Wall clock time and date at job start Tue Mar 31 2020 20:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 119.99944 * 2 1 4 4 H 1.48500 * 109.46900 * 240.00011 * 3 2 1 5 5 H 1.48500 * 109.46912 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46967 * 119.99987 * 3 2 1 7 7 C 1.38812 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00217 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.49960 * 126.74342 * 0.35491 * 9 7 2 11 11 C 1.56015 * 104.10004 * 182.13392 * 10 9 7 12 12 H 1.09000 * 116.24346 * 159.12023 * 11 10 9 13 13 C 1.57082 * 100.41925 * 32.49192 * 11 10 9 14 14 C 1.49284 * 126.94610 * 180.02562 * 9 7 2 15 15 H 1.09004 * 116.15484 * 16.70282 * 14 9 7 16 16 C 1.55997 * 104.31646 * 246.61472 * 14 9 7 17 17 N 1.47864 * 105.11802 * 289.11316 * 16 14 9 18 18 C 1.34774 * 126.94775 * 181.87835 * 17 16 14 19 19 O 1.21280 * 120.00178 * 179.68568 * 18 17 16 20 20 C 1.50694 * 119.99634 * 359.68271 * 18 17 16 21 21 C 1.50705 * 109.47169 * 180.02562 * 20 18 17 22 22 C 1.38264 * 119.97373 * 89.99517 * 21 20 18 23 23 C 1.38218 * 120.06094 * 180.02562 * 22 21 20 24 24 C 1.38323 * 120.01099 * 359.97438 * 23 22 21 25 25 Cl 1.73602 * 120.02523 * 179.97438 * 24 23 22 26 26 C 1.38555 * 119.95145 * 359.97438 * 24 23 22 27 27 F 1.35098 * 120.02853 * 179.72821 * 26 24 23 28 28 C 1.38194 * 119.97326 * 269.97887 * 21 20 18 29 29 H 0.97006 * 120.00229 * 0.02562 * 1 2 3 30 30 H 1.09001 * 111.27245 * 63.32139 * 10 9 7 31 31 H 1.09001 * 110.31855 * 300.48399 * 10 9 7 32 32 H 1.08995 * 112.36638 * 64.05875 * 13 11 10 33 33 H 1.08999 * 112.36755 * 191.50587 * 13 11 10 34 34 H 1.09000 * 110.41379 * 170.14705 * 16 14 9 35 35 H 1.08998 * 110.20414 * 47.96896 * 16 14 9 36 36 H 1.08995 * 109.47546 * 60.00147 * 20 18 17 37 37 H 1.09005 * 109.47663 * 299.99838 * 20 18 17 38 38 H 1.07994 * 119.97199 * 0.02562 * 22 21 20 39 39 H 1.07992 * 119.99809 * 180.02562 * 23 22 21 40 40 H 1.08000 * 120.00964 * 0.02562 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1636 -2.5642 -0.0074 11 6 -0.3637 -4.1104 0.0523 12 1 -1.3347 -4.4574 0.4058 13 6 0.8843 -4.5253 0.9112 14 6 1.9102 -3.7617 -0.0005 15 1 2.9607 -3.8368 0.2807 16 6 1.5093 -4.3516 -1.3879 17 7 0.0515 -4.5835 -1.3016 18 6 -0.7412 -5.1192 -2.2509 19 8 -1.9279 -5.2577 -2.0428 20 6 -0.1528 -5.5462 -3.5709 21 6 -1.2419 -6.1077 -4.4482 22 6 -1.9463 -5.2721 -5.2952 23 6 -2.9459 -5.7851 -6.1003 24 6 -3.2422 -7.1356 -6.0596 25 17 -4.4980 -7.7801 -7.0701 26 6 -2.5359 -7.9735 -5.2118 27 9 -2.8277 -9.2919 -5.1668 28 6 -1.5356 -7.4574 -4.4058 29 1 -0.4851 0.8401 -0.0004 30 1 -0.6054 -2.1604 -0.9184 31 1 -0.6048 -2.0912 0.8699 32 1 0.8458 -4.1194 1.9220 33 1 1.0495 -5.6027 0.9092 34 1 2.0320 -5.2911 -1.5670 35 1 1.7325 -3.6365 -2.1797 36 1 0.6065 -6.3093 -3.4005 37 1 0.3011 -4.6853 -4.0619 38 1 -1.7152 -4.2176 -5.3278 39 1 -3.4951 -5.1316 -6.7617 40 1 -0.9850 -8.1094 -3.7438 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032648634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:14 Heat of formation + Delta-G solvation = -1.464467 kcal Electronic energy + Delta-G solvation = -26496.007730 eV Core-core repulsion = 22445.876116 eV Total energy + Delta-G solvation = -4050.131614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.11272 -40.28256 -39.38702 -37.75682 -36.72574 -33.64084 -32.82556 -31.52696 -30.88744 -29.26620 -28.60374 -27.47887 -25.23697 -23.64449 -23.21342 -22.25891 -20.50994 -19.90046 -18.52641 -17.64150 -17.29142 -16.92661 -16.63478 -16.34060 -15.90263 -15.68614 -15.21024 -14.57702 -14.33769 -14.00407 -13.95367 -13.73605 -13.32159 -13.18480 -13.05030 -12.47078 -12.29521 -12.00957 -11.81934 -11.74999 -11.63621 -11.51659 -11.33412 -11.13715 -11.06780 -10.90189 -10.82693 -10.63768 -10.34417 -10.14299 -9.66892 -9.60275 -9.16157 -8.81383 -8.72564 -8.08659 -6.99710 -5.81881 -3.16466 0.73657 0.90784 1.79378 2.93676 3.08021 3.33672 3.38206 3.40357 3.47505 3.86048 4.33788 4.36701 4.48235 4.76154 4.84796 4.95768 5.07304 5.11615 5.16148 5.29206 5.32881 5.50013 5.50309 5.58206 5.61374 5.71505 5.74249 5.82935 5.84988 6.09730 6.21196 6.22005 6.34559 6.41076 6.49263 6.52654 6.62329 7.35744 7.40561 7.64600 7.98914 8.02690 8.49021 9.01893 9.65328 10.33757 11.30438 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.020594 B = 0.002533 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.323868 B =11050.441008 C =11790.932118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.233 4.233 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.176 3.824 11 C 0.097 3.903 12 H 0.112 0.888 13 C -0.152 4.152 14 C 0.142 3.858 15 H 0.107 0.893 16 C 0.082 3.918 17 N -0.606 5.606 18 C 0.529 3.471 19 O -0.548 6.548 20 C -0.102 4.102 21 C -0.023 4.023 22 C -0.101 4.101 23 C -0.080 4.080 24 C -0.077 4.077 25 Cl -0.057 7.057 26 C 0.109 3.891 27 F -0.129 7.129 28 C -0.129 4.129 29 H 0.255 0.745 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.672 -14.525 -9.944 17.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.361 4.361 8 H 0.098 0.902 9 N -0.325 5.325 10 C 0.052 3.948 11 C -0.005 4.005 12 H 0.129 0.871 13 C -0.191 4.191 14 C 0.033 3.967 15 H 0.125 0.875 16 C -0.044 4.044 17 N -0.339 5.339 18 C 0.317 3.683 19 O -0.426 6.426 20 C -0.142 4.142 21 C -0.023 4.023 22 C -0.119 4.119 23 C -0.099 4.099 24 C -0.105 4.105 25 Cl -0.028 7.028 26 C 0.089 3.911 27 F -0.108 7.108 28 C -0.148 4.148 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.158 0.842 39 H 0.161 0.839 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.537 -14.435 -9.992 17.623 hybrid contribution 0.258 0.684 -0.172 0.751 sum -1.279 -13.751 -10.165 17.148 Atomic orbital electron populations 1.69887 1.04954 1.25481 1.56307 1.24808 0.95672 0.97701 1.02037 0.86204 0.78457 0.83185 0.77894 1.21172 1.21626 1.21103 1.19008 0.90341 0.82161 1.44570 0.90231 1.45737 1.01207 0.99168 1.86355 1.22269 0.84280 0.86936 1.01310 1.24367 0.97765 0.97761 0.80619 0.87060 1.24161 0.96789 0.98877 0.99303 1.23119 0.96526 0.86274 0.90738 0.87530 1.23312 0.79796 0.98926 1.02321 1.49224 1.09421 1.59841 1.15456 1.19829 0.86215 0.77791 0.84491 1.90708 1.15210 1.56369 1.80340 1.20704 0.96941 1.03140 0.93414 1.19290 0.96008 0.92252 0.94799 1.21103 0.95037 1.00513 0.95285 1.20929 0.97416 0.92194 0.99330 1.20961 0.96126 0.94456 0.98934 1.98376 1.50786 1.86579 1.67096 1.17294 0.97275 0.78042 0.98488 1.91527 1.92516 1.31360 1.95373 1.20935 0.98013 0.96135 0.99685 0.93496 0.93273 0.92413 0.89781 0.91657 0.92719 0.90981 0.87784 0.87328 0.84208 0.83885 0.83963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.03 10.57 55.49 0.59 -25.45 16 2 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 3 Si 0.91 21.09 29.55 -169.99 -5.02 16.07 16 4 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.23 -5.95 10.38 -15.06 -0.16 -6.11 16 8 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.60 -13.71 3.07 -154.66 -0.47 -14.19 16 10 C 0.18 4.05 4.88 -0.50 0.00 4.05 16 11 C 0.10 1.78 5.18 -62.54 -0.32 1.46 16 12 H 0.11 2.02 8.06 -51.93 -0.42 1.60 16 13 C -0.15 -2.41 6.82 -22.31 -0.15 -2.56 16 14 C 0.14 2.45 5.52 -62.58 -0.35 2.10 16 15 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 16 C 0.08 1.24 6.01 -1.69 -0.01 1.23 16 17 N -0.61 -10.16 2.94 -156.79 -0.46 -10.62 16 18 C 0.53 8.64 7.89 -10.99 -0.09 8.55 16 19 O -0.55 -10.89 16.38 5.56 0.09 -10.80 16 20 C -0.10 -1.19 5.11 -29.04 -0.15 -1.34 16 21 C -0.02 -0.27 4.37 -104.63 -0.46 -0.73 16 22 C -0.10 -1.14 9.70 -39.58 -0.38 -1.53 16 23 C -0.08 -0.86 9.83 -39.56 -0.39 -1.25 16 24 C -0.08 -0.91 6.33 -39.43 -0.25 -1.16 16 25 Cl -0.06 -0.63 28.62 -51.86 -1.48 -2.11 16 26 C 0.11 1.35 7.28 -39.39 -0.29 1.06 16 27 F -0.13 -1.65 16.84 2.25 0.04 -1.61 16 28 C -0.13 -1.51 9.68 -39.52 -0.38 -1.89 16 29 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.05 1.30 7.73 -51.93 -0.40 0.89 16 31 H 0.06 1.47 7.47 -51.93 -0.39 1.09 16 32 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.10 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.11 1.13 8.08 -51.93 -0.42 0.71 16 38 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 354.20 15.07 5.34 5.34 Total: -1.00 -31.02 354.20 -9.84 -40.86 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -4.98 Total: 0.87 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -3.47 Total: 1.65 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.35 Total: -50.26 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.48 Total: -2.11 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.02 -9.84 -40.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032648634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.394 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds