Wall clock time and date at job start Tue Mar 31 2020 20:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 F 1.39905 * 109.46537 * 2 1 4 4 F 1.39901 * 109.47157 * 240.00191 * 2 1 3 5 5 C 1.50695 * 109.46934 * 119.99762 * 2 1 3 6 6 O 1.21274 * 120.00413 * 335.27443 * 5 2 1 7 7 N 1.34784 * 119.99635 * 155.00401 * 5 2 1 8 8 C 1.47068 * 136.05818 * 359.62721 * 7 5 2 9 9 C 1.53230 * 88.08091 * 207.20478 * 8 7 5 10 10 O 1.42903 * 114.01904 * 87.71818 * 9 8 7 11 11 C 1.53007 * 114.32643 * 220.46834 * 9 8 7 12 12 N 1.46493 * 109.47391 * 278.76278 * 11 9 8 13 13 C 1.34772 * 120.00420 * 179.97438 * 12 11 9 14 14 O 1.21280 * 119.99795 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00158 * 179.97438 * 13 12 11 16 16 S 1.81004 * 109.47236 * 179.97438 * 15 13 12 17 17 C 1.76193 * 100.00237 * 180.02562 * 16 15 13 18 18 H 1.08003 * 120.00251 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00375 * 179.97438 * 17 16 15 20 20 N 1.31641 * 119.99735 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00374 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47113 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47052 * 120.00081 * 21 19 17 24 24 H 1.48500 * 109.47351 * 239.99949 * 21 19 17 25 25 C 1.47069 * 136.05474 * 179.97438 * 7 5 2 26 26 H 1.08997 * 109.47451 * 299.99515 * 1 2 3 27 27 H 1.08996 * 109.47484 * 60.00396 * 1 2 3 28 28 H 1.09006 * 109.46794 * 180.02562 * 1 2 3 29 29 H 1.09000 * 113.46792 * 321.93769 * 8 7 5 30 30 H 1.09003 * 113.46300 * 92.37671 * 8 7 5 31 31 H 0.96697 * 114.00105 * 86.39070 * 10 9 8 32 32 H 1.09003 * 109.46802 * 38.76164 * 11 9 8 33 33 H 1.08997 * 109.47113 * 158.75823 * 11 9 8 34 34 H 0.97004 * 119.99984 * 359.97438 * 12 11 9 35 35 H 1.08994 * 109.47422 * 300.00087 * 15 13 12 36 36 H 1.08999 * 109.46898 * 60.00698 * 15 13 12 37 37 H 0.96992 * 119.99789 * 179.97438 * 20 19 17 38 38 H 1.08996 * 113.46652 * 267.62302 * 25 7 5 39 39 H 1.08999 * 113.46785 * 38.00944 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3191 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0323 -0.7103 1.2305 6 8 1.3350 -0.7747 2.2206 7 7 3.2544 -1.2789 1.2287 8 6 4.3533 -1.4242 0.2621 9 6 4.7590 -2.7076 0.9945 10 8 4.0938 -3.8813 0.5234 11 6 6.2694 -2.8892 1.1582 12 7 6.8335 -3.4295 -0.0811 13 6 8.1562 -3.6723 -0.1699 14 8 8.8794 -3.4439 0.7764 15 6 8.7363 -4.2286 -1.4447 16 16 10.5233 -4.4419 -1.2516 17 6 10.9283 -5.0843 -2.8415 18 1 10.1527 -5.2291 -3.5791 19 6 12.2442 -5.4035 -3.1465 20 7 13.1896 -5.2266 -2.2477 21 14 12.6736 -6.0839 -4.8323 22 1 11.4407 -6.1864 -5.6535 23 1 13.6394 -5.1756 -5.5014 24 1 13.2825 -7.4300 -4.6824 25 6 4.0733 -2.0321 2.1905 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 4.0133 -1.5978 -0.7588 30 1 5.0985 -0.6316 0.3298 31 1 4.5284 -4.3042 -0.2298 32 1 6.7296 -1.9256 1.3771 33 1 6.4655 -3.5801 1.9781 34 1 6.2549 -3.6125 -0.8380 35 1 8.2764 -5.1924 -1.6629 36 1 8.5397 -3.5381 -2.2649 37 1 14.1091 -5.4500 -2.4608 38 1 4.7432 -1.4030 2.7765 39 1 3.4955 -2.7209 2.8067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041569265.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:37 Heat of formation + Delta-G solvation = -198.389722 kcal Electronic energy + Delta-G solvation = -26627.358520 eV Core-core repulsion = 22139.962068 eV Total energy + Delta-G solvation = -4487.396452 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.37935 -48.38578 -42.08311 -40.57629 -39.71592 -36.76533 -35.33754 -34.55808 -32.74228 -31.92047 -30.55377 -27.82675 -27.48212 -27.28410 -24.99203 -22.10467 -21.86737 -21.01582 -19.98055 -19.20977 -18.96884 -18.44503 -18.19241 -17.69608 -17.17724 -16.86053 -16.73961 -16.65963 -16.47473 -15.99664 -15.53115 -15.36272 -15.20528 -14.85684 -14.73008 -14.69541 -14.57978 -14.33102 -14.12186 -13.96874 -13.61481 -13.41569 -13.26310 -13.20315 -13.13262 -12.93576 -12.89813 -12.59284 -12.14870 -11.68852 -11.49499 -11.13978 -11.03614 -10.95674 -10.23272 -10.19979 -10.14319 -8.63124 -8.33003 -6.09829 0.83236 1.12451 1.29587 1.42838 1.49209 1.59333 1.62626 2.16611 2.29616 2.30494 2.64780 2.75354 2.98608 3.01682 3.17258 3.33933 3.37403 3.50380 3.77396 4.00923 4.06795 4.35181 4.35563 4.37380 4.45115 4.48547 4.54219 4.57426 4.58073 4.63499 4.77487 4.89093 5.29747 5.45031 6.15338 6.22284 6.38971 6.41236 6.55094 7.09270 7.22225 8.76174 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.023732 B = 0.002023 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.547511 B =13836.312295 C =14449.839209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.289 3.711 3 F -0.187 7.187 4 F -0.186 7.186 5 C 0.509 3.491 6 O -0.537 6.537 7 N -0.630 5.630 8 C 0.067 3.933 9 C 0.104 3.896 10 O -0.537 6.537 11 C 0.114 3.886 12 N -0.713 5.713 13 C 0.540 3.460 14 O -0.560 6.560 15 C -0.131 4.131 16 S -0.154 6.154 17 C -0.543 4.543 18 H 0.084 0.916 19 C 0.012 3.988 20 N -0.911 5.911 21 Si 0.997 3.003 22 H -0.256 1.256 23 H -0.276 1.276 24 H -0.276 1.276 25 C 0.114 3.886 26 H 0.100 0.900 27 H 0.113 0.887 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.123 0.877 31 H 0.397 0.603 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.415 0.585 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.270 0.730 38 H 0.135 0.865 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.397 8.963 2.063 27.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.250 3.750 3 F -0.168 7.168 4 F -0.167 7.167 5 C 0.295 3.705 6 O -0.414 6.414 7 N -0.363 5.363 8 C -0.055 4.055 9 C 0.061 3.939 10 O -0.345 6.345 11 C -0.011 4.011 12 N -0.369 5.369 13 C 0.326 3.674 14 O -0.437 6.437 15 C -0.282 4.282 16 S 0.074 5.926 17 C -0.690 4.690 18 H 0.102 0.898 19 C -0.193 4.193 20 N -0.548 5.548 21 Si 0.819 3.181 22 H -0.179 1.179 23 H -0.201 1.201 24 H -0.202 1.202 25 C -0.008 4.008 26 H 0.119 0.881 27 H 0.131 0.869 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.141 0.859 31 H 0.249 0.751 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.253 0.747 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.079 0.921 38 H 0.152 0.848 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -26.023 9.559 4.660 28.112 hybrid contribution 0.123 -0.749 -2.595 2.704 sum -25.900 8.810 2.065 27.435 Atomic orbital electron populations 1.22707 0.86644 1.07157 1.07249 1.21378 0.96997 0.75485 0.81183 1.93087 1.90776 1.36425 1.96519 1.93051 1.90561 1.80595 1.52497 1.20593 0.80916 0.79607 0.89434 1.90772 1.56071 1.59698 1.34881 1.49433 1.13566 1.53315 1.20023 1.24241 0.87225 0.97831 0.96224 1.22293 0.89739 0.85657 0.96219 1.86571 1.53741 1.40200 1.54024 1.21756 0.90229 1.01515 0.87608 1.45533 1.07054 1.66993 1.17305 1.19962 0.82377 0.76773 0.88271 1.90724 1.60434 1.52368 1.40200 1.23383 1.00416 1.05429 0.99007 1.85604 1.00640 1.84589 1.21812 1.23236 0.96865 1.49316 0.99624 0.89766 1.26108 0.95204 0.95451 1.02517 1.70188 1.01587 1.46752 1.36292 0.84930 0.78670 0.77681 0.76830 1.17910 1.20144 1.20169 1.23376 0.91652 0.92911 0.92838 0.88135 0.86851 0.88186 0.87646 0.85874 0.75077 0.88841 0.90233 0.74704 0.86904 0.86853 0.92091 0.84765 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 8.91 71.98 0.64 -1.32 16 2 C 0.29 4.60 2.42 29.85 0.07 4.68 16 3 F -0.19 -3.32 17.05 44.97 0.77 -2.55 16 4 F -0.19 -2.89 14.98 44.97 0.67 -2.22 16 5 C 0.51 10.18 7.48 87.65 0.66 10.84 16 6 O -0.54 -13.77 16.87 -3.01 -0.05 -13.83 16 7 N -0.63 -10.26 3.67 -859.18 -3.15 -13.41 16 8 C 0.07 0.74 7.33 83.09 0.61 1.35 16 9 C 0.10 1.19 1.65 -10.54 -0.02 1.17 16 10 O -0.54 -6.90 13.55 -148.98 -2.02 -8.92 16 11 C 0.11 1.63 5.37 86.38 0.46 2.10 16 12 N -0.71 -12.22 5.32 -463.08 -2.46 -14.69 16 13 C 0.54 16.49 7.85 87.66 0.69 17.18 16 14 O -0.56 -22.78 15.86 -3.03 -0.05 -22.82 16 15 C -0.13 -4.52 6.16 71.23 0.44 -4.08 16 16 S -0.15 -8.03 20.57 -56.49 -1.16 -9.20 16 17 C -0.54 -29.61 9.50 67.95 0.65 -28.96 16 18 H 0.08 4.24 7.80 -2.91 -0.02 4.21 16 19 C 0.01 0.65 5.49 84.86 0.47 1.12 16 20 N -0.91 -54.64 13.22 21.65 0.29 -54.36 16 21 Si 1.00 42.30 29.55 68.60 2.03 44.33 16 22 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 23 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 25 C 0.11 1.49 8.05 83.19 0.67 2.16 16 26 H 0.10 1.14 7.87 -2.39 -0.02 1.12 16 27 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.11 1.07 6.82 -2.39 -0.02 1.05 16 30 H 0.12 1.02 8.00 -2.39 -0.02 1.00 16 31 H 0.40 2.53 7.50 -74.06 -0.56 1.98 16 32 H 0.09 1.32 8.00 -2.39 -0.02 1.30 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.42 4.01 7.24 -92.71 -0.67 3.34 16 35 H 0.11 3.42 8.14 -2.40 -0.02 3.40 16 36 H 0.11 3.43 8.14 -2.40 -0.02 3.41 16 37 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 38 H 0.13 1.16 8.10 -2.39 -0.02 1.14 16 39 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -81.76 360.67 0.08 -81.68 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -0.11 Total: 9.76 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 5.33 Total: 6.23 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -5.33 Total: -82.46 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -2.12 Total: -45.57 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 1.44 Total: -4.77 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.16 Total: -9.20 kcal Total: -81.76 0.08 -81.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041569265.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.713 kcal (2) G-P(sol) polarization free energy of solvation -81.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds