Wall clock time and date at job start Tue Mar 31 2020 20:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 120.00257 * 2 1 4 4 H 1.48498 * 109.47103 * 270.00157 * 3 2 1 5 5 H 1.48508 * 109.46939 * 29.99700 * 3 2 1 6 6 H 1.48493 * 109.47177 * 149.99815 * 3 2 1 7 7 C 1.38810 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00133 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00112 * 0.02562 * 7 2 1 10 10 C 1.49954 * 126.74739 * 0.35232 * 9 7 2 11 11 C 1.56014 * 104.10554 * 182.13290 * 10 9 7 12 12 H 1.08994 * 116.25261 * 159.11384 * 11 10 9 13 13 C 1.57084 * 100.41588 * 32.48699 * 11 10 9 14 14 C 1.49292 * 126.94310 * 179.97438 * 9 7 2 15 15 H 1.09001 * 116.78807 * 16.30552 * 14 9 7 16 16 C 1.56003 * 104.31692 * 246.61482 * 14 9 7 17 17 N 1.47871 * 105.11536 * 289.11473 * 16 14 9 18 18 C 1.34779 * 126.94590 * 181.87507 * 17 16 14 19 19 O 1.21270 * 119.99808 * 179.68339 * 18 17 16 20 20 C 1.50700 * 119.99840 * 359.68388 * 18 17 16 21 21 C 1.50699 * 109.47268 * 179.97438 * 20 18 17 22 22 C 1.38231 * 120.00580 * 265.00152 * 21 20 18 23 23 C 1.38227 * 120.04841 * 179.97438 * 22 21 20 24 24 C 1.38265 * 120.05801 * 0.02562 * 23 22 21 25 25 C 1.38275 * 120.01148 * 0.02562 * 24 23 22 26 26 Cl 1.73609 * 120.02121 * 180.02562 * 25 24 23 27 27 C 1.38408 * 120.00223 * 84.99848 * 21 20 18 28 28 F 1.35101 * 120.03205 * 0.04494 * 27 21 20 29 29 H 0.96998 * 119.99427 * 0.02562 * 1 2 3 30 30 H 1.09007 * 111.27614 * 63.31545 * 10 9 7 31 31 H 1.09005 * 110.31381 * 300.48006 * 10 9 7 32 32 H 1.08997 * 112.37016 * 64.06672 * 13 11 10 33 33 H 1.08997 * 112.37120 * 191.50547 * 13 11 10 34 34 H 1.08999 * 110.41830 * 170.14598 * 16 14 9 35 35 H 1.09007 * 110.20202 * 47.96865 * 16 14 9 36 36 H 1.08999 * 109.47197 * 59.99587 * 20 18 17 37 37 H 1.09003 * 109.46785 * 300.00118 * 20 18 17 38 38 H 1.07994 * 119.97915 * 359.97438 * 22 21 20 39 39 H 1.07997 * 119.97100 * 180.27411 * 23 22 21 40 40 H 1.07995 * 119.98879 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1636 -2.5642 -0.0074 11 6 -0.3639 -4.1103 0.0529 12 1 -1.3350 -4.4572 0.4059 13 6 0.8836 -4.5250 0.9127 14 6 1.9102 -3.7617 0.0005 15 1 2.9619 -3.8480 0.2737 16 6 1.5092 -4.3517 -1.3869 17 7 0.0513 -4.5835 -1.3005 18 6 -0.7414 -5.1192 -2.2498 19 8 -1.9280 -5.2575 -2.0417 20 6 -0.1531 -5.5461 -3.5699 21 6 -1.2420 -6.1087 -4.4468 22 6 -1.4665 -7.4722 -4.4812 23 6 -2.4654 -7.9891 -5.2847 24 6 -3.2412 -7.1432 -6.0557 25 6 -3.0180 -5.7790 -6.0240 26 17 -3.9923 -4.7167 -6.9915 27 6 -2.0174 -5.2601 -5.2177 28 9 -1.7980 -3.9274 -5.1854 29 1 -0.4849 0.8401 -0.0004 30 1 -0.6048 -2.1607 -0.9188 31 1 -0.6053 -2.0908 0.8695 32 1 0.8444 -4.1187 1.9234 33 1 1.0487 -5.6023 0.9114 34 1 2.0319 -5.2912 -1.5660 35 1 1.7324 -3.6365 -2.1787 36 1 0.6063 -6.3093 -3.3995 37 1 0.3009 -4.6852 -4.0608 38 1 -0.8612 -8.1341 -3.8798 39 1 -2.6427 -9.0542 -5.3073 40 1 -4.0211 -7.5483 -6.6835 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032649612.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:54 Heat of formation + Delta-G solvation = 0.699942 kcal Electronic energy + Delta-G solvation = -27019.844938 eV Core-core repulsion = 22969.807181 eV Total energy + Delta-G solvation = -4050.037758 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.94216 -40.17980 -39.31576 -37.74952 -36.66017 -33.59585 -32.98357 -31.49765 -30.58743 -29.25272 -28.57000 -27.54189 -25.19518 -23.61198 -22.99846 -22.33649 -20.47461 -19.86426 -18.47642 -17.78243 -17.28645 -16.92214 -16.47732 -16.20450 -15.72674 -15.51795 -15.04232 -14.68696 -14.49034 -13.92833 -13.78998 -13.48715 -13.33760 -13.14393 -13.03046 -12.51435 -12.24421 -11.95860 -11.73357 -11.67741 -11.62114 -11.54690 -11.30231 -11.08902 -11.01098 -10.86459 -10.79456 -10.59906 -10.29403 -10.08052 -9.63552 -9.58669 -8.98588 -8.81647 -8.71815 -8.03718 -6.94991 -5.77185 -3.11866 0.80660 0.88122 1.85663 2.98452 3.13412 3.37334 3.41791 3.44770 3.49242 3.97842 4.32573 4.40795 4.55354 4.79941 4.84003 4.89049 5.07509 5.14593 5.16456 5.30270 5.36832 5.54106 5.55084 5.61793 5.67855 5.75320 5.78069 5.86973 5.93195 6.08802 6.14534 6.25481 6.37917 6.44894 6.51102 6.56623 6.66438 7.40328 7.46247 7.69852 8.03549 8.07247 8.53914 9.06381 9.69942 10.38308 11.35227 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.003227 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.120828 B = 8675.427452 C = 9895.364686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.080 0.920 9 N -0.599 5.599 10 C 0.176 3.824 11 C 0.097 3.903 12 H 0.111 0.889 13 C -0.151 4.151 14 C 0.143 3.857 15 H 0.107 0.893 16 C 0.080 3.920 17 N -0.605 5.605 18 C 0.531 3.469 19 O -0.548 6.548 20 C -0.100 4.100 21 C -0.082 4.082 22 C -0.075 4.075 23 C -0.119 4.119 24 C -0.087 4.087 25 C -0.074 4.074 26 Cl -0.053 7.053 27 C 0.128 3.872 28 F -0.120 7.120 29 H 0.254 0.746 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.298 -17.859 -9.891 20.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.361 4.361 8 H 0.098 0.902 9 N -0.324 5.324 10 C 0.052 3.948 11 C -0.005 4.005 12 H 0.129 0.871 13 C -0.191 4.191 14 C 0.034 3.966 15 H 0.125 0.875 16 C -0.045 4.045 17 N -0.339 5.339 18 C 0.319 3.681 19 O -0.427 6.427 20 C -0.140 4.140 21 C -0.083 4.083 22 C -0.094 4.094 23 C -0.138 4.138 24 C -0.106 4.106 25 C -0.102 4.102 26 Cl -0.024 7.024 27 C 0.107 3.893 28 F -0.098 7.098 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.107 -17.497 -9.928 20.227 hybrid contribution 0.350 1.381 -0.242 1.445 sum -1.758 -16.116 -10.170 19.138 Atomic orbital electron populations 1.69906 1.04963 1.25352 1.56311 1.24814 0.95665 0.97709 1.02029 0.86125 0.78552 0.83502 0.77572 1.21613 1.21678 1.20644 1.19048 0.90354 0.82157 1.44521 0.90182 1.45731 1.01209 0.99152 1.86315 1.22275 0.84241 0.86966 1.01347 1.24351 0.97739 0.97787 0.80613 0.87081 1.24160 0.96804 0.98822 0.99267 1.23114 0.96476 0.86303 0.90692 0.87544 1.23351 0.79802 0.98911 1.02437 1.49190 1.09422 1.59830 1.15446 1.19796 0.86198 0.77730 0.84425 1.90688 1.15189 1.56517 1.80307 1.20590 0.96766 1.03231 0.93364 1.19387 0.97938 0.93571 0.97434 1.20999 0.97471 0.93429 0.97453 1.21095 0.95660 1.00232 0.96778 1.20934 0.99946 0.90093 0.99611 1.20949 0.96876 0.92570 0.99760 1.98385 1.69329 1.65393 1.69340 1.17239 0.95999 0.78246 0.97791 1.91576 1.93570 1.29667 1.94988 0.93549 0.93245 0.92389 0.89770 0.91677 0.92744 0.91030 0.87455 0.87547 0.84488 0.84382 0.84140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.88 10.57 55.49 0.59 -26.30 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 3 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.23 -6.15 10.38 -15.06 -0.16 -6.30 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -14.24 3.07 -154.62 -0.47 -14.72 16 10 C 0.18 4.22 4.87 -0.50 0.00 4.22 16 11 C 0.10 1.87 5.18 -62.56 -0.32 1.55 16 12 H 0.11 2.10 8.06 -51.93 -0.42 1.68 16 13 C -0.15 -2.48 6.82 -22.28 -0.15 -2.63 16 14 C 0.14 2.56 5.52 -62.54 -0.35 2.22 16 15 H 0.11 1.69 8.14 -51.93 -0.42 1.26 16 16 C 0.08 1.30 6.01 -1.68 -0.01 1.29 16 17 N -0.61 -10.87 2.94 -156.81 -0.46 -11.34 16 18 C 0.53 9.46 7.89 -10.98 -0.09 9.37 16 19 O -0.55 -11.61 16.38 5.57 0.09 -11.52 16 20 C -0.10 -1.34 4.89 -29.04 -0.14 -1.48 16 21 C -0.08 -1.09 4.38 -104.56 -0.46 -1.54 16 22 C -0.08 -0.78 9.68 -39.59 -0.38 -1.16 16 23 C -0.12 -1.05 10.04 -39.58 -0.40 -1.45 16 24 C -0.09 -0.86 9.83 -39.56 -0.39 -1.25 16 25 C -0.07 -0.95 6.33 -39.44 -0.25 -1.20 16 26 Cl -0.05 -0.67 28.62 -51.86 -1.48 -2.16 16 27 C 0.13 1.90 7.22 -39.39 -0.28 1.62 16 28 F -0.12 -2.07 16.14 2.25 0.04 -2.04 16 29 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.05 1.38 7.73 -51.92 -0.40 0.98 16 31 H 0.06 1.53 7.47 -51.93 -0.39 1.14 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.11 1.06 8.05 -51.93 -0.42 0.64 16 37 H 0.11 1.44 7.79 -51.93 -0.40 1.04 16 38 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 39 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 353.24 15.07 5.32 5.32 Total: -1.00 -32.93 353.24 -9.84 -42.77 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -4.96 Total: 0.28 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -3.48 Total: 3.00 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.35 Total: -52.35 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.48 Total: -2.16 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.93 -9.84 -42.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032649612.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.467 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds