Wall clock time and date at job start Tue Mar 31 2020 20:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 120.00257 * 2 1 4 4 H 1.48498 * 109.47103 * 270.00157 * 3 2 1 5 5 H 1.48508 * 109.46939 * 29.99700 * 3 2 1 6 6 H 1.48493 * 109.47177 * 149.99815 * 3 2 1 7 7 C 1.38810 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00133 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00112 * 0.02562 * 7 2 1 10 10 C 1.49954 * 126.74739 * 0.35232 * 9 7 2 11 11 C 1.56014 * 104.10554 * 182.13290 * 10 9 7 12 12 H 1.08994 * 116.25261 * 159.11384 * 11 10 9 13 13 C 1.57084 * 100.41588 * 32.48699 * 11 10 9 14 14 C 1.49292 * 126.94310 * 179.97438 * 9 7 2 15 15 H 1.09001 * 116.78807 * 16.30552 * 14 9 7 16 16 C 1.56003 * 104.31692 * 246.61482 * 14 9 7 17 17 N 1.47871 * 105.11536 * 289.11473 * 16 14 9 18 18 C 1.34779 * 126.94590 * 181.87507 * 17 16 14 19 19 O 1.21270 * 119.99808 * 179.68339 * 18 17 16 20 20 C 1.50700 * 119.99840 * 359.68388 * 18 17 16 21 21 C 1.50699 * 109.47268 * 179.97438 * 20 18 17 22 22 C 1.38231 * 120.00580 * 265.00152 * 21 20 18 23 23 C 1.38227 * 120.04841 * 179.97438 * 22 21 20 24 24 C 1.38265 * 120.05801 * 0.02562 * 23 22 21 25 25 C 1.38275 * 120.01148 * 0.02562 * 24 23 22 26 26 Cl 1.73609 * 120.02121 * 180.02562 * 25 24 23 27 27 C 1.38408 * 120.00223 * 84.99848 * 21 20 18 28 28 F 1.35101 * 120.03205 * 0.04494 * 27 21 20 29 29 H 0.96998 * 119.99427 * 0.02562 * 1 2 3 30 30 H 1.09007 * 111.27614 * 63.31545 * 10 9 7 31 31 H 1.09005 * 110.31381 * 300.48006 * 10 9 7 32 32 H 1.08997 * 112.37016 * 64.06672 * 13 11 10 33 33 H 1.08997 * 112.37120 * 191.50547 * 13 11 10 34 34 H 1.08999 * 110.41830 * 170.14598 * 16 14 9 35 35 H 1.09007 * 110.20202 * 47.96865 * 16 14 9 36 36 H 1.08999 * 109.47197 * 59.99587 * 20 18 17 37 37 H 1.09003 * 109.46785 * 300.00118 * 20 18 17 38 38 H 1.07994 * 119.97915 * 359.97438 * 22 21 20 39 39 H 1.07997 * 119.97100 * 180.27411 * 23 22 21 40 40 H 1.07995 * 119.98879 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1636 -2.5642 -0.0074 11 6 -0.3639 -4.1103 0.0529 12 1 -1.3350 -4.4572 0.4059 13 6 0.8836 -4.5250 0.9127 14 6 1.9102 -3.7617 0.0005 15 1 2.9619 -3.8480 0.2737 16 6 1.5092 -4.3517 -1.3869 17 7 0.0513 -4.5835 -1.3005 18 6 -0.7414 -5.1192 -2.2498 19 8 -1.9280 -5.2575 -2.0417 20 6 -0.1531 -5.5461 -3.5699 21 6 -1.2420 -6.1087 -4.4468 22 6 -1.4665 -7.4722 -4.4812 23 6 -2.4654 -7.9891 -5.2847 24 6 -3.2412 -7.1432 -6.0557 25 6 -3.0180 -5.7790 -6.0240 26 17 -3.9923 -4.7167 -6.9915 27 6 -2.0174 -5.2601 -5.2177 28 9 -1.7980 -3.9274 -5.1854 29 1 -0.4849 0.8401 -0.0004 30 1 -0.6048 -2.1607 -0.9188 31 1 -0.6053 -2.0908 0.8695 32 1 0.8444 -4.1187 1.9234 33 1 1.0487 -5.6023 0.9114 34 1 2.0319 -5.2912 -1.5660 35 1 1.7324 -3.6365 -2.1787 36 1 0.6063 -6.3093 -3.3995 37 1 0.3009 -4.6852 -4.0608 38 1 -0.8612 -8.1341 -3.8798 39 1 -2.6427 -9.0542 -5.3073 40 1 -4.0211 -7.5483 -6.6835 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032649612.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:53 Heat of formation + Delta-G solvation = -18.764221 kcal Electronic energy + Delta-G solvation = -27020.688968 eV Core-core repulsion = 22969.807181 eV Total energy + Delta-G solvation = -4050.881787 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.09249 -41.58710 -40.32712 -39.12597 -37.61692 -35.40898 -34.07323 -33.12521 -31.43262 -30.85875 -30.22034 -28.62635 -26.94660 -25.23167 -23.87655 -23.44420 -21.89947 -21.40414 -20.01459 -18.93207 -18.70917 -17.99512 -17.91316 -17.42667 -17.00578 -16.84896 -16.40699 -16.16942 -15.65723 -15.48038 -14.97112 -14.91154 -14.51477 -14.33067 -14.04113 -13.80140 -13.64366 -13.45151 -13.27680 -13.09537 -12.84037 -12.72358 -12.70978 -12.50149 -12.42835 -12.30791 -12.12015 -12.04152 -11.97804 -11.88560 -11.49715 -11.02994 -10.74332 -9.87687 -9.72752 -9.53392 -8.91890 -7.84970 -5.20376 -0.04332 0.00147 0.93617 1.45473 1.47064 1.55656 1.61770 1.98692 2.47460 2.48147 3.07033 3.31712 3.36198 3.38301 3.63744 3.78223 3.87685 3.91882 4.01000 4.05020 4.15917 4.23030 4.27385 4.43807 4.59607 4.66883 4.71203 4.83573 4.90867 4.93060 4.95534 5.04119 5.15528 5.16724 5.27307 5.28137 5.45286 5.51521 5.63769 5.71347 6.06722 6.67317 6.98982 7.15616 7.69617 8.41120 9.26627 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.003227 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.120828 B = 8675.427452 C = 9895.364686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.074 4.074 3 Si 0.976 3.024 4 H -0.292 1.292 5 H -0.303 1.303 6 H -0.259 1.259 7 C -0.227 4.227 8 H 0.097 0.903 9 N -0.620 5.620 10 C 0.188 3.812 11 C 0.099 3.901 12 H 0.109 0.891 13 C -0.126 4.126 14 C 0.136 3.864 15 H 0.139 0.861 16 C 0.088 3.912 17 N -0.610 5.610 18 C 0.524 3.476 19 O -0.589 6.589 20 C -0.089 4.089 21 C -0.101 4.101 22 C -0.071 4.071 23 C -0.104 4.104 24 C -0.084 4.084 25 C -0.091 4.091 26 Cl -0.064 7.064 27 C 0.083 3.917 28 F -0.149 7.149 29 H 0.242 0.758 30 H -0.007 1.007 31 H 0.018 0.982 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.049 0.951 36 H 0.154 0.846 37 H 0.098 0.902 38 H 0.171 0.829 39 H 0.182 0.818 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.080 -22.156 -10.126 24.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.267 4.267 3 Si 0.805 3.195 4 H -0.220 1.220 5 H -0.230 1.230 6 H -0.184 1.184 7 C -0.356 4.356 8 H 0.115 0.885 9 N -0.345 5.345 10 C 0.062 3.938 11 C -0.004 4.004 12 H 0.127 0.873 13 C -0.165 4.165 14 C 0.029 3.971 15 H 0.156 0.844 16 C -0.036 4.036 17 N -0.342 5.342 18 C 0.314 3.686 19 O -0.471 6.471 20 C -0.128 4.128 21 C -0.102 4.102 22 C -0.089 4.089 23 C -0.122 4.122 24 C -0.102 4.102 25 C -0.118 4.118 26 Cl -0.035 7.035 27 C 0.063 3.937 28 F -0.128 7.128 29 H 0.051 0.949 30 H 0.011 0.989 31 H 0.036 0.964 32 H 0.096 0.904 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.068 0.932 36 H 0.171 0.829 37 H 0.116 0.884 38 H 0.189 0.811 39 H 0.200 0.800 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.338 -21.845 -10.171 24.099 hybrid contribution -0.415 2.601 -0.193 2.641 sum -0.077 -19.244 -10.364 21.857 Atomic orbital electron populations 1.70166 1.06709 1.25011 1.59037 1.25665 0.96344 1.01250 1.03402 0.85105 0.77931 0.79350 0.77137 1.21974 1.22995 1.18358 1.19573 0.91287 0.83231 1.41516 0.88484 1.46007 1.01213 1.01159 1.86158 1.21839 0.84724 0.90420 0.96812 1.24133 0.99435 0.93962 0.82883 0.87328 1.24051 0.93509 1.01039 0.97884 1.23592 0.98313 0.82969 0.92177 0.84356 1.23293 0.78950 1.01081 1.00297 1.49290 1.10397 1.59583 1.14971 1.20630 0.85710 0.76850 0.85434 1.90660 1.17055 1.58195 1.81153 1.20593 0.97653 1.04230 0.90374 1.19583 0.98165 0.94844 0.97612 1.21465 0.97803 0.92312 0.97342 1.21642 0.93822 1.02129 0.94595 1.21384 1.00420 0.88765 0.99628 1.21223 0.96818 0.93759 1.00029 1.98372 1.69466 1.66126 1.69536 1.17778 0.98173 0.77473 1.00246 1.91490 1.94013 1.31830 1.95448 0.94889 0.98873 0.96379 0.90353 0.87335 0.86908 0.93212 0.82877 0.88406 0.81149 0.80022 0.81419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.87 10.57 21.65 0.23 -59.64 16 2 C -0.07 -4.23 5.49 84.86 0.47 -3.77 16 3 Si 0.98 45.92 29.55 68.60 2.03 47.95 16 4 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 5 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 7 C -0.23 -12.07 10.38 84.03 0.87 -11.20 16 8 H 0.10 4.72 7.83 -2.91 -0.02 4.69 16 9 N -0.62 -29.72 3.07 -643.11 -1.97 -31.70 16 10 C 0.19 9.53 4.87 86.75 0.42 9.96 16 11 C 0.10 3.82 5.18 46.93 0.24 4.06 16 12 H 0.11 4.20 8.06 -2.39 -0.02 4.19 16 13 C -0.13 -3.76 6.82 33.48 0.23 -3.53 16 14 C 0.14 4.46 5.52 46.94 0.26 4.72 16 15 H 0.14 3.71 8.14 -2.39 -0.02 3.69 16 16 C 0.09 2.57 6.01 87.16 0.52 3.10 16 17 N -0.61 -21.17 2.94 -768.42 -2.26 -23.43 16 18 C 0.52 18.28 7.89 87.66 0.69 18.97 16 19 O -0.59 -25.28 16.38 -3.00 -0.05 -25.33 16 20 C -0.09 -2.23 4.89 29.10 0.14 -2.08 16 21 C -0.10 -2.52 4.38 -19.83 -0.09 -2.61 16 22 C -0.07 -1.19 9.68 22.27 0.22 -0.98 16 23 C -0.10 -1.38 10.04 22.27 0.22 -1.16 16 24 C -0.08 -1.44 9.83 22.28 0.22 -1.22 16 25 C -0.09 -2.32 6.33 22.36 0.14 -2.18 16 26 Cl -0.06 -1.65 28.62 -2.72 -0.08 -1.73 16 27 C 0.08 2.53 7.22 22.39 0.16 2.69 16 28 F -0.15 -5.57 16.14 44.97 0.73 -4.84 16 29 H 0.24 14.96 8.31 -92.71 -0.77 14.19 16 30 H -0.01 -0.43 7.73 -2.38 -0.02 -0.45 16 31 H 0.02 1.03 7.47 -2.38 -0.02 1.02 16 32 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.15 2.28 8.05 -2.39 -0.02 2.27 16 37 H 0.10 2.62 7.79 -2.39 -0.02 2.60 16 38 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 39 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16 40 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -80.69 353.24 4.42 -76.28 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 1.07 Total: 7.66 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 4.72 Total: 14.77 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -4.00 Total: -114.77 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.05 Total: -25.33 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.73 Total: -4.84 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.08 Total: -1.73 kcal Total: -80.69 4.42 -76.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032649612.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.513 kcal (2) G-P(sol) polarization free energy of solvation -80.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds