Wall clock time and date at job start Tue Mar 31 2020 21:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86802 * 119.99316 * 2 1 4 4 H 1.48503 * 109.46904 * 240.00082 * 3 2 1 5 5 H 1.48494 * 109.47444 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47116 * 120.00587 * 3 2 1 7 7 C 1.38790 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99837 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00408 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00285 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46968 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00359 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99664 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00325 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47720 * 180.02562 * 14 13 11 16 16 O 1.42902 * 113.27933 * 313.06618 * 15 14 13 17 17 C 1.53495 * 114.20961 * 180.02562 * 15 14 13 18 18 N 1.47065 * 87.98606 * 220.14650 * 17 15 14 19 19 C 1.34781 * 136.05348 * 207.08855 * 18 17 15 20 20 O 1.21610 * 120.00435 * 359.72109 * 19 18 17 21 21 C 1.43205 * 119.99554 * 179.97438 * 19 18 17 22 22 C 9.04891 * 159.67680 * 97.44572 * 10 1 2 23 23 C 9.86447 * 154.83272 * 82.73665 * 10 1 2 24 24 C 1.53003 * 117.49704 * 298.35805 * 23 22 21 25 25 C 1.52992 * 60.00113 * 252.51511 * 24 23 22 26 26 C 1.47065 * 87.88277 * 27.33805 * 18 17 15 27 27 H 0.96996 * 120.00130 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47223 * 59.99715 * 10 9 7 29 29 H 1.09002 * 109.46945 * 299.99739 * 10 9 7 30 30 H 0.97007 * 119.99981 * 0.02562 * 13 11 10 31 31 H 1.09007 * 109.46949 * 59.99782 * 14 13 11 32 32 H 1.09000 * 109.47080 * 300.00631 * 14 13 11 33 33 H 0.96704 * 114.00321 * 46.93043 * 16 15 14 34 34 H 1.09003 * 113.47132 * 105.36494 * 17 15 14 35 35 H 1.09004 * 113.52315 * 334.93638 * 17 15 14 36 36 H 1.08997 * 115.55261 * 84.07257 * 23 22 21 37 37 H 1.09003 * 117.50148 * 0.02562 * 24 23 22 38 38 H 1.09003 * 117.49779 * 145.02374 * 24 23 22 39 39 H 1.09006 * 117.49935 * 252.51108 * 25 24 23 40 40 H 1.08999 * 117.51900 * 107.48476 * 25 24 23 41 41 H 1.09001 * 113.46366 * 87.44419 * 26 18 17 42 42 H 1.09003 * 113.46668 * 217.86978 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6966 1.2124 7 6 2.0103 -1.2019 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0005 11 6 1.9877 -5.3026 0.0012 12 8 0.7914 -5.5023 0.0011 13 7 2.8445 -6.3429 0.0008 14 6 2.3310 -7.7150 0.0008 15 6 3.5030 -8.6984 0.0009 16 8 4.5119 -8.3748 -0.9580 17 6 3.0854 -10.1754 0.0004 18 7 4.1802 -10.4316 0.9483 19 6 4.9620 -11.4822 1.2668 20 8 4.8155 -12.5450 0.6942 21 6 5.9617 -11.3485 2.2834 22 6 6.7816 -11.2378 3.1179 23 6 7.8092 -11.1000 4.1629 24 6 7.5477 -11.7855 5.5055 25 6 7.4571 -10.2623 5.3938 26 6 4.0421 -9.0389 1.4000 27 1 -0.4850 0.8400 0.0004 28 1 3.1247 -3.7312 0.8905 29 1 3.1247 -3.7312 -0.8895 30 1 3.8014 -6.1832 0.0004 31 1 1.7220 -7.8750 -0.8890 32 1 1.7226 -7.8752 0.8909 33 1 4.7727 -7.4436 -0.9556 34 1 3.2225 -10.6650 -0.9638 35 1 2.0957 -10.3478 0.4234 36 1 8.8391 -11.0644 3.8077 37 1 6.6149 -12.3388 5.6149 38 1 8.4057 -12.2012 6.0339 39 1 8.2555 -9.6759 5.8487 40 1 6.4648 -9.8129 5.4296 41 1 3.3046 -8.9107 2.1923 42 1 4.9944 -8.5602 1.6283 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041568047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:29 Heat of formation + Delta-G solvation = 8.974805 kcal Electronic energy + Delta-G solvation = -24938.420729 eV Core-core repulsion = 21014.245808 eV Total energy + Delta-G solvation = -3924.174921 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.31826 -39.39881 -38.58834 -38.10476 -35.95038 -34.29048 -33.21055 -32.48496 -30.83799 -29.32325 -26.80069 -26.52364 -25.51013 -24.54887 -23.01942 -22.03985 -20.77102 -20.61757 -18.69480 -18.14682 -17.38638 -17.17343 -16.87380 -16.44763 -16.02854 -15.70317 -15.48913 -15.35509 -14.85667 -14.64499 -14.34387 -14.10453 -13.86684 -13.54301 -13.23600 -13.18321 -13.00893 -12.64430 -12.62093 -12.39891 -12.15400 -11.94423 -11.79615 -11.46817 -11.10831 -11.08283 -10.86791 -10.79844 -10.63102 -10.45948 -10.19719 -9.89382 -9.60822 -9.27570 -9.19068 -9.10154 -8.32363 -6.57448 -6.27208 -3.98806 1.11966 1.61896 2.29462 2.80028 2.90769 3.07001 3.19470 3.20840 3.22165 3.25339 3.37043 3.46531 3.48442 3.69917 4.14581 4.16572 4.20053 4.27108 4.33276 4.53611 4.69643 4.87536 4.90841 4.97743 5.02389 5.08054 5.12536 5.18343 5.21508 5.29058 5.36024 5.43461 5.45156 5.46955 5.61864 5.77111 6.02331 6.26513 6.77105 7.01034 7.08975 7.40250 7.53687 7.60724 8.29055 8.39888 9.18083 10.80073 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013925 B = 0.001918 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.339996 B =14593.781613 C =16036.350279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.073 0.927 9 S -0.058 6.058 10 C -0.155 4.155 11 C 0.536 3.464 12 O -0.510 6.510 13 N -0.742 5.742 14 C 0.109 3.891 15 C 0.085 3.915 16 O -0.523 6.523 17 C 0.125 3.875 18 N -0.631 5.631 19 C 0.669 3.331 20 O -0.520 6.520 21 C -0.214 4.214 22 C -0.047 4.047 23 C -0.068 4.068 24 C -0.160 4.160 25 C -0.158 4.158 26 C 0.074 3.926 27 H 0.270 0.730 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.394 0.606 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.383 0.617 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.138 0.862 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.940 -20.552 8.051 26.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.305 4.305 11 C 0.322 3.678 12 O -0.384 6.384 13 N -0.399 5.399 14 C -0.016 4.016 15 C 0.042 3.958 16 O -0.329 6.329 17 C 0.003 3.997 18 N -0.366 5.366 19 C 0.459 3.541 20 O -0.397 6.397 21 C -0.217 4.217 22 C -0.050 4.050 23 C -0.086 4.086 24 C -0.196 4.196 25 C -0.195 4.195 26 C -0.049 4.049 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.228 0.772 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.232 0.768 34 H 0.115 0.885 35 H 0.129 0.871 36 H 0.155 0.845 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.751 -22.187 7.647 26.709 hybrid contribution 2.580 1.950 0.142 3.237 sum 15.331 -20.237 7.789 26.557 Atomic orbital electron populations 1.70001 1.05953 1.27663 1.46592 1.24995 0.95041 0.99062 0.94459 0.86218 0.79240 0.81199 0.78812 1.19910 1.20795 1.19933 1.22811 0.94864 0.91595 1.59299 0.90928 1.85427 1.04651 0.96356 1.96746 1.23540 1.06816 0.95101 1.05069 1.20331 0.86431 0.86156 0.74895 1.90727 1.15272 1.85462 1.46897 1.45928 1.09814 1.05255 1.78890 1.21696 0.94836 0.80616 1.04433 1.22678 0.88914 0.95210 0.88990 1.86596 1.56746 1.32209 1.57359 1.23072 0.90986 0.90757 0.94921 1.49046 1.35265 1.11813 1.40449 1.13879 0.78673 0.81702 0.79851 1.90881 1.69957 1.26046 1.52841 1.20357 0.98881 1.04104 0.98366 1.21383 0.93290 0.97134 0.93149 1.18945 0.95662 1.08474 0.85472 1.23122 1.04423 0.95650 0.96444 1.23133 1.04167 0.94126 0.98093 1.23983 1.02850 0.80315 0.97789 0.92062 0.89086 0.89030 0.77159 0.89615 0.89603 0.76775 0.88488 0.87140 0.84467 0.88079 0.87232 0.87164 0.88016 0.87832 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.46 13.22 55.49 0.73 -24.72 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 20.76 29.55 -169.99 -5.02 15.73 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.54 -14.71 9.50 30.94 0.29 -14.42 16 8 H 0.07 1.87 7.80 -52.48 -0.41 1.46 16 9 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 10 C -0.15 -2.80 6.16 36.01 0.22 -2.58 16 11 C 0.54 8.65 7.85 -10.99 -0.09 8.56 16 12 O -0.51 -10.46 15.86 5.56 0.09 -10.38 16 13 N -0.74 -7.52 5.34 -60.30 -0.32 -7.84 16 14 C 0.11 0.94 5.43 -4.05 -0.02 0.92 16 15 C 0.09 0.62 1.73 -89.98 -0.16 0.47 16 16 O -0.52 -4.31 13.56 -35.23 -0.48 -4.79 16 17 C 0.13 1.00 8.04 -8.52 -0.07 0.94 16 18 N -0.63 -6.23 3.69 -187.97 -0.69 -6.92 16 19 C 0.67 8.51 7.90 -14.33 -0.11 8.40 16 20 O -0.52 -8.39 17.86 5.27 0.09 -8.30 16 21 C -0.21 -2.42 13.43 -38.82 -0.52 -2.94 16 22 C -0.05 -0.43 13.48 -37.11 -0.50 -0.93 16 23 C -0.07 -0.39 6.22 -93.40 -0.58 -0.97 16 24 C -0.16 -0.70 10.21 -26.73 -0.27 -0.97 16 25 C -0.16 -0.68 10.21 -26.74 -0.27 -0.95 16 26 C 0.07 0.51 7.81 -8.39 -0.07 0.45 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 29 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 30 H 0.39 2.69 6.95 -40.82 -0.28 2.41 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.72 7.90 -51.93 -0.41 0.31 16 33 H 0.38 1.96 7.21 45.56 0.33 2.29 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.11 0.64 8.11 -51.93 -0.42 0.21 16 36 H 0.14 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.57 7.94 -51.93 -0.41 0.16 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 390.06 15.07 5.88 5.88 Total: -1.00 -38.10 390.06 -9.14 -47.25 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -4.97 Total: -0.12 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -2.24 Total: -2.08 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: -0.28 Total: -39.49 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.30 Total: -23.46 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.10 -9.14 -47.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041568047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.223 kcal (2) G-P(sol) polarization free energy of solvation -38.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds