Wall clock time and date at job start Tue Mar 31 2020 20:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 119.99944 * 2 1 4 4 H 1.48500 * 109.46900 * 240.00011 * 3 2 1 5 5 H 1.48500 * 109.46912 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46967 * 119.99987 * 3 2 1 7 7 C 1.38812 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00217 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.49960 * 126.74342 * 0.35491 * 9 7 2 11 11 C 1.56015 * 104.10004 * 182.13392 * 10 9 7 12 12 H 1.09000 * 116.24346 * 159.12023 * 11 10 9 13 13 C 1.57082 * 100.41925 * 32.49192 * 11 10 9 14 14 C 1.49284 * 126.94610 * 180.02562 * 9 7 2 15 15 H 1.09004 * 116.15484 * 16.70282 * 14 9 7 16 16 C 1.55997 * 104.31646 * 246.61472 * 14 9 7 17 17 N 1.47864 * 105.11802 * 289.11316 * 16 14 9 18 18 C 1.34774 * 126.94775 * 181.87835 * 17 16 14 19 19 O 1.21280 * 120.00178 * 179.68568 * 18 17 16 20 20 C 1.50694 * 119.99634 * 359.68271 * 18 17 16 21 21 C 1.50705 * 109.47169 * 180.02562 * 20 18 17 22 22 C 1.38264 * 119.97373 * 89.99517 * 21 20 18 23 23 C 1.38218 * 120.06094 * 180.02562 * 22 21 20 24 24 C 1.38323 * 120.01099 * 359.97438 * 23 22 21 25 25 Cl 1.73602 * 120.02523 * 179.97438 * 24 23 22 26 26 C 1.38555 * 119.95145 * 359.97438 * 24 23 22 27 27 F 1.35098 * 120.02853 * 179.72821 * 26 24 23 28 28 C 1.38194 * 119.97326 * 269.97887 * 21 20 18 29 29 H 0.97006 * 120.00229 * 0.02562 * 1 2 3 30 30 H 1.09001 * 111.27245 * 63.32139 * 10 9 7 31 31 H 1.09001 * 110.31855 * 300.48399 * 10 9 7 32 32 H 1.08995 * 112.36638 * 64.05875 * 13 11 10 33 33 H 1.08999 * 112.36755 * 191.50587 * 13 11 10 34 34 H 1.09000 * 110.41379 * 170.14705 * 16 14 9 35 35 H 1.08998 * 110.20414 * 47.96896 * 16 14 9 36 36 H 1.08995 * 109.47546 * 60.00147 * 20 18 17 37 37 H 1.09005 * 109.47663 * 299.99838 * 20 18 17 38 38 H 1.07994 * 119.97199 * 0.02562 * 22 21 20 39 39 H 1.07992 * 119.99809 * 180.02562 * 23 22 21 40 40 H 1.08000 * 120.00964 * 0.02562 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1636 -2.5642 -0.0074 11 6 -0.3637 -4.1104 0.0523 12 1 -1.3347 -4.4574 0.4058 13 6 0.8843 -4.5253 0.9112 14 6 1.9102 -3.7617 -0.0005 15 1 2.9607 -3.8368 0.2807 16 6 1.5093 -4.3516 -1.3879 17 7 0.0515 -4.5835 -1.3016 18 6 -0.7412 -5.1192 -2.2509 19 8 -1.9279 -5.2577 -2.0428 20 6 -0.1528 -5.5462 -3.5709 21 6 -1.2419 -6.1077 -4.4482 22 6 -1.9463 -5.2721 -5.2952 23 6 -2.9459 -5.7851 -6.1003 24 6 -3.2422 -7.1356 -6.0596 25 17 -4.4980 -7.7801 -7.0701 26 6 -2.5359 -7.9735 -5.2118 27 9 -2.8277 -9.2919 -5.1668 28 6 -1.5356 -7.4574 -4.4058 29 1 -0.4851 0.8401 -0.0004 30 1 -0.6054 -2.1604 -0.9184 31 1 -0.6048 -2.0912 0.8699 32 1 0.8458 -4.1194 1.9220 33 1 1.0495 -5.6027 0.9092 34 1 2.0320 -5.2911 -1.5670 35 1 1.7325 -3.6365 -2.1797 36 1 0.6065 -6.3093 -3.4005 37 1 0.3011 -4.6853 -4.0619 38 1 -1.7152 -4.2176 -5.3278 39 1 -3.4951 -5.1316 -6.7617 40 1 -0.9850 -8.1094 -3.7438 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032648634.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:14 Heat of formation + Delta-G solvation = -18.152058 kcal Electronic energy + Delta-G solvation = -26496.731358 eV Core-core repulsion = 22445.876116 eV Total energy + Delta-G solvation = -4050.855242 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.04924 -41.57825 -40.42624 -39.04944 -37.62436 -35.36874 -33.90216 -33.04638 -31.76453 -30.79710 -30.17260 -28.50703 -26.90651 -25.18352 -24.09566 -23.35408 -21.85354 -21.36688 -19.97123 -18.86984 -18.50730 -17.90052 -17.83746 -17.48002 -17.23212 -16.84160 -16.43997 -16.19691 -15.65513 -15.26340 -14.94345 -14.90560 -14.66124 -14.32507 -14.01833 -13.76035 -13.56633 -13.38654 -13.25548 -13.05039 -12.81729 -12.76710 -12.66571 -12.50657 -12.41598 -12.26344 -12.11175 -12.03965 -11.98949 -11.84826 -11.46166 -10.95897 -10.68643 -10.03086 -9.67576 -9.48397 -8.87820 -7.81583 -5.16407 -0.16399 0.04456 0.91662 1.49042 1.51103 1.57219 1.69190 1.97957 2.44417 2.51028 2.97600 3.35539 3.39690 3.46654 3.62006 3.69145 3.91700 3.95256 4.00888 4.09106 4.12240 4.26122 4.35293 4.46912 4.63758 4.67011 4.73383 4.79268 4.87832 4.90394 4.97912 5.00793 5.05867 5.18254 5.29821 5.34540 5.48907 5.55815 5.63350 5.68247 6.10364 6.73384 7.03094 7.21999 7.73163 8.44681 9.29615 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.020594 B = 0.002533 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.323868 B =11050.441008 C =11790.932118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.072 4.072 3 Si 0.974 3.026 4 H -0.276 1.276 5 H -0.305 1.305 6 H -0.276 1.276 7 C -0.227 4.227 8 H 0.095 0.905 9 N -0.620 5.620 10 C 0.189 3.811 11 C 0.100 3.900 12 H 0.107 0.893 13 C -0.131 4.131 14 C 0.135 3.865 15 H 0.135 0.865 16 C 0.090 3.910 17 N -0.609 5.609 18 C 0.523 3.477 19 O -0.590 6.590 20 C -0.090 4.090 21 C -0.034 4.034 22 C -0.108 4.108 23 C -0.080 4.080 24 C -0.086 4.086 25 Cl -0.054 7.054 26 C 0.092 3.908 27 F -0.135 7.135 28 C -0.129 4.129 29 H 0.243 0.757 30 H 0.001 0.999 31 H 0.016 0.984 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.059 0.941 36 H 0.140 0.860 37 H 0.123 0.877 38 H 0.149 0.851 39 H 0.163 0.837 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.829 -16.389 -10.610 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.264 4.264 3 Si 0.803 3.197 4 H -0.202 1.202 5 H -0.232 1.232 6 H -0.202 1.202 7 C -0.356 4.356 8 H 0.113 0.887 9 N -0.345 5.345 10 C 0.063 3.937 11 C -0.004 4.004 12 H 0.125 0.875 13 C -0.170 4.170 14 C 0.028 3.972 15 H 0.152 0.848 16 C -0.034 4.034 17 N -0.342 5.342 18 C 0.314 3.686 19 O -0.471 6.471 20 C -0.129 4.129 21 C -0.035 4.035 22 C -0.127 4.127 23 C -0.099 4.099 24 C -0.113 4.113 25 Cl -0.026 7.026 26 C 0.072 3.928 27 F -0.114 7.114 28 C -0.148 4.148 29 H 0.052 0.948 30 H 0.020 0.980 31 H 0.034 0.966 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.077 0.923 36 H 0.158 0.842 37 H 0.141 0.859 38 H 0.167 0.833 39 H 0.181 0.819 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.028 -16.351 -10.671 19.552 hybrid contribution -0.536 1.220 0.033 1.333 sum 0.492 -15.130 -10.638 18.503 Atomic orbital electron populations 1.70135 1.06543 1.25081 1.58953 1.25611 0.96338 1.01038 1.03446 0.85208 0.76996 0.79147 0.78318 1.20153 1.23227 1.20202 1.19503 0.91214 0.83239 1.41636 0.88699 1.45994 1.01273 1.01012 1.86229 1.21846 0.84622 0.90123 0.97102 1.24113 0.99131 0.94191 0.82964 0.87477 1.24060 0.94072 1.00855 0.98000 1.23570 0.98070 0.83090 0.92429 0.84754 1.23238 0.78909 1.01069 1.00139 1.49305 1.10351 1.59704 1.14868 1.20679 0.85666 0.76756 0.85530 1.90691 1.17198 1.58032 1.81224 1.20712 0.97262 1.04669 0.90285 1.19419 0.96500 0.92432 0.95146 1.21349 0.95014 1.01062 0.95236 1.21167 0.97278 0.92080 0.99363 1.21142 0.96260 0.94917 0.99030 1.98373 1.50629 1.86596 1.66952 1.17501 0.98037 0.77969 0.99267 1.91508 1.92645 1.31743 1.95484 1.21132 0.97780 0.96391 0.99502 0.94830 0.98032 0.96609 0.90648 0.87799 0.87330 0.92253 0.84186 0.85862 0.83326 0.81948 0.82323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.97 10.57 21.65 0.23 -56.74 16 2 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 3 Si 0.97 44.02 29.55 68.60 2.03 46.05 16 4 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.31 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.23 -11.53 10.38 84.03 0.87 -10.66 16 8 H 0.10 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.62 -28.13 3.07 -643.22 -1.97 -30.11 16 10 C 0.19 9.01 4.88 86.75 0.42 9.43 16 11 C 0.10 3.61 5.18 46.92 0.24 3.85 16 12 H 0.11 3.95 8.06 -2.39 -0.02 3.93 16 13 C -0.13 -3.78 6.82 33.46 0.23 -3.55 16 14 C 0.13 4.19 5.52 46.92 0.26 4.45 16 15 H 0.13 3.47 8.14 -2.38 -0.02 3.45 16 16 C 0.09 2.38 6.01 87.16 0.52 2.91 16 17 N -0.61 -19.16 2.94 -768.35 -2.26 -21.41 16 18 C 0.52 16.12 7.89 87.66 0.69 16.81 16 19 O -0.59 -23.21 16.38 -3.03 -0.05 -23.26 16 20 C -0.09 -1.80 5.11 29.10 0.15 -1.65 16 21 C -0.03 -0.74 4.37 -19.87 -0.09 -0.83 16 22 C -0.11 -2.29 9.70 22.27 0.22 -2.07 16 23 C -0.08 -1.62 9.83 22.29 0.22 -1.40 16 24 C -0.09 -1.94 6.33 22.37 0.14 -1.80 16 25 Cl -0.05 -1.15 28.62 -2.72 -0.08 -1.23 16 26 C 0.09 2.18 7.28 22.40 0.16 2.34 16 27 F -0.14 -3.33 16.84 44.97 0.76 -2.57 16 28 C -0.13 -2.78 9.68 22.31 0.22 -2.56 16 29 H 0.24 14.35 8.31 -92.70 -0.77 13.58 16 30 H 0.00 0.08 7.73 -2.39 -0.02 0.06 16 31 H 0.02 0.86 7.47 -2.39 -0.02 0.85 16 32 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.10 2.29 8.14 -2.39 -0.02 2.28 16 34 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.14 1.79 8.08 -2.39 -0.02 1.78 16 37 H 0.12 2.15 8.08 -2.38 -0.02 2.13 16 38 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 39 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 40 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -71.69 354.20 4.44 -67.25 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 1.07 Total: 10.22 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 4.72 Total: 11.81 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -4.00 Total: -108.26 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.05 Total: -23.26 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.76 Total: -2.57 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -71.69 4.44 -67.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032648634.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.093 kcal (2) G-P(sol) polarization free energy of solvation -71.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds