Wall clock time and date at job start Tue Mar 31 2020 21:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86802 * 119.99316 * 2 1 4 4 H 1.48503 * 109.46904 * 240.00082 * 3 2 1 5 5 H 1.48494 * 109.47444 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47116 * 120.00587 * 3 2 1 7 7 C 1.38790 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99837 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00408 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00285 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46968 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00359 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99664 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00325 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47720 * 180.02562 * 14 13 11 16 16 O 1.42902 * 113.27933 * 313.06618 * 15 14 13 17 17 C 1.53495 * 114.20961 * 180.02562 * 15 14 13 18 18 N 1.47065 * 87.98606 * 220.14650 * 17 15 14 19 19 C 1.34781 * 136.05348 * 207.08855 * 18 17 15 20 20 O 1.21610 * 120.00435 * 359.72109 * 19 18 17 21 21 C 1.43205 * 119.99554 * 179.97438 * 19 18 17 22 22 C 9.04891 * 159.67680 * 97.44572 * 10 1 2 23 23 C 9.86447 * 154.83272 * 82.73665 * 10 1 2 24 24 C 1.53003 * 117.49704 * 298.35805 * 23 22 21 25 25 C 1.52992 * 60.00113 * 252.51511 * 24 23 22 26 26 C 1.47065 * 87.88277 * 27.33805 * 18 17 15 27 27 H 0.96996 * 120.00130 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47223 * 59.99715 * 10 9 7 29 29 H 1.09002 * 109.46945 * 299.99739 * 10 9 7 30 30 H 0.97007 * 119.99981 * 0.02562 * 13 11 10 31 31 H 1.09007 * 109.46949 * 59.99782 * 14 13 11 32 32 H 1.09000 * 109.47080 * 300.00631 * 14 13 11 33 33 H 0.96704 * 114.00321 * 46.93043 * 16 15 14 34 34 H 1.09003 * 113.47132 * 105.36494 * 17 15 14 35 35 H 1.09004 * 113.52315 * 334.93638 * 17 15 14 36 36 H 1.08997 * 115.55261 * 84.07257 * 23 22 21 37 37 H 1.09003 * 117.50148 * 0.02562 * 24 23 22 38 38 H 1.09003 * 117.49779 * 145.02374 * 24 23 22 39 39 H 1.09006 * 117.49935 * 252.51108 * 25 24 23 40 40 H 1.08999 * 117.51900 * 107.48476 * 25 24 23 41 41 H 1.09001 * 113.46366 * 87.44419 * 26 18 17 42 42 H 1.09003 * 113.46668 * 217.86978 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6966 1.2124 7 6 2.0103 -1.2019 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0005 11 6 1.9877 -5.3026 0.0012 12 8 0.7914 -5.5023 0.0011 13 7 2.8445 -6.3429 0.0008 14 6 2.3310 -7.7150 0.0008 15 6 3.5030 -8.6984 0.0009 16 8 4.5119 -8.3748 -0.9580 17 6 3.0854 -10.1754 0.0004 18 7 4.1802 -10.4316 0.9483 19 6 4.9620 -11.4822 1.2668 20 8 4.8155 -12.5450 0.6942 21 6 5.9617 -11.3485 2.2834 22 6 6.7816 -11.2378 3.1179 23 6 7.8092 -11.1000 4.1629 24 6 7.5477 -11.7855 5.5055 25 6 7.4571 -10.2623 5.3938 26 6 4.0421 -9.0389 1.4000 27 1 -0.4850 0.8400 0.0004 28 1 3.1247 -3.7312 0.8905 29 1 3.1247 -3.7312 -0.8895 30 1 3.8014 -6.1832 0.0004 31 1 1.7220 -7.8750 -0.8890 32 1 1.7226 -7.8752 0.8909 33 1 4.7727 -7.4436 -0.9556 34 1 3.2225 -10.6650 -0.9638 35 1 2.0957 -10.3478 0.4234 36 1 8.8391 -11.0644 3.8077 37 1 6.6149 -12.3388 5.6149 38 1 8.4057 -12.2012 6.0339 39 1 8.2555 -9.6759 5.8487 40 1 6.4648 -9.8129 5.4296 41 1 3.3046 -8.9107 2.1923 42 1 4.9944 -8.5602 1.6283 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041568047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:28 Heat of formation + Delta-G solvation = -20.613447 kcal Electronic energy + Delta-G solvation = -24939.703772 eV Core-core repulsion = 21014.245808 eV Total energy + Delta-G solvation = -3925.457964 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.06938 -40.56177 -39.56268 -38.53267 -36.74443 -35.30948 -34.55376 -33.94296 -31.87249 -30.46321 -27.79678 -27.42243 -27.22801 -25.17155 -23.32239 -22.75054 -21.87430 -21.33998 -19.99323 -19.27655 -18.45784 -17.95098 -17.70674 -17.45935 -16.85208 -16.80108 -16.68737 -16.49586 -16.00468 -15.80825 -15.40919 -15.12705 -14.84791 -14.58884 -14.33756 -14.18779 -14.00262 -13.56345 -13.29200 -13.16979 -13.14037 -13.02576 -12.84282 -12.62357 -12.45394 -12.38961 -12.19392 -11.76553 -11.65947 -11.17367 -11.14811 -11.10306 -10.97626 -10.76385 -10.23711 -10.19229 -10.04650 -8.62843 -8.32093 -6.09339 0.30597 0.91667 1.28730 1.45644 1.48409 1.55592 1.59707 1.62618 2.16084 2.27552 2.30592 2.60465 2.80846 2.98210 2.99025 3.02263 3.34291 3.51672 3.69511 3.79758 3.86409 3.98659 4.01968 4.18878 4.34252 4.35569 4.37186 4.47253 4.57220 4.57858 4.62640 4.68736 4.74559 4.78725 4.94951 5.05304 5.18653 5.29395 5.44749 6.04259 6.22191 6.29277 6.38135 6.55639 6.72505 7.09727 7.22115 8.76505 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013925 B = 0.001918 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.339996 B =14593.781613 C =16036.350279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.996 3.004 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.153 6.153 10 C -0.131 4.131 11 C 0.540 3.460 12 O -0.560 6.560 13 N -0.712 5.712 14 C 0.114 3.886 15 C 0.103 3.897 16 O -0.538 6.538 17 C 0.115 3.885 18 N -0.633 5.633 19 C 0.662 3.338 20 O -0.572 6.572 21 C -0.265 4.265 22 C -0.019 4.019 23 C -0.089 4.089 24 C -0.155 4.155 25 C -0.148 4.148 26 C 0.078 3.922 27 H 0.270 0.730 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.414 0.586 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.396 0.604 34 H 0.085 0.915 35 H 0.136 0.864 36 H 0.158 0.842 37 H 0.091 0.909 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.096 0.904 41 H 0.125 0.875 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.781 -19.956 9.423 28.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.693 4.693 8 H 0.103 0.897 9 S 0.075 5.925 10 C -0.283 4.283 11 C 0.326 3.674 12 O -0.437 6.437 13 N -0.369 5.369 14 C -0.011 4.011 15 C 0.060 3.940 16 O -0.347 6.347 17 C -0.007 4.007 18 N -0.365 5.365 19 C 0.454 3.546 20 O -0.454 6.454 21 C -0.268 4.268 22 C -0.022 4.022 23 C -0.106 4.106 24 C -0.191 4.191 25 C -0.185 4.185 26 C -0.045 4.045 27 H 0.079 0.921 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.252 0.748 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.248 0.752 34 H 0.103 0.897 35 H 0.153 0.847 36 H 0.175 0.825 37 H 0.110 0.890 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.114 0.886 41 H 0.143 0.857 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.645 -21.576 9.023 28.137 hybrid contribution 1.783 1.663 -0.254 2.451 sum 17.428 -19.913 8.769 27.878 Atomic orbital electron populations 1.70173 1.07934 1.28591 1.48068 1.26101 0.95931 1.03288 0.93885 0.85039 0.77808 0.75887 0.79492 1.18736 1.20711 1.18589 1.23177 0.95394 0.92034 1.58690 0.89743 1.85603 1.10622 0.99257 1.97063 1.23387 1.03565 0.94169 1.07143 1.19966 0.86095 0.86455 0.74852 1.90723 1.17393 1.85966 1.49647 1.45541 1.10264 1.04692 1.76405 1.21754 0.95271 0.79370 1.04673 1.22408 0.88259 0.94138 0.89192 1.86596 1.56827 1.33587 1.57665 1.23352 0.91788 0.91057 0.94485 1.49141 1.34791 1.12278 1.40332 1.14129 0.79088 0.81602 0.79818 1.90830 1.71650 1.28003 1.54907 1.20362 1.00174 1.06661 0.99601 1.22161 0.92457 0.95061 0.92474 1.19321 0.95541 1.10511 0.85260 1.23242 1.04902 0.95929 0.95057 1.23246 1.04609 0.94248 0.96358 1.24185 1.04016 0.78392 0.97876 0.92086 0.86762 0.86970 0.74779 0.90305 0.88639 0.75208 0.89692 0.84677 0.82457 0.89018 0.85057 0.85025 0.88589 0.85718 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.52 13.22 21.65 0.29 -54.23 16 2 C 0.01 0.70 5.49 84.85 0.47 1.17 16 3 Si 1.00 42.06 29.55 68.60 2.03 44.09 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 7 C -0.55 -29.67 9.50 67.95 0.65 -29.02 16 8 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 9 S -0.15 -7.97 20.57 -56.49 -1.16 -9.13 16 10 C -0.13 -4.52 6.16 71.24 0.44 -4.09 16 11 C 0.54 16.56 7.85 87.66 0.69 17.25 16 12 O -0.56 -22.85 15.86 -3.02 -0.05 -22.90 16 13 N -0.71 -12.43 5.34 -463.07 -2.47 -14.90 16 14 C 0.11 1.70 5.43 86.38 0.47 2.16 16 15 C 0.10 1.29 1.73 -10.38 -0.02 1.27 16 16 O -0.54 -7.73 13.56 -148.98 -2.02 -9.75 16 17 C 0.12 1.74 8.04 83.17 0.67 2.41 16 18 N -0.63 -12.12 3.69 -867.35 -3.20 -15.31 16 19 C 0.66 17.37 7.90 85.49 0.68 18.05 16 20 O -0.57 -19.55 17.86 -4.06 -0.07 -19.62 16 21 C -0.27 -6.03 13.43 30.00 0.40 -5.62 16 22 C -0.02 -0.33 13.48 31.12 0.42 0.09 16 23 C -0.09 -0.82 6.22 -12.60 -0.08 -0.90 16 24 C -0.15 -0.98 10.21 30.59 0.31 -0.67 16 25 C -0.15 -0.85 10.21 30.59 0.31 -0.54 16 26 C 0.08 0.90 7.81 83.26 0.65 1.55 16 27 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 28 H 0.11 3.42 8.14 -2.40 -0.02 3.40 16 29 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 30 H 0.41 4.09 6.95 -92.70 -0.64 3.44 16 31 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.10 1.36 7.90 -2.39 -0.02 1.34 16 33 H 0.40 2.88 7.21 -74.05 -0.53 2.35 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.14 1.35 8.11 -2.39 -0.02 1.33 16 36 H 0.16 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.13 0.22 8.14 -2.38 -0.02 0.20 16 40 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.13 0.98 7.94 -2.39 -0.02 0.96 16 42 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -87.25 390.06 -0.71 -87.96 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -0.10 Total: 10.71 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 6.05 Total: 3.10 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -5.38 Total: -84.45 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -2.14 Total: -52.27 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 16 Polarization: -7.97 SS G_CDS: -1.16 Total: -9.13 kcal Total: -87.25 -0.71 -87.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041568047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.345 kcal (2) G-P(sol) polarization free energy of solvation -87.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds