Wall clock time and date at job start Tue Mar 31 2020 20:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 F 1.39897 * 109.46937 * 2 1 4 4 F 1.39895 * 109.47319 * 239.99601 * 2 1 3 5 5 C 1.50706 * 109.46925 * 119.99700 * 2 1 3 6 6 O 1.21274 * 120.00034 * 25.00322 * 5 2 1 7 7 N 1.34775 * 119.99541 * 204.99872 * 5 2 1 8 8 C 1.46506 * 119.99693 * 179.97438 * 7 5 2 9 9 C 1.53000 * 109.46808 * 180.02562 * 8 7 5 10 10 O 1.42899 * 112.94757 * 53.41168 * 9 8 7 11 11 C 1.53953 * 113.74276 * 281.67411 * 9 8 7 12 12 N 1.47578 * 86.11705 * 222.05111 * 11 9 8 13 13 C 1.34775 * 134.49384 * 204.64559 * 12 11 9 14 14 O 1.21279 * 120.00262 * 180.02562 * 13 12 11 15 15 C 1.50701 * 119.99898 * 359.97438 * 13 12 11 16 16 S 1.80998 * 109.47121 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99970 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99749 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00099 * 179.97438 * 17 16 15 20 20 N 1.31632 * 119.99990 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00026 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47146 * 89.99852 * 21 19 17 23 23 H 1.48497 * 109.47268 * 210.00109 * 21 19 17 24 24 H 1.48506 * 109.47001 * 329.99908 * 21 19 17 25 25 C 1.47589 * 91.01726 * 24.64154 * 12 11 9 26 26 H 1.09004 * 109.47059 * 299.99803 * 1 2 3 27 27 H 1.08992 * 109.47060 * 60.00287 * 1 2 3 28 28 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 29 29 H 0.97000 * 120.00190 * 0.02562 * 7 5 2 30 30 H 1.08999 * 109.46950 * 300.00287 * 8 7 5 31 31 H 1.09002 * 109.46511 * 60.00720 * 8 7 5 32 32 H 0.96702 * 114.00018 * 309.66563 * 10 9 8 33 33 H 1.08998 * 113.76503 * 336.35592 * 11 9 8 34 34 H 1.08999 * 113.76229 * 107.74757 * 11 9 8 35 35 H 1.09006 * 109.47151 * 300.00815 * 15 13 12 36 36 H 1.09001 * 109.46791 * 60.00396 * 15 13 12 37 37 H 0.96997 * 119.99924 * 180.02562 * 20 19 17 38 38 H 1.08997 * 113.76700 * 221.05739 * 25 12 11 39 39 H 1.08994 * 113.87030 * 89.67027 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0323 -0.7104 1.2306 6 8 1.3370 -1.5393 1.7785 7 7 3.2543 -0.4245 1.7220 8 6 3.7424 -1.1147 2.9186 9 6 5.1448 -0.6088 3.2626 10 8 5.2111 0.8140 3.3781 11 6 6.2549 -1.2142 2.3843 12 7 7.0388 -1.3289 3.6294 13 6 8.3546 -1.3852 3.9154 14 8 8.7213 -1.4823 5.0673 15 6 9.3704 -1.3285 2.8035 16 16 11.0368 -1.4258 3.5032 17 6 11.9942 -1.3393 2.0265 18 1 11.5028 -1.2531 1.0686 19 6 13.3799 -1.3807 2.0943 20 7 13.9788 -1.4851 3.2618 21 14 14.3949 -1.2882 0.5289 22 1 14.7003 0.1319 0.2201 23 1 15.6629 -2.0379 0.7160 24 1 13.6281 -1.8851 -0.5942 25 6 5.8030 -1.3572 4.4359 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.8103 0.2387 1.2839 30 1 3.0698 -0.9153 3.7528 31 1 3.7790 -2.1875 2.7296 32 1 4.8248 1.2878 2.6288 33 1 5.9902 -2.1745 1.9417 34 1 6.6756 -0.5135 1.6632 35 1 9.2124 -2.1660 2.1240 36 1 9.2594 -0.3917 2.2575 37 1 14.9472 -1.5137 3.3093 38 1 5.8632 -0.7708 5.3527 39 1 5.4044 -2.3588 4.5971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041131927.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:55 Heat of formation + Delta-G solvation = -204.032649 kcal Electronic energy + Delta-G solvation = -26548.393897 eV Core-core repulsion = 22060.752750 eV Total energy + Delta-G solvation = -4487.641148 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.29968 -48.29821 -41.90519 -40.76973 -39.41302 -36.65211 -35.64270 -34.60812 -32.66609 -32.08541 -30.19170 -27.84052 -27.53236 -27.24111 -25.10507 -22.01756 -21.97154 -20.60910 -20.11847 -19.56496 -18.90473 -18.21836 -18.06079 -17.61989 -17.20688 -16.90412 -16.81289 -16.75435 -16.39605 -16.01422 -15.66299 -15.21219 -15.16387 -15.04403 -14.68692 -14.60568 -14.49869 -14.32891 -14.12175 -13.63609 -13.52350 -13.45989 -13.36238 -13.19033 -13.08769 -13.04112 -12.90322 -12.62455 -12.16505 -11.75889 -11.45249 -11.24622 -11.16188 -10.85755 -10.47984 -10.32140 -9.85416 -8.71226 -8.36575 -6.16020 0.91920 1.16674 1.36041 1.41454 1.42077 1.52318 1.54889 1.89353 2.25247 2.55363 2.70421 2.87697 2.97530 3.02455 3.18135 3.36832 3.45070 3.46922 3.59118 3.92941 4.20304 4.31563 4.38697 4.44682 4.46617 4.52196 4.56651 4.59978 4.60954 4.77256 4.81242 4.91031 5.01467 5.39276 5.93662 6.17620 6.46567 6.53190 6.65343 7.04118 7.04674 8.72796 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.017270 B = 0.002210 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.957412 B =12665.867048 C =13816.781609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.283 3.717 3 F -0.187 7.187 4 F -0.188 7.188 5 C 0.490 3.510 6 O -0.525 6.525 7 N -0.702 5.702 8 C 0.110 3.890 9 C 0.106 3.894 10 O -0.540 6.540 11 C 0.073 3.927 12 N -0.644 5.644 13 C 0.555 3.445 14 O -0.569 6.569 15 C -0.117 4.117 16 S -0.153 6.153 17 C -0.545 4.545 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.911 5.911 21 Si 1.001 2.999 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.257 1.257 25 C 0.116 3.884 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.417 0.583 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.395 0.605 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.272 0.728 38 H 0.079 0.921 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.535 3.900 -10.070 33.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.244 3.756 3 F -0.168 7.168 4 F -0.169 7.169 5 C 0.272 3.728 6 O -0.400 6.400 7 N -0.356 5.356 8 C -0.014 4.014 9 C 0.064 3.936 10 O -0.349 6.349 11 C -0.049 4.049 12 N -0.380 5.380 13 C 0.344 3.656 14 O -0.447 6.447 15 C -0.268 4.268 16 S 0.075 5.925 17 C -0.693 4.693 18 H 0.101 0.899 19 C -0.193 4.193 20 N -0.548 5.548 21 Si 0.823 3.177 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.181 1.181 25 C -0.006 4.006 26 H 0.121 0.879 27 H 0.126 0.874 28 H 0.118 0.882 29 H 0.255 0.745 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.246 0.754 33 H 0.142 0.858 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -30.796 3.015 -7.289 31.791 hybrid contribution 0.822 0.663 -2.503 2.717 sum -29.975 3.678 -9.793 31.748 Atomic orbital electron populations 1.22716 0.87198 1.07137 1.07108 1.21413 0.96993 0.75338 0.81888 1.93084 1.90534 1.36545 1.96605 1.93104 1.90671 1.80928 1.52190 1.20896 0.82466 0.83607 0.85881 1.90810 1.56497 1.33208 1.59521 1.45818 1.16837 1.43210 1.29728 1.21996 0.93062 0.98655 0.87681 1.22725 0.91983 0.82660 0.96277 1.86672 1.83950 1.15443 1.48792 1.24364 0.88320 1.03275 0.88926 1.49723 1.02787 1.73129 1.12397 1.19729 0.81888 0.74887 0.89048 1.90692 1.79701 1.51006 1.23344 1.23249 0.97078 1.06250 1.00249 1.85624 0.95749 1.96480 1.14681 1.23173 0.94169 1.58649 0.93309 0.89883 1.26171 0.98221 0.93686 1.01191 1.70188 1.10489 1.47646 1.26444 0.84916 0.77083 0.78753 0.76984 1.19249 1.20260 1.18087 1.23451 0.79825 1.01419 0.95885 0.87920 0.87425 0.88242 0.74544 0.88712 0.87723 0.75402 0.85790 0.88076 0.87487 0.87797 0.91937 0.90289 0.85119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.16 8.92 71.98 0.64 -0.51 16 2 C 0.28 2.75 2.47 29.85 0.07 2.82 16 3 F -0.19 -1.74 16.51 44.97 0.74 -1.00 16 4 F -0.19 -2.40 17.05 44.97 0.77 -1.63 16 5 C 0.49 5.69 7.23 87.66 0.63 6.32 16 6 O -0.52 -9.17 16.09 -3.01 -0.05 -9.22 16 7 N -0.70 -5.11 5.27 -463.05 -2.44 -7.55 16 8 C 0.11 0.88 5.28 86.38 0.46 1.33 16 9 C 0.11 1.28 1.52 -10.13 -0.02 1.27 16 10 O -0.54 -7.74 13.51 -148.98 -2.01 -9.75 16 11 C 0.07 1.06 8.01 86.48 0.69 1.75 16 12 N -0.64 -16.91 3.61 -840.01 -3.03 -19.94 16 13 C 0.56 21.75 8.07 87.66 0.71 22.45 16 14 O -0.57 -27.97 16.59 -3.03 -0.05 -28.02 16 15 C -0.12 -4.81 5.91 71.24 0.42 -4.39 16 16 S -0.15 -8.65 20.57 -56.49 -1.16 -9.81 16 17 C -0.55 -31.33 9.50 67.95 0.65 -30.68 16 18 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.69 5.49 84.86 0.47 1.15 16 20 N -0.91 -56.34 13.22 21.65 0.29 -56.05 16 21 Si 1.00 43.55 29.55 68.60 2.03 45.58 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 25 C 0.12 2.18 8.24 86.48 0.71 2.89 16 26 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.10 0.71 7.87 -2.38 -0.02 0.69 16 29 H 0.42 1.40 6.86 -92.71 -0.64 0.76 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.80 16 31 H 0.10 0.73 8.05 -2.39 -0.02 0.71 16 32 H 0.39 2.22 7.61 -74.06 -0.56 1.66 16 33 H 0.12 1.19 8.03 -2.39 -0.02 1.17 16 34 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 36 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16 37 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 38 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.13 1.68 8.10 -2.39 -0.02 1.66 16 Total: -1.00 -86.35 363.55 0.43 -85.92 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -0.08 Total: 7.07 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 5.44 Total: 4.40 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -5.18 Total: -83.54 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -2.11 Total: -46.99 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 1.51 Total: -2.63 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -86.35 0.43 -85.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041131927.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.111 kcal (2) G-P(sol) polarization free energy of solvation -86.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds