Wall clock time and date at job start Tue Mar 31 2020 20:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 F 1.39905 * 109.46537 * 2 1 4 4 F 1.39901 * 109.47157 * 240.00191 * 2 1 3 5 5 C 1.50695 * 109.46934 * 119.99762 * 2 1 3 6 6 O 1.21274 * 120.00413 * 335.27443 * 5 2 1 7 7 N 1.34784 * 119.99635 * 155.00401 * 5 2 1 8 8 C 1.47068 * 136.05818 * 359.62721 * 7 5 2 9 9 C 1.53230 * 88.08091 * 207.20478 * 8 7 5 10 10 O 1.42903 * 114.01904 * 87.71818 * 9 8 7 11 11 C 1.53007 * 114.32643 * 220.46834 * 9 8 7 12 12 N 1.46493 * 109.47391 * 278.76278 * 11 9 8 13 13 C 1.34772 * 120.00420 * 179.97438 * 12 11 9 14 14 O 1.21280 * 119.99795 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00158 * 179.97438 * 13 12 11 16 16 S 1.81004 * 109.47236 * 179.97438 * 15 13 12 17 17 C 1.76193 * 100.00237 * 180.02562 * 16 15 13 18 18 H 1.08003 * 120.00251 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00375 * 179.97438 * 17 16 15 20 20 N 1.31641 * 119.99735 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00374 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47113 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47052 * 120.00081 * 21 19 17 24 24 H 1.48500 * 109.47351 * 239.99949 * 21 19 17 25 25 C 1.47069 * 136.05474 * 179.97438 * 7 5 2 26 26 H 1.08997 * 109.47451 * 299.99515 * 1 2 3 27 27 H 1.08996 * 109.47484 * 60.00396 * 1 2 3 28 28 H 1.09006 * 109.46794 * 180.02562 * 1 2 3 29 29 H 1.09000 * 113.46792 * 321.93769 * 8 7 5 30 30 H 1.09003 * 113.46300 * 92.37671 * 8 7 5 31 31 H 0.96697 * 114.00105 * 86.39070 * 10 9 8 32 32 H 1.09003 * 109.46802 * 38.76164 * 11 9 8 33 33 H 1.08997 * 109.47113 * 158.75823 * 11 9 8 34 34 H 0.97004 * 119.99984 * 359.97438 * 12 11 9 35 35 H 1.08994 * 109.47422 * 300.00087 * 15 13 12 36 36 H 1.08999 * 109.46898 * 60.00698 * 15 13 12 37 37 H 0.96992 * 119.99789 * 179.97438 * 20 19 17 38 38 H 1.08996 * 113.46652 * 267.62302 * 25 7 5 39 39 H 1.08999 * 113.46785 * 38.00944 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0323 -0.7103 1.2305 6 8 1.3350 -0.7747 2.2206 7 7 3.2544 -1.2789 1.2287 8 6 4.3533 -1.4242 0.2621 9 6 4.7590 -2.7076 0.9945 10 8 4.0938 -3.8813 0.5234 11 6 6.2694 -2.8892 1.1582 12 7 6.8335 -3.4295 -0.0811 13 6 8.1562 -3.6723 -0.1699 14 8 8.8794 -3.4439 0.7764 15 6 8.7363 -4.2286 -1.4447 16 16 10.5233 -4.4419 -1.2516 17 6 10.9283 -5.0843 -2.8415 18 1 10.1527 -5.2291 -3.5791 19 6 12.2442 -5.4035 -3.1465 20 7 13.1896 -5.2266 -2.2477 21 14 12.6736 -6.0839 -4.8323 22 1 11.4407 -6.1864 -5.6535 23 1 13.6394 -5.1756 -5.5014 24 1 13.2825 -7.4300 -4.6824 25 6 4.0733 -2.0321 2.1905 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 4.0133 -1.5978 -0.7588 30 1 5.0985 -0.6316 0.3298 31 1 4.5284 -4.3042 -0.2298 32 1 6.7296 -1.9256 1.3771 33 1 6.4655 -3.5801 1.9781 34 1 6.2549 -3.6125 -0.8380 35 1 8.2764 -5.1924 -1.6629 36 1 8.5397 -3.5381 -2.2649 37 1 14.1091 -5.4500 -2.4608 38 1 4.7432 -1.4030 2.7765 39 1 3.4955 -2.7209 2.8067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041569265.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:37 Heat of formation + Delta-G solvation = -168.464967 kcal Electronic energy + Delta-G solvation = -26626.060885 eV Core-core repulsion = 22139.962068 eV Total energy + Delta-G solvation = -4486.098817 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.70020 -47.70381 -41.39934 -39.49875 -38.78309 -36.04618 -34.33698 -32.48409 -32.13508 -30.98234 -29.43553 -26.91471 -26.63374 -25.51588 -24.32038 -21.41283 -20.70968 -20.36004 -18.67299 -18.29474 -18.12277 -17.57621 -17.28066 -16.52178 -16.47885 -16.01787 -15.68447 -15.47720 -14.87561 -14.83983 -14.65389 -14.50989 -14.13647 -14.06154 -14.00988 -13.84852 -13.51543 -13.24320 -13.16246 -13.08431 -12.87740 -12.64803 -12.63024 -12.29578 -11.93933 -11.48205 -11.11327 -11.08268 -10.83289 -10.78810 -10.33845 -9.87358 -9.61640 -9.45415 -9.20736 -9.11588 -8.31497 -6.57399 -6.27586 -3.98866 1.58885 1.79336 2.78831 2.89795 2.96258 3.17896 3.20513 3.23010 3.27312 3.34277 3.47333 3.67579 3.76646 3.99223 4.14012 4.15496 4.42874 4.64208 4.84201 4.88040 4.96192 4.97169 5.00669 5.08010 5.11015 5.16369 5.26829 5.32598 5.41998 5.60784 5.77298 6.02634 6.25926 6.84277 6.97429 7.15435 7.39632 7.54479 8.29547 8.39271 9.18140 10.79858 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.023732 B = 0.002023 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.547511 B =13836.312295 C =14449.839209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.289 3.711 3 F -0.181 7.181 4 F -0.186 7.186 5 C 0.518 3.482 6 O -0.503 6.503 7 N -0.625 5.625 8 C 0.066 3.934 9 C 0.086 3.914 10 O -0.524 6.524 11 C 0.110 3.890 12 N -0.742 5.742 13 C 0.536 3.464 14 O -0.510 6.510 15 C -0.154 4.154 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.074 0.926 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.920 3.080 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.122 3.878 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.385 0.615 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.395 0.605 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.268 0.732 38 H 0.113 0.887 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.728 8.956 3.856 26.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.249 3.751 3 F -0.162 7.162 4 F -0.167 7.167 5 C 0.303 3.697 6 O -0.377 6.377 7 N -0.359 5.359 8 C -0.057 4.057 9 C 0.043 3.957 10 O -0.330 6.330 11 C -0.015 4.015 12 N -0.399 5.399 13 C 0.322 3.678 14 O -0.383 6.383 15 C -0.305 4.305 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.092 0.908 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.746 3.254 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.205 1.205 25 C 0.000 4.000 26 H 0.120 0.880 27 H 0.111 0.889 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.235 0.765 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.229 0.771 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.131 0.869 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -24.310 9.559 6.494 26.917 hybrid contribution -0.287 -0.756 -3.204 3.304 sum -24.596 8.803 3.290 26.330 Atomic orbital electron populations 1.22656 0.88496 1.06519 1.06321 1.21282 0.95792 0.76068 0.81958 1.93101 1.90559 1.36015 1.96529 1.93057 1.90401 1.80598 1.52650 1.20232 0.80725 0.79577 0.89215 1.90797 1.55077 1.58195 1.33656 1.49275 1.13585 1.54110 1.18969 1.24079 0.87655 0.97642 0.96290 1.22555 0.91152 0.85674 0.96279 1.86570 1.53258 1.39923 1.53269 1.21688 0.89473 1.01469 0.88919 1.45922 1.09008 1.69030 1.15945 1.20337 0.80848 0.76910 0.89714 1.90728 1.58742 1.49915 1.38962 1.23536 1.06523 1.03451 0.96983 1.85432 0.92797 1.84193 1.20869 1.22891 0.96288 1.49788 0.99428 0.90818 1.25006 0.95263 0.95187 0.98176 1.70024 1.01133 1.45251 1.33809 0.86104 0.78523 0.78619 0.82170 1.19605 1.20551 1.20543 1.23147 0.91572 0.92624 0.92679 0.87990 0.88852 0.88659 0.88319 0.87489 0.76545 0.89567 0.89581 0.77064 0.89027 0.89045 0.92177 0.86927 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.12 8.91 37.16 0.33 -0.79 16 2 C 0.29 2.49 2.42 -27.88 -0.07 2.43 16 3 F -0.18 -1.72 17.05 2.25 0.04 -1.68 16 4 F -0.19 -1.63 14.98 2.25 0.03 -1.59 16 5 C 0.52 5.42 7.48 -10.98 -0.08 5.34 16 6 O -0.50 -6.50 16.87 5.56 0.09 -6.40 16 7 N -0.63 -5.60 3.67 -185.34 -0.68 -6.28 16 8 C 0.07 0.45 7.33 -8.64 -0.06 0.39 16 9 C 0.09 0.60 1.65 -90.23 -0.15 0.45 16 10 O -0.52 -4.03 13.55 -35.23 -0.48 -4.51 16 11 C 0.11 0.92 5.37 -4.04 -0.02 0.90 16 12 N -0.74 -7.40 5.32 -60.30 -0.32 -7.72 16 13 C 0.54 8.60 7.85 -10.99 -0.09 8.52 16 14 O -0.51 -10.41 15.86 5.56 0.09 -10.33 16 15 C -0.15 -2.79 6.16 36.00 0.22 -2.57 16 16 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 17 C -0.54 -14.68 9.50 30.94 0.29 -14.39 16 18 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 19 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 20 N -0.87 -25.50 13.22 55.49 0.73 -24.76 16 21 Si 0.92 20.83 29.55 -169.99 -5.02 15.80 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 C 0.12 0.90 8.05 -8.49 -0.07 0.83 16 26 H 0.10 0.62 7.87 -51.93 -0.41 0.21 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.10 0.65 6.82 -51.93 -0.35 0.30 16 30 H 0.11 0.61 8.00 -51.93 -0.42 0.20 16 31 H 0.38 1.84 7.50 45.56 0.34 2.18 16 32 H 0.09 0.72 8.00 -51.93 -0.42 0.30 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.40 2.66 7.24 -40.82 -0.30 2.36 16 35 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 36 H 0.09 1.51 8.14 -51.92 -0.42 1.08 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.11 0.60 8.10 -51.93 -0.42 0.18 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 360.67 15.07 5.44 5.44 Total: -1.00 -36.65 360.67 -6.13 -42.78 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -4.05 Total: -0.02 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 0.21 Total: 3.04 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: -0.27 Total: -38.77 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.30 Total: -21.24 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.07 Total: -3.28 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.65 -6.13 -42.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041569265.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.687 kcal (2) G-P(sol) polarization free energy of solvation -36.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds