Wall clock time and date at job start Tue Mar 31 2020 20:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38447 * 119.83440 * 2 1 4 4 C 1.37857 * 120.23148 * 180.29770 * 3 2 1 5 5 C 1.39671 * 119.90015 * 359.43166 * 4 3 2 6 6 C 1.47685 * 120.16184 * 180.29276 * 5 4 3 7 7 O 1.21578 * 120.00052 * 136.32089 * 6 5 4 8 8 N 1.34783 * 120.00306 * 316.32682 * 6 5 4 9 9 C 1.47864 * 126.94137 * 4.89707 * 8 6 5 10 10 C 1.56016 * 105.10235 * 181.98209 * 9 8 6 11 11 H 1.09001 * 116.24752 * 158.83414 * 10 9 8 12 12 C 1.57082 * 99.60822 * 32.80516 * 10 9 8 13 13 C 1.49286 * 126.94434 * 184.58190 * 8 6 5 14 14 H 1.08998 * 116.15146 * 15.86446 * 13 8 6 15 15 C 1.58427 * 103.70063 * 246.54201 * 13 8 6 16 16 N 1.47860 * 104.83497 * 288.54784 * 15 13 8 17 17 C 1.36943 * 126.94745 * 182.30349 * 16 15 13 18 18 H 1.07993 * 120.00101 * 185.00751 * 17 16 15 19 19 C 1.38813 * 119.99607 * 5.00752 * 17 16 15 20 20 N 1.31625 * 120.00205 * 353.95088 * 19 17 16 21 21 Si 1.86800 * 119.99885 * 173.95458 * 19 17 16 22 22 H 1.48500 * 109.47136 * 94.99103 * 21 19 17 23 23 H 1.48501 * 109.47261 * 214.99442 * 21 19 17 24 24 H 1.48499 * 109.46967 * 334.99117 * 21 19 17 25 25 C 1.39801 * 119.67306 * 0.56558 * 5 4 3 26 26 F 1.35109 * 120.10810 * 179.70581 * 25 5 4 27 27 C 1.38298 * 119.83976 * 180.02562 * 2 1 3 28 28 Cl 1.73601 * 119.95100 * 359.97438 * 27 2 1 29 29 H 1.08997 * 109.46938 * 90.00212 * 1 2 3 30 30 H 1.09006 * 109.46722 * 210.00040 * 1 2 3 31 31 H 1.09000 * 109.47319 * 329.99413 * 1 2 3 32 32 H 1.08003 * 119.88634 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.04884 * 179.72628 * 4 3 2 34 34 H 1.09008 * 110.31724 * 300.88848 * 9 8 6 35 35 H 1.08994 * 110.31656 * 63.07483 * 9 8 6 36 36 H 1.08997 * 112.36963 * 64.27739 * 12 10 9 37 37 H 1.09004 * 112.36564 * 191.71430 * 12 10 9 38 38 H 1.09001 * 110.18946 * 169.85339 * 15 13 8 39 39 H 1.09002 * 110.78831 * 47.54289 * 15 13 8 40 40 H 0.97001 * 119.99810 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2010 0.0000 4 6 3.5743 1.2105 -0.0062 5 6 4.2790 0.0046 -0.0005 6 6 5.7558 0.0082 -0.0005 7 8 6.3656 -0.7484 0.7302 8 7 6.4278 0.8502 -0.8106 9 6 5.8499 1.8968 -1.6806 10 6 7.0686 2.5255 -2.4246 11 1 6.8472 3.0528 -3.3525 12 6 7.9875 1.2568 -2.5413 13 6 7.9062 0.9188 -1.0058 14 1 8.4778 0.0605 -0.6528 15 6 8.2992 2.3302 -0.4028 16 7 7.7702 3.3156 -1.3700 17 6 7.8980 4.6778 -1.3105 18 1 7.3965 5.2995 -2.0373 19 6 8.6721 5.2594 -0.3158 20 7 9.1856 4.5133 0.6393 21 14 8.9851 7.1009 -0.3327 22 1 7.9909 7.7799 0.5367 23 1 10.3541 7.3751 0.1732 24 1 8.8590 7.6117 -1.7214 25 6 3.5794 -1.2057 -0.0005 26 9 4.2522 -2.3774 -0.0010 27 6 2.1952 -1.1996 -0.0005 28 17 1.3217 -2.6999 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5139 31 1 -0.3634 0.8899 0.5139 32 1 1.6512 2.1337 0.0004 33 1 4.1086 2.1491 -0.0106 34 1 5.1569 1.4541 -2.3962 35 1 5.3432 2.6516 -1.0792 36 1 7.5446 0.4797 -3.1641 37 1 9.0005 1.5060 -2.8572 38 1 9.3830 2.4184 -0.3271 39 1 7.8392 2.4749 0.5747 40 1 9.7263 4.9198 1.3345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032536497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:52 Heat of formation + Delta-G solvation = 3.464844 kcal Electronic energy + Delta-G solvation = -27279.698736 eV Core-core repulsion = 23229.780873 eV Total energy + Delta-G solvation = -4049.917863 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.01791 -40.39710 -39.26705 -37.73237 -36.71490 -33.81974 -33.08050 -31.49893 -30.71370 -29.14040 -28.62796 -27.62089 -25.31611 -23.90134 -23.09609 -22.46478 -20.88438 -19.90850 -18.93453 -17.76614 -17.21130 -16.95939 -16.56179 -16.09108 -15.70699 -15.43935 -14.90463 -14.60752 -14.35428 -14.12061 -13.95656 -13.70610 -13.45583 -13.23036 -12.61891 -12.51823 -12.35513 -12.21975 -12.08638 -11.84184 -11.65892 -11.59191 -11.35478 -11.15622 -11.06478 -10.89327 -10.80141 -10.64527 -10.29681 -10.14837 -9.71749 -9.68803 -9.02798 -8.92582 -8.74814 -8.08748 -7.00057 -5.83882 -3.18178 0.53265 0.75585 1.71768 2.75170 3.15390 3.32872 3.38502 3.39475 3.41288 3.80846 4.32437 4.36194 4.47783 4.62205 4.75876 4.97571 5.09280 5.10914 5.19446 5.25369 5.29506 5.47795 5.51835 5.54919 5.58618 5.64816 5.72465 5.84388 5.88954 5.96519 6.11945 6.20465 6.32948 6.33486 6.45538 6.51468 6.60659 7.36943 7.41099 7.65934 7.92440 8.03380 8.39704 9.03428 9.64556 10.33726 11.28241 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.018940 B = 0.003212 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.010004 B = 8713.880111 C = 9470.226385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.034 4.034 3 C -0.125 4.125 4 C -0.050 4.050 5 C -0.147 4.147 6 C 0.572 3.428 7 O -0.535 6.535 8 N -0.597 5.597 9 C 0.079 3.921 10 C 0.142 3.858 11 H 0.107 0.893 12 C -0.151 4.151 13 C 0.097 3.903 14 H 0.116 0.884 15 C 0.175 3.825 16 N -0.597 5.597 17 C -0.234 4.234 18 H 0.081 0.919 19 C -0.004 4.004 20 N -0.917 5.917 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.161 3.839 26 F -0.111 7.111 27 C -0.088 4.088 28 Cl -0.047 7.047 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.145 0.855 33 H 0.152 0.848 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.387 -8.627 -4.946 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.035 4.035 3 C -0.143 4.143 4 C -0.069 4.069 5 C -0.151 4.151 6 C 0.359 3.641 7 O -0.414 6.414 8 N -0.330 5.330 9 C -0.046 4.046 10 C 0.033 3.967 11 H 0.125 0.875 12 C -0.190 4.190 13 C -0.005 4.005 14 H 0.134 0.866 15 C 0.050 3.950 16 N -0.321 5.321 17 C -0.362 4.362 18 H 0.099 0.901 19 C -0.201 4.201 20 N -0.563 5.563 21 Si 0.742 3.258 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.139 3.861 26 F -0.089 7.089 27 C -0.115 4.115 28 Cl -0.018 7.018 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.163 0.837 33 H 0.170 0.830 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.009 -9.054 -4.331 18.895 hybrid contribution 0.206 0.643 0.206 0.707 sum -15.803 -8.410 -4.125 18.371 Atomic orbital electron populations 1.20948 0.89359 1.04029 1.03463 1.19806 0.97164 0.90489 0.96047 1.21038 0.93704 0.97545 1.02015 1.21629 0.94211 0.97619 0.93419 1.20034 0.94855 0.92423 1.07814 1.17439 0.85586 0.80565 0.80491 1.90809 1.69117 1.41265 1.40162 1.49102 1.08797 1.33485 1.41629 1.23526 0.98321 0.89544 0.93250 1.23156 0.90074 0.90742 0.92741 0.87503 1.24195 1.01474 0.98425 0.94945 1.24952 0.79182 1.00328 0.96078 0.86617 1.22395 0.98585 0.82048 0.91943 1.45226 1.62702 1.01796 1.22417 1.19032 1.25494 0.79915 1.11777 0.90081 1.24849 0.99723 0.98136 0.97365 1.69917 1.38210 1.33948 1.14214 0.86122 0.77506 0.84678 0.77539 1.21662 1.21620 1.20538 1.17259 0.87703 0.81451 0.99651 1.91594 1.79993 1.44477 1.92882 1.20663 0.90080 0.88950 1.11844 1.98367 1.75499 1.30955 1.97004 0.89950 0.90492 0.90343 0.83710 0.83007 0.92576 0.90741 0.91474 0.89566 0.92291 0.93449 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 9.60 36.01 0.35 -0.49 16 2 C -0.03 -0.34 5.89 -104.52 -0.62 -0.95 16 3 C -0.12 -1.23 9.67 -39.64 -0.38 -1.62 16 4 C -0.05 -0.64 8.59 -39.19 -0.34 -0.98 16 5 C -0.15 -2.30 5.52 -104.92 -0.58 -2.88 16 6 C 0.57 10.91 7.30 -12.40 -0.09 10.82 16 7 O -0.54 -12.03 16.80 5.30 0.09 -11.95 16 8 N -0.60 -10.89 2.95 -156.23 -0.46 -11.35 16 9 C 0.08 1.26 4.94 -1.68 -0.01 1.25 16 10 C 0.14 2.49 5.47 -62.55 -0.34 2.15 16 11 H 0.11 1.67 8.14 -51.93 -0.42 1.24 16 12 C -0.15 -2.47 6.86 -22.10 -0.15 -2.62 16 13 C 0.10 1.84 5.34 -60.97 -0.33 1.51 16 14 H 0.12 2.16 8.07 -51.93 -0.42 1.74 16 15 C 0.18 4.08 4.90 -0.30 0.00 4.08 16 16 N -0.60 -13.72 3.02 -154.77 -0.47 -14.18 16 17 C -0.23 -5.97 10.37 -15.06 -0.16 -6.13 16 18 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 19 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 20 N -0.92 -25.99 10.59 55.49 0.59 -25.41 16 21 Si 0.91 21.02 29.56 -169.99 -5.02 16.00 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 C 0.16 2.42 7.22 -38.93 -0.28 2.14 16 26 F -0.11 -1.89 15.93 2.25 0.04 -1.85 16 27 C -0.09 -1.08 6.31 -39.49 -0.25 -1.33 16 28 Cl -0.05 -0.52 26.93 -51.86 -1.40 -1.92 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.53 6.88 -51.93 -0.36 0.18 16 31 H 0.08 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.15 1.01 8.06 -52.48 -0.42 0.58 16 33 H 0.15 1.96 5.68 -52.49 -0.30 1.66 16 34 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 35 H 0.07 1.24 6.07 -51.93 -0.32 0.92 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.06 1.52 7.36 -51.93 -0.38 1.14 16 39 H 0.05 1.27 7.78 -51.93 -0.40 0.87 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 345.41 15.07 5.21 5.21 Total: -1.00 -31.32 345.41 -9.38 -40.70 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -4.68 Total: -0.03 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -3.27 Total: 4.77 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.34 Total: -50.94 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.95 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.40 Total: -1.92 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.32 -9.38 -40.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032536497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.169 kcal (2) G-P(sol) polarization free energy of solvation -31.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds