Wall clock time and date at job start Tue Mar 31 2020 20:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38160 * 120.08140 * 2 1 4 4 F 1.35103 * 119.93726 * 359.97438 * 3 2 1 5 5 C 1.38579 * 120.12935 * 179.97438 * 3 2 1 6 6 C 1.38282 * 120.29295 * 0.04566 * 5 3 2 7 7 C 1.38112 * 120.15906 * 359.69560 * 6 5 3 8 8 Cl 1.73596 * 120.06692 * 180.27552 * 7 6 5 9 9 C 1.39567 * 120.07834 * 179.97438 * 2 1 3 10 10 C 1.47777 * 120.14554 * 359.97438 * 9 2 1 11 11 O 1.21559 * 120.00058 * 89.99912 * 10 9 2 12 12 N 1.34782 * 119.99709 * 270.00315 * 10 9 2 13 13 C 1.47866 * 126.94642 * 359.97154 * 12 10 9 14 14 C 1.56019 * 105.10578 * 182.02254 * 13 12 10 15 15 H 1.08997 * 116.24737 * 158.83722 * 14 13 12 16 16 C 1.57090 * 99.60308 * 32.80809 * 14 13 12 17 17 C 1.49284 * 126.94314 * 180.02562 * 12 10 9 18 18 H 1.09009 * 116.78931 * 16.28492 * 17 12 10 19 19 C 1.56017 * 104.09379 * 246.67827 * 17 12 10 20 20 N 1.47874 * 105.10084 * 288.76785 * 19 17 12 21 21 C 1.36942 * 126.94406 * 182.00638 * 20 19 17 22 22 H 1.08001 * 119.99797 * 173.68102 * 21 20 19 23 23 C 1.38811 * 119.99739 * 353.67327 * 21 20 19 24 24 N 1.31617 * 120.00037 * 6.44364 * 23 21 20 25 25 Si 1.86803 * 119.99877 * 186.44068 * 23 21 20 26 26 H 1.48497 * 109.47381 * 94.98644 * 25 23 21 27 27 H 1.48501 * 109.46972 * 214.98821 * 25 23 21 28 28 H 1.48502 * 109.46751 * 334.98444 * 25 23 21 29 29 H 1.09000 * 109.47127 * 270.02160 * 1 2 3 30 30 H 1.08998 * 109.47228 * 30.01973 * 1 2 3 31 31 H 1.09001 * 109.47202 * 150.01905 * 1 2 3 32 32 H 1.08005 * 119.85247 * 180.02562 * 5 3 2 33 33 H 1.07998 * 119.92060 * 179.97438 * 6 5 3 34 34 H 1.09002 * 110.31513 * 63.11369 * 13 12 10 35 35 H 1.09002 * 110.31459 * 300.93498 * 13 12 10 36 36 H 1.09006 * 112.36398 * 191.71452 * 16 14 13 37 37 H 1.08996 * 112.44792 * 64.29616 * 16 14 13 38 38 H 1.08994 * 110.32064 * 47.66880 * 19 17 12 39 39 H 1.08999 * 110.31938 * 169.86031 * 19 17 12 40 40 H 0.97003 * 119.99896 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1995 1.1955 0.0000 4 9 1.5244 2.3658 -0.0005 5 6 3.5853 1.1967 0.0005 6 6 4.2838 0.0033 0.0001 7 6 3.6037 -1.1988 0.0055 8 17 4.4831 -2.6956 0.0122 9 6 2.2065 -1.2077 0.0005 10 6 1.4726 -2.4904 0.0017 11 8 1.1704 -3.0187 -1.0506 12 7 1.1384 -3.0745 1.1695 13 6 1.4269 -2.5712 2.5296 14 6 0.8644 -3.6608 3.4942 15 1 1.2753 -3.6695 4.5037 16 6 1.1214 -4.9414 2.6214 17 6 0.4030 -4.3608 1.3512 18 1 0.3416 -5.0184 0.4839 19 6 -0.9545 -3.9352 1.9916 20 7 -0.6175 -3.5248 3.3717 21 6 -1.4885 -3.1052 4.3416 22 1 -1.1336 -2.9284 5.3462 23 6 -2.8273 -2.9069 4.0333 24 7 -3.2859 -3.2421 2.8460 25 14 -3.9782 -2.1646 5.3037 26 1 -4.0769 -0.6990 5.0858 27 1 -5.3245 -2.7767 5.1696 28 1 -3.4481 -2.4280 6.6656 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5135 32 1 4.1221 2.1339 0.0010 33 1 5.3638 0.0112 0.0001 34 1 0.9209 -1.6202 2.6965 35 1 2.5018 -2.4587 2.6713 36 1 0.6157 -5.8219 3.0179 37 1 2.1825 -5.1227 2.4509 38 1 -1.3861 -3.0983 1.4428 39 1 -1.6469 -4.7769 2.0055 40 1 -4.2214 -3.1032 2.6305 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032484594.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:01 Heat of formation + Delta-G solvation = -16.875387 kcal Electronic energy + Delta-G solvation = -27920.016204 eV Core-core repulsion = 23869.216322 eV Total energy + Delta-G solvation = -4050.799881 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.08472 -41.89555 -40.48624 -38.93717 -37.62499 -35.47862 -34.20845 -33.32196 -31.81481 -30.60815 -30.25162 -28.44289 -26.98922 -25.86518 -24.58386 -23.05999 -22.19775 -21.45846 -20.32421 -19.35314 -18.39125 -18.20201 -17.74428 -17.41450 -17.25691 -16.84888 -16.41591 -16.08301 -15.69504 -15.17490 -14.96341 -14.73019 -14.63276 -14.36542 -14.02350 -14.00523 -13.85136 -13.58269 -13.37612 -13.20056 -13.13132 -12.85093 -12.75000 -12.71867 -12.36906 -12.25386 -12.17624 -12.09201 -12.03681 -11.88853 -11.54473 -11.15900 -10.72411 -10.19158 -9.71691 -9.64002 -8.90202 -7.85491 -5.19767 -0.36669 -0.19238 0.88327 1.35935 1.46803 1.47776 1.56456 1.80359 2.16790 2.48088 2.97652 3.22963 3.32531 3.38099 3.45238 3.62503 3.73767 3.85222 3.89899 4.01333 4.17996 4.19282 4.26713 4.38762 4.52495 4.53144 4.61432 4.78071 4.81045 4.85671 4.89071 4.91788 4.93285 5.00336 5.10882 5.21110 5.43595 5.49714 5.53571 5.65910 6.09745 6.49602 6.93801 7.03265 7.70978 8.41801 9.26162 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012807 B = 0.004565 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.775240 B = 6132.754223 C = 7367.030481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C 0.096 3.904 4 F -0.132 7.132 5 C -0.104 4.104 6 C -0.072 4.072 7 C -0.023 4.023 8 Cl -0.048 7.048 9 C -0.100 4.100 10 C 0.579 3.421 11 O -0.577 6.577 12 N -0.592 5.592 13 C 0.094 3.906 14 C 0.138 3.862 15 H 0.137 0.863 16 C -0.128 4.128 17 C 0.100 3.900 18 H 0.117 0.883 19 C 0.188 3.812 20 N -0.613 5.613 21 C -0.229 4.229 22 H 0.094 0.906 23 C -0.065 4.065 24 N -0.953 5.953 25 Si 0.971 3.029 26 H -0.293 1.293 27 H -0.302 1.302 28 H -0.261 1.261 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.190 0.810 33 H 0.189 0.811 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.003 0.997 39 H 0.017 0.983 40 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.732 6.885 -2.811 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.090 4.090 3 C 0.076 3.924 4 F -0.111 7.111 5 C -0.122 4.122 6 C -0.091 4.091 7 C -0.050 4.050 8 Cl -0.019 7.019 9 C -0.103 4.103 10 C 0.368 3.632 11 O -0.458 6.458 12 N -0.323 5.323 13 C -0.030 4.030 14 C 0.032 3.968 15 H 0.154 0.846 16 C -0.167 4.167 17 C -0.003 4.003 18 H 0.135 0.865 19 C 0.063 3.937 20 N -0.338 5.338 21 C -0.358 4.358 22 H 0.112 0.888 23 C -0.258 4.258 24 N -0.602 5.602 25 Si 0.800 3.200 26 H -0.221 1.221 27 H -0.229 1.229 28 H -0.186 1.186 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.208 0.792 33 H 0.206 0.794 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.022 0.978 39 H 0.035 0.965 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 19.387 6.604 -3.354 20.754 hybrid contribution -1.857 0.297 0.165 1.888 sum 17.530 6.901 -3.189 19.107 Atomic orbital electron populations 1.20690 0.90194 1.03305 1.02881 1.19849 0.96878 0.91125 1.01105 1.17514 0.91065 0.79933 1.03858 1.91515 1.80669 1.45084 1.93803 1.21611 0.90480 1.01269 0.98859 1.21250 1.02606 0.87782 0.97421 1.21062 0.89750 0.89760 1.04449 1.98399 1.74722 1.32116 1.96627 1.19414 0.92963 0.92652 1.05316 1.17850 0.78684 0.84075 0.82620 1.90758 1.57345 1.65842 1.31851 1.49154 1.54234 1.23141 1.05758 1.23197 1.00176 0.98561 0.81056 1.23556 0.83425 0.92072 0.97777 0.84557 1.24067 1.00780 0.98033 0.93843 1.24233 0.92681 0.85070 0.98288 0.86541 1.21525 0.91312 0.95985 0.84926 1.45453 1.01841 1.76990 1.09486 1.19497 0.89195 1.36108 0.90955 0.88781 1.25596 0.98929 1.02659 0.98631 1.70152 1.13825 1.53849 1.22384 0.85164 0.78068 0.77561 0.79211 1.22081 1.22927 1.18552 0.91161 0.89001 0.93202 0.79241 0.79387 0.93191 0.89226 0.89615 0.88091 0.97831 0.96493 0.94721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.82 9.44 71.24 0.67 -3.15 16 2 C -0.09 -2.60 5.92 -19.56 -0.12 -2.72 16 3 C 0.10 2.22 7.23 22.33 0.16 2.38 16 4 F -0.13 -3.16 16.47 44.97 0.74 -2.42 16 5 C -0.10 -1.58 10.02 22.36 0.22 -1.35 16 6 C -0.07 -1.12 9.81 22.25 0.22 -0.90 16 7 C -0.02 -0.53 6.35 22.60 0.14 -0.39 16 8 Cl -0.05 -1.11 28.04 -2.72 -0.08 -1.18 16 9 C -0.10 -3.06 4.91 -20.07 -0.10 -3.16 16 10 C 0.58 21.82 4.85 86.77 0.42 22.24 16 11 O -0.58 -25.77 17.47 -3.90 -0.07 -25.84 16 12 N -0.59 -21.59 2.95 -771.82 -2.27 -23.86 16 13 C 0.09 3.08 5.99 87.16 0.52 3.60 16 14 C 0.14 4.71 5.53 46.93 0.26 4.97 16 15 H 0.14 3.88 8.14 -2.39 -0.02 3.86 16 16 C -0.13 -3.95 6.81 33.45 0.23 -3.72 16 17 C 0.10 3.84 5.23 46.92 0.25 4.08 16 18 H 0.12 4.42 8.08 -2.38 -0.02 4.40 16 19 C 0.19 9.22 4.77 87.16 0.42 9.64 16 20 N -0.61 -28.77 3.02 -648.48 -1.96 -30.73 16 21 C -0.23 -11.89 10.36 84.03 0.87 -11.02 16 22 H 0.09 4.53 7.84 -2.91 -0.02 4.51 16 23 C -0.07 -3.60 5.49 84.86 0.47 -3.13 16 24 N -0.95 -57.21 10.61 21.65 0.23 -56.98 16 25 Si 0.97 44.77 29.56 68.60 2.03 46.80 16 26 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 27 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 28 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 29 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.09 2.67 7.64 -2.39 -0.02 2.65 16 31 H 0.05 1.94 7.08 -2.39 -0.02 1.92 16 32 H 0.19 1.36 8.06 -2.91 -0.02 1.34 16 33 H 0.19 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.09 2.69 8.14 -2.38 -0.02 2.67 16 37 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.00 0.20 7.53 -2.39 -0.02 0.18 16 39 H 0.02 0.93 7.64 -2.39 -0.02 0.92 16 40 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -71.35 351.20 4.33 -67.02 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 1.07 Total: 9.83 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 4.63 Total: 17.38 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -4.00 Total: -111.58 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.07 Total: -25.84 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.74 Total: -2.42 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.18 kcal Total: -71.35 4.33 -67.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032484594.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.144 kcal (2) G-P(sol) polarization free energy of solvation -71.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds