Wall clock time and date at job start Tue Mar 31 2020 20:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38447 * 119.83440 * 2 1 4 4 C 1.37857 * 120.23148 * 180.29770 * 3 2 1 5 5 C 1.39671 * 119.90015 * 359.43166 * 4 3 2 6 6 C 1.47685 * 120.16184 * 180.29276 * 5 4 3 7 7 O 1.21578 * 120.00052 * 136.32089 * 6 5 4 8 8 N 1.34783 * 120.00306 * 316.32682 * 6 5 4 9 9 C 1.47864 * 126.94137 * 4.89707 * 8 6 5 10 10 C 1.56016 * 105.10235 * 181.98209 * 9 8 6 11 11 H 1.09001 * 116.24752 * 158.83414 * 10 9 8 12 12 C 1.57082 * 99.60822 * 32.80516 * 10 9 8 13 13 C 1.49286 * 126.94434 * 184.58190 * 8 6 5 14 14 H 1.08998 * 116.15146 * 15.86446 * 13 8 6 15 15 C 1.58427 * 103.70063 * 246.54201 * 13 8 6 16 16 N 1.47860 * 104.83497 * 288.54784 * 15 13 8 17 17 C 1.36943 * 126.94745 * 182.30349 * 16 15 13 18 18 H 1.07993 * 120.00101 * 185.00751 * 17 16 15 19 19 C 1.38813 * 119.99607 * 5.00752 * 17 16 15 20 20 N 1.31625 * 120.00205 * 353.95088 * 19 17 16 21 21 Si 1.86800 * 119.99885 * 173.95458 * 19 17 16 22 22 H 1.48500 * 109.47136 * 94.99103 * 21 19 17 23 23 H 1.48501 * 109.47261 * 214.99442 * 21 19 17 24 24 H 1.48499 * 109.46967 * 334.99117 * 21 19 17 25 25 C 1.39801 * 119.67306 * 0.56558 * 5 4 3 26 26 F 1.35109 * 120.10810 * 179.70581 * 25 5 4 27 27 C 1.38298 * 119.83976 * 180.02562 * 2 1 3 28 28 Cl 1.73601 * 119.95100 * 359.97438 * 27 2 1 29 29 H 1.08997 * 109.46938 * 90.00212 * 1 2 3 30 30 H 1.09006 * 109.46722 * 210.00040 * 1 2 3 31 31 H 1.09000 * 109.47319 * 329.99413 * 1 2 3 32 32 H 1.08003 * 119.88634 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.04884 * 179.72628 * 4 3 2 34 34 H 1.09008 * 110.31724 * 300.88848 * 9 8 6 35 35 H 1.08994 * 110.31656 * 63.07483 * 9 8 6 36 36 H 1.08997 * 112.36963 * 64.27739 * 12 10 9 37 37 H 1.09004 * 112.36564 * 191.71430 * 12 10 9 38 38 H 1.09001 * 110.18946 * 169.85339 * 15 13 8 39 39 H 1.09002 * 110.78831 * 47.54289 * 15 13 8 40 40 H 0.97001 * 119.99810 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2010 0.0000 4 6 3.5743 1.2105 -0.0062 5 6 4.2790 0.0046 -0.0005 6 6 5.7558 0.0082 -0.0005 7 8 6.3656 -0.7484 0.7302 8 7 6.4278 0.8502 -0.8106 9 6 5.8499 1.8968 -1.6806 10 6 7.0686 2.5255 -2.4246 11 1 6.8472 3.0528 -3.3525 12 6 7.9875 1.2568 -2.5413 13 6 7.9062 0.9188 -1.0058 14 1 8.4778 0.0605 -0.6528 15 6 8.2992 2.3302 -0.4028 16 7 7.7702 3.3156 -1.3700 17 6 7.8980 4.6778 -1.3105 18 1 7.3965 5.2995 -2.0373 19 6 8.6721 5.2594 -0.3158 20 7 9.1856 4.5133 0.6393 21 14 8.9851 7.1009 -0.3327 22 1 7.9909 7.7799 0.5367 23 1 10.3541 7.3751 0.1732 24 1 8.8590 7.6117 -1.7214 25 6 3.5794 -1.2057 -0.0005 26 9 4.2522 -2.3774 -0.0010 27 6 2.1952 -1.1996 -0.0005 28 17 1.3217 -2.6999 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5139 31 1 -0.3634 0.8899 0.5139 32 1 1.6512 2.1337 0.0004 33 1 4.1086 2.1491 -0.0106 34 1 5.1569 1.4541 -2.3962 35 1 5.3432 2.6516 -1.0792 36 1 7.5446 0.4797 -3.1641 37 1 9.0005 1.5060 -2.8572 38 1 9.3830 2.4184 -0.3271 39 1 7.8392 2.4749 0.5747 40 1 9.7263 4.9198 1.3345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032536497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:51 Heat of formation + Delta-G solvation = -14.381757 kcal Electronic energy + Delta-G solvation = -27280.472623 eV Core-core repulsion = 23229.780873 eV Total energy + Delta-G solvation = -4050.691749 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.18891 -41.78760 -40.38830 -39.18719 -37.64490 -35.53704 -34.20302 -33.06056 -31.71149 -30.70505 -30.24542 -28.55193 -27.03136 -25.43685 -24.08894 -23.65064 -22.24675 -21.42805 -20.43880 -19.24569 -18.33822 -18.15556 -18.06548 -17.37358 -17.08825 -16.88225 -16.17344 -16.03076 -15.63425 -15.50682 -15.02740 -14.87283 -14.70276 -14.62927 -13.88162 -13.66234 -13.55173 -13.35364 -13.24539 -13.14143 -12.93228 -12.88118 -12.72636 -12.66233 -12.53651 -12.27475 -12.15618 -12.04013 -12.02248 -11.86325 -11.53152 -11.17794 -10.70860 -9.98431 -9.91180 -9.59159 -8.91658 -7.84073 -5.19425 -0.46940 -0.20882 0.79343 1.49105 1.49364 1.50902 1.59916 1.80864 2.28048 2.49874 2.80373 3.18261 3.34084 3.40552 3.61317 3.65182 3.75415 3.84661 3.90073 3.91321 4.15428 4.22220 4.42052 4.51434 4.57653 4.68452 4.73600 4.81271 4.82280 4.90580 4.98706 4.99923 5.11598 5.17848 5.19230 5.23300 5.45274 5.48896 5.53246 5.66144 6.09808 6.48344 6.93276 7.03257 7.71711 8.42468 9.27457 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.018940 B = 0.003212 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.010004 B = 8713.880111 C = 9470.226385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.018 4.018 3 C -0.106 4.106 4 C -0.051 4.051 5 C -0.170 4.170 6 C 0.566 3.434 7 O -0.585 6.585 8 N -0.599 5.599 9 C 0.086 3.914 10 C 0.139 3.861 11 H 0.140 0.860 12 C -0.130 4.130 13 C 0.097 3.903 14 H 0.112 0.888 15 C 0.189 3.811 16 N -0.615 5.615 17 C -0.228 4.228 18 H 0.099 0.901 19 C -0.070 4.070 20 N -0.957 5.957 21 Si 0.976 3.024 22 H -0.291 1.291 23 H -0.304 1.304 24 H -0.260 1.260 25 C 0.137 3.863 26 F -0.132 7.132 27 C -0.091 4.091 28 Cl -0.038 7.038 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.186 0.814 33 H 0.148 0.852 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.021 0.979 39 H -0.002 1.002 40 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.080 -7.692 -7.461 22.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.019 4.019 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.174 4.174 6 C 0.355 3.645 7 O -0.466 6.466 8 N -0.330 5.330 9 C -0.038 4.038 10 C 0.032 3.968 11 H 0.157 0.843 12 C -0.169 4.169 13 C -0.006 4.006 14 H 0.130 0.870 15 C 0.063 3.937 16 N -0.339 5.339 17 C -0.357 4.357 18 H 0.117 0.883 19 C -0.262 4.262 20 N -0.606 5.606 21 Si 0.805 3.195 22 H -0.218 1.218 23 H -0.231 1.231 24 H -0.184 1.184 25 C 0.116 3.884 26 F -0.110 7.110 27 C -0.119 4.119 28 Cl -0.009 7.009 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.121 0.879 32 H 0.203 0.797 33 H 0.166 0.834 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.103 0.897 38 H 0.039 0.961 39 H 0.016 0.984 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -19.754 -8.113 -6.918 22.448 hybrid contribution 1.226 0.315 0.976 1.599 sum -18.528 -7.798 -5.942 20.962 Atomic orbital electron populations 1.21099 0.86495 1.05274 1.04958 1.20279 0.99004 0.89417 0.93246 1.21445 0.92354 0.99127 0.99411 1.21651 0.95507 0.96136 0.93639 1.19796 0.92570 0.93973 1.11038 1.18056 0.87255 0.79732 0.79458 1.90764 1.70569 1.43284 1.42019 1.49174 1.08290 1.33841 1.41729 1.23499 0.97985 0.89002 0.93293 1.23571 0.90129 0.90499 0.92591 0.84269 1.24113 1.01535 0.98543 0.92676 1.24789 0.80218 0.97483 0.98101 0.87033 1.21955 0.95890 0.85205 0.90658 1.45456 1.63148 1.01463 1.23826 1.19541 1.23791 0.81433 1.10897 0.88285 1.25672 1.00720 1.02129 0.97701 1.70163 1.39812 1.35412 1.15213 0.85098 0.76204 0.80087 0.78152 1.21836 1.23148 1.18450 1.17526 0.88848 0.80653 1.01410 1.91533 1.80657 1.45509 1.93315 1.20823 0.89128 0.90328 1.11636 1.98370 1.74909 1.30686 1.96940 0.88064 0.90565 0.87876 0.79686 0.83402 0.88544 0.91263 0.88066 0.89743 0.96099 0.98425 0.94736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.60 71.24 0.68 -0.40 16 2 C -0.02 -0.30 5.89 -19.80 -0.12 -0.41 16 3 C -0.11 -1.65 9.67 22.23 0.22 -1.44 16 4 C -0.05 -1.19 8.59 22.53 0.19 -1.00 16 5 C -0.17 -5.26 5.52 -20.06 -0.11 -5.37 16 6 C 0.57 22.20 7.30 86.74 0.63 22.84 16 7 O -0.58 -27.84 16.80 -3.96 -0.07 -27.91 16 8 N -0.60 -21.89 2.95 -766.44 -2.26 -24.15 16 9 C 0.09 2.56 4.94 87.16 0.43 2.99 16 10 C 0.14 4.52 5.47 46.93 0.26 4.78 16 11 H 0.14 3.70 8.14 -2.39 -0.02 3.68 16 12 C -0.13 -3.99 6.86 33.59 0.23 -3.76 16 13 C 0.10 3.78 5.34 47.96 0.26 4.04 16 14 H 0.11 4.40 8.07 -2.39 -0.02 4.38 16 15 C 0.19 9.30 4.90 88.06 0.43 9.73 16 16 N -0.61 -28.26 3.02 -643.58 -1.95 -30.20 16 17 C -0.23 -11.54 10.37 84.03 0.87 -10.67 16 18 H 0.10 4.56 7.83 -2.91 -0.02 4.54 16 19 C -0.07 -3.78 5.49 84.86 0.47 -3.32 16 20 N -0.96 -57.20 10.59 21.65 0.23 -56.98 16 21 Si 0.98 43.81 29.56 68.60 2.03 45.84 16 22 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 23 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 25 C 0.14 4.09 7.22 22.69 0.16 4.25 16 26 F -0.13 -4.60 15.93 44.97 0.72 -3.88 16 27 C -0.09 -2.07 6.31 22.33 0.14 -1.93 16 28 Cl -0.04 -0.78 26.93 -2.72 -0.07 -0.85 16 29 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.08 0.75 6.88 -2.38 -0.02 0.73 16 31 H 0.10 0.48 8.08 -2.39 -0.02 0.47 16 32 H 0.19 1.46 8.06 -2.91 -0.02 1.43 16 33 H 0.15 3.57 5.68 -2.91 -0.02 3.56 16 34 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 35 H 0.07 2.18 6.07 -2.39 -0.01 2.17 16 36 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.02 1.17 7.36 -2.39 -0.02 1.15 16 39 H 0.00 -0.14 7.78 -2.39 -0.02 -0.16 16 40 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -74.54 345.41 4.46 -70.08 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 1.08 Total: 7.71 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: 4.75 Total: 20.34 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -3.98 Total: -111.32 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.07 Total: -27.91 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.72 Total: -3.88 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.07 Total: -0.85 kcal Total: -74.54 4.46 -70.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032536497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.699 kcal (2) G-P(sol) polarization free energy of solvation -74.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds