Wall clock time and date at job start Tue Mar 31 2020 20:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39897 * 109.46937 * 2 1 4 4 F 1.39895 * 109.47319 * 239.99601 * 2 1 3 5 5 C 1.50706 * 109.46925 * 119.99700 * 2 1 3 6 6 O 1.21274 * 120.00034 * 25.00322 * 5 2 1 7 7 N 1.34775 * 119.99541 * 204.99872 * 5 2 1 8 8 C 1.46506 * 119.99693 * 179.97438 * 7 5 2 9 9 C 1.53000 * 109.46808 * 180.02562 * 8 7 5 10 10 O 1.42899 * 112.94757 * 53.41168 * 9 8 7 11 11 C 1.53953 * 113.74276 * 281.67411 * 9 8 7 12 12 N 1.47578 * 86.11705 * 222.05111 * 11 9 8 13 13 C 1.34775 * 134.49384 * 204.64559 * 12 11 9 14 14 O 1.21279 * 120.00262 * 180.02562 * 13 12 11 15 15 C 1.50701 * 119.99898 * 359.97438 * 13 12 11 16 16 S 1.80998 * 109.47121 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99970 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99749 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00099 * 179.97438 * 17 16 15 20 20 N 1.31632 * 119.99990 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00026 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47146 * 89.99852 * 21 19 17 23 23 H 1.48497 * 109.47268 * 210.00109 * 21 19 17 24 24 H 1.48506 * 109.47001 * 329.99908 * 21 19 17 25 25 C 1.47589 * 91.01726 * 24.64154 * 12 11 9 26 26 H 1.09004 * 109.47059 * 299.99803 * 1 2 3 27 27 H 1.08992 * 109.47060 * 60.00287 * 1 2 3 28 28 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 29 29 H 0.97000 * 120.00190 * 0.02562 * 7 5 2 30 30 H 1.08999 * 109.46950 * 300.00287 * 8 7 5 31 31 H 1.09002 * 109.46511 * 60.00720 * 8 7 5 32 32 H 0.96702 * 114.00018 * 309.66563 * 10 9 8 33 33 H 1.08998 * 113.76503 * 336.35592 * 11 9 8 34 34 H 1.08999 * 113.76229 * 107.74757 * 11 9 8 35 35 H 1.09006 * 109.47151 * 300.00815 * 15 13 12 36 36 H 1.09001 * 109.46791 * 60.00396 * 15 13 12 37 37 H 0.96997 * 119.99924 * 180.02562 * 20 19 17 38 38 H 1.08997 * 113.76700 * 221.05739 * 25 12 11 39 39 H 1.08994 * 113.87030 * 89.67027 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0323 -0.7104 1.2306 6 8 1.3370 -1.5393 1.7785 7 7 3.2543 -0.4245 1.7220 8 6 3.7424 -1.1147 2.9186 9 6 5.1448 -0.6088 3.2626 10 8 5.2111 0.8140 3.3781 11 6 6.2549 -1.2142 2.3843 12 7 7.0388 -1.3289 3.6294 13 6 8.3546 -1.3852 3.9154 14 8 8.7213 -1.4823 5.0673 15 6 9.3704 -1.3285 2.8035 16 16 11.0368 -1.4258 3.5032 17 6 11.9942 -1.3393 2.0265 18 1 11.5028 -1.2531 1.0686 19 6 13.3799 -1.3807 2.0943 20 7 13.9788 -1.4851 3.2618 21 14 14.3949 -1.2882 0.5289 22 1 14.7003 0.1319 0.2201 23 1 15.6629 -2.0379 0.7160 24 1 13.6281 -1.8851 -0.5942 25 6 5.8030 -1.3572 4.4359 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.8103 0.2387 1.2839 30 1 3.0698 -0.9153 3.7528 31 1 3.7790 -2.1875 2.7296 32 1 4.8248 1.2878 2.6288 33 1 5.9902 -2.1745 1.9417 34 1 6.6756 -0.5135 1.6632 35 1 9.2124 -2.1660 2.1240 36 1 9.2594 -0.3917 2.2575 37 1 14.9472 -1.5137 3.3093 38 1 5.8632 -0.7708 5.3527 39 1 5.4044 -2.3588 4.5971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041131927.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:55 Heat of formation + Delta-G solvation = -172.616605 kcal Electronic energy + Delta-G solvation = -26547.031595 eV Core-core repulsion = 22060.752750 eV Total energy + Delta-G solvation = -4486.278846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.82679 -47.82044 -41.09753 -40.05663 -38.13053 -35.79194 -35.06370 -32.45028 -32.25092 -30.84270 -29.13413 -26.77721 -26.51232 -25.47580 -24.52669 -21.50085 -21.19548 -19.67504 -19.23971 -18.43191 -17.74730 -17.57855 -17.21036 -16.64774 -16.48698 -15.95699 -15.80164 -15.46626 -15.05059 -14.82334 -14.72281 -14.46922 -14.16561 -14.12796 -13.96693 -13.79962 -13.59978 -13.25830 -13.19610 -13.05359 -12.74943 -12.63215 -12.60235 -12.27008 -11.92965 -11.43407 -11.07966 -11.04163 -10.79566 -10.69361 -10.63632 -10.00029 -9.84585 -9.42998 -9.08715 -8.72191 -8.26791 -6.53019 -6.23560 -3.94726 1.44319 1.85042 2.61078 2.97996 3.02642 3.20661 3.21140 3.27809 3.28178 3.32790 3.51166 3.66460 3.82497 3.89068 4.05323 4.17943 4.40682 4.78103 4.78585 4.90295 4.99337 5.01986 5.08737 5.11560 5.14764 5.23906 5.38913 5.41265 5.43124 5.53386 5.84990 5.91121 6.09695 6.38325 6.98500 7.10424 7.57317 7.69384 8.33047 8.47632 9.21512 10.83887 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.017270 B = 0.002210 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.957412 B =12665.867048 C =13816.781609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.282 3.718 3 F -0.188 7.188 4 F -0.179 7.179 5 C 0.490 3.510 6 O -0.495 6.495 7 N -0.712 5.712 8 C 0.099 3.901 9 C 0.081 3.919 10 O -0.520 6.520 11 C 0.078 3.922 12 N -0.643 5.643 13 C 0.560 3.440 14 O -0.511 6.511 15 C -0.144 4.144 16 S -0.059 6.059 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.920 3.080 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.128 3.872 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.407 0.593 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.376 0.624 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.269 0.731 38 H 0.095 0.905 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.649 3.604 -7.435 30.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.243 3.757 3 F -0.169 7.169 4 F -0.160 7.160 5 C 0.270 3.730 6 O -0.369 6.369 7 N -0.366 5.366 8 C -0.024 4.024 9 C 0.038 3.962 10 O -0.325 6.325 11 C -0.046 4.046 12 N -0.382 5.382 13 C 0.350 3.650 14 O -0.384 6.384 15 C -0.295 4.295 16 S 0.167 5.833 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.746 3.254 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.197 1.197 25 C 0.005 3.995 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.243 0.757 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.225 0.775 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.114 0.886 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -28.843 2.687 -4.600 29.331 hybrid contribution 0.413 0.709 -3.332 3.432 sum -28.430 3.396 -7.933 29.710 Atomic orbital electron populations 1.22663 0.88543 1.06970 1.05980 1.21345 0.96089 0.75597 0.82719 1.93081 1.90441 1.36688 1.96659 1.93120 1.90465 1.80685 1.51732 1.20743 0.82428 0.83990 0.85795 1.90817 1.55630 1.31858 1.58554 1.45891 1.17205 1.43394 1.30102 1.22127 0.94673 0.98240 0.87392 1.23123 0.91389 0.83081 0.98592 1.86700 1.83491 1.14947 1.47357 1.23910 0.89312 1.01274 0.90151 1.49731 1.03755 1.75847 1.08894 1.20015 0.80034 0.74592 0.90387 1.90723 1.78192 1.47840 1.21670 1.23469 1.01325 1.04793 0.99901 1.85424 0.89822 1.96128 1.11895 1.22845 0.93559 1.58668 0.93274 0.90944 1.25001 0.96841 0.94514 0.97258 1.70018 1.10055 1.46513 1.23636 0.86152 0.79139 0.78338 0.81770 1.20240 1.20720 1.19703 1.23055 0.81437 0.99325 0.95718 0.88669 0.88862 0.87929 0.75750 0.89023 0.88775 0.77536 0.88665 0.89138 0.89360 0.89314 0.92141 0.88616 0.88121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.75 8.92 37.16 0.33 -0.42 16 2 C 0.28 1.67 2.47 -27.88 -0.07 1.60 16 3 F -0.19 -1.10 16.51 2.25 0.04 -1.06 16 4 F -0.18 -1.32 17.05 2.25 0.04 -1.28 16 5 C 0.49 3.41 7.23 -10.98 -0.08 3.33 16 6 O -0.50 -4.80 16.09 5.56 0.09 -4.71 16 7 N -0.71 -3.67 5.27 -60.29 -0.32 -3.99 16 8 C 0.10 0.56 5.28 -4.04 -0.02 0.54 16 9 C 0.08 0.60 1.52 -89.69 -0.14 0.47 16 10 O -0.52 -4.36 13.51 -35.23 -0.48 -4.84 16 11 C 0.08 0.69 8.01 -2.97 -0.02 0.66 16 12 N -0.64 -8.94 3.61 -178.23 -0.64 -9.58 16 13 C 0.56 10.94 8.07 -10.99 -0.09 10.85 16 14 O -0.51 -12.09 16.59 5.56 0.09 -12.00 16 15 C -0.14 -2.99 5.91 36.01 0.21 -2.77 16 16 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 17 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 21 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 25 C 0.13 1.31 8.24 -2.97 -0.02 1.29 16 26 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.10 0.44 7.87 -51.93 -0.41 0.03 16 29 H 0.41 1.36 6.86 -40.82 -0.28 1.07 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.51 8.05 -51.93 -0.42 0.09 16 32 H 0.38 1.62 7.61 45.56 0.35 1.97 16 33 H 0.10 0.67 8.03 -51.93 -0.42 0.25 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 36 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 37 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -38.13 363.55 -6.00 -44.13 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -4.10 Total: -1.75 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 0.30 Total: 2.55 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: -0.23 Total: -39.04 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.29 Total: -21.55 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.08 Total: -2.34 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -38.13 -6.00 -44.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041131927.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.483 kcal (2) G-P(sol) polarization free energy of solvation -38.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds