0.080 4.080 10 C 0.365 3.635 11 O -0.415 6.415 12 N -0.322 5.322 13 C -0.041 4.041 14 C 0.034 3.966 15 H 0.125 0.875 16 C -0.191 4.191 17 C -0.004 4.004 18 H 0.133 0.867 19 C 0.049 3.951 20 N -0.320 5.320 21 C -0.360 4.360 22 H 0.098 0.902 23 C -0.200 4.200 24 N -0.563 5.563 25 Si 0.740 3.260 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.206 1.206 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.214 5.217 -4.694 16.755 hybrid contribution -0.652 0.690 0.592 1.119 sum 14.562 5.907 -4.102 16.241 Atomic orbital electron populations 1.20875 0.88427 1.04189 1.04441 1.19950 0.97839 0.90009 0.99056 1.17372 0.89911 0.80956 1.03684 1.91518 1.80304 1.45230 1.93758 1.21145 0.91980 0.99497 1.02078 1.20772 1.00763 0.89348 1.00206 1.20876 0.90778 0.88492 1.04297 1.98398 1.75150 1.31799 1.96633 1.19639 0.91816 0.94258 1.02275 1.17378 0.79282 0.83432 0.83384 1.90799 1.55714 1.64478 1.30536 1.49111 1.54631 1.23409 1.05066 1.23338 0.98484 1.00174 0.82132 1.23157 0.86651 0.91078 0.95746 0.87525 1.24171 0.99229 0.99070 0.96639 1.24384 0.94643 0.84175 0.97161 0.86667 1.21944 0.89557 0.99174 0.84401 1.45229 0.99369 1.77217 1.10175 1.19040 0.88818 1.38244 0.89940 0.90167 1.24816 0.97039 1.01178 0.96933 1.69922 1.14375 1.51690 1.20303 0.86148 0.80467 0.79005 0.80418 1.21623 1.21756 1.20574 0.89143 0.90454 0.90058 0.83483 0.83489 0.91025 0.92836 0.89648 0.91532 0.93033 0.92863 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.92 9.44 36.01 0.34 -1.58 16 2 C -0.07 -0.99 5.92 -104.15 -0.62 -1.61 16 3 C 0.10 1.28 7.23 -39.48 -0.29 0.99 16 4 F -0.13 -1.67 16.47 2.25 0.04 -1.64 16 5 C -0.13 -1.28 10.02 -39.44 -0.40 -1.68 16 6 C -0.09 -0.94 9.81 -39.61 -0.39 -1.33 16 7 C -0.02 -0.22 6.35 -39.07 -0.25 -0.47 16 8 Cl -0.05 -0.64 28.04 -51.86 -1.45 -2.09 16 9 C -0.08 -1.19 4.91 -104.95 -0.52 -1.71 16 10 C 0.58 10.68 4.85 -12.36 -0.06 10.62 16 11 O -0.54 -11.50 17.47 5.31 0.09 -11.40 16 12 N -0.59 -10.68 2.95 -157.92 -0.47 -11.14 16 13 C 0.08 1.42 5.99 -1.68 -0.01 1.41 16 14 C 0.14 2.56 5.53 -62.54 -0.35 2.21 16 15 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 16 C -0.15 -2.48 6.81 -22.32 -0.15 -2.63 16 17 C 0.10 1.85 5.23 -62.57 -0.33 1.52 16 18 H 0.12 2.10 8.08 -51.92 -0.42 1.68 16 19 C 0.17 4.01 4.77 -1.67 -0.01 4.00 16 20 N -0.60 -13.74 3.02 -156.32 -0.47 -14.21 16 21 C -0.23 -5.98 10.36 -15.06 -0.16 -6.14 16 22 H 0.08 1.98 7.84 -52.49 -0.41 1.57 16 23 C 0.00 -0.07 5.49 -17.43 -0.10 -0.16 16 24 N -0.92 -25.89 10.61 55.49 0.59 -25.31 16 25 Si 0.91 21.23 29.56 -169.99 -5.02 16.21 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 29 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.08 1.06 7.64 -51.93 -0.40 0.66 16 31 H 0.08 1.43 7.08 -51.93 -0.37 1.06 16 32 H 0.15 1.02 8.06 -52.48 -0.42 0.60 16 33 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 1.36 7.53 -51.93 -0.39 0.97 16 39 H 0.05 1.36 7.64 -51.93 -0.40 0.96 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 351.20 15.07 5.29 5.29 Total: -1.00 -30.13 351.20 -9.57 -39.70 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -4.90 Total: 1.14 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -3.26 Total: 3.45 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.35 Total: -50.66 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.45 Total: -2.09 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.13 -9.57 -39.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032484594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.279 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds