Wall clock time and date at job start Tue Mar 31 2020 21:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00198 * 2 1 4 4 H 1.48498 * 109.47445 * 270.00066 * 3 2 1 5 5 H 1.48501 * 109.47147 * 30.00232 * 3 2 1 6 6 H 1.48505 * 109.47313 * 149.99961 * 3 2 1 7 7 C 1.38804 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00025 * 0.02562 * 7 2 1 9 9 S 1.76203 * 119.99880 * 180.02562 * 7 2 1 10 10 C 1.81003 * 99.99924 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47180 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99415 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99966 * 179.97438 * 11 10 9 14 14 C 1.47578 * 134.49005 * 179.97438 * 13 11 10 15 15 C 1.53949 * 86.11491 * 155.36554 * 14 13 11 16 16 O 1.42900 * 113.74301 * 269.15741 * 15 14 13 17 17 C 1.52992 * 113.74237 * 137.95355 * 15 14 13 18 18 N 1.46499 * 109.47267 * 185.00160 * 17 15 14 19 19 C 1.34784 * 119.99971 * 180.02562 * 18 17 15 20 20 O 1.21614 * 119.99576 * 359.72702 * 19 18 17 21 21 C 1.43203 * 119.99825 * 179.97438 * 19 18 17 22 22 C 9.18946 * 133.55095 * 168.35210 * 10 1 2 23 23 C 8.93261 * 116.25023 * 166.04156 * 13 1 2 24 24 C 1.52996 * 117.50161 * 56.83660 * 23 22 21 25 25 C 1.53003 * 117.49999 * 348.21027 * 23 22 21 26 26 C 1.47571 * 134.49349 * 0.02562 * 13 11 10 27 27 H 0.97006 * 120.00278 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46792 * 59.99714 * 10 9 7 29 29 H 1.08997 * 109.47108 * 300.00066 * 10 9 7 30 30 H 1.09002 * 113.76818 * 41.06708 * 14 13 11 31 31 H 1.08997 * 113.87314 * 269.68078 * 14 13 11 32 32 H 0.96698 * 113.99896 * 178.07312 * 16 15 14 33 33 H 1.09004 * 109.47330 * 65.00064 * 17 15 14 34 34 H 1.09005 * 109.47124 * 305.00268 * 17 15 14 35 35 H 0.96999 * 119.99984 * 359.97438 * 18 17 15 36 36 H 1.08999 * 115.54843 * 202.54678 * 23 22 21 37 37 H 1.09006 * 117.49705 * 359.97438 * 24 23 22 38 38 H 1.08995 * 117.50278 * 145.02123 * 24 23 22 39 39 H 1.08998 * 117.49571 * 214.98161 * 25 23 22 40 40 H 1.08999 * 117.49851 * 0.02562 * 25 23 22 41 41 H 1.09000 * 113.77247 * 90.33115 * 26 13 11 42 42 H 1.09000 * 113.77279 * 318.93898 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 16 3.7722 -1.2021 0.0001 10 6 4.0865 -2.9846 -0.0001 11 6 5.5730 -3.2327 -0.0002 12 8 6.3439 -2.2964 0.0003 13 7 6.0456 -4.4948 0.0001 14 6 7.3942 -5.0942 -0.0004 15 6 6.7321 -6.3274 0.6407 16 8 6.7238 -6.2984 2.0694 17 6 7.2302 -7.6584 0.0741 18 7 6.4590 -8.7577 0.6598 19 6 6.7249 -10.0308 0.3061 20 8 7.6016 -10.2665 -0.5031 21 6 5.9715 -11.1054 0.8791 22 6 5.3523 -11.9867 1.3441 23 6 4.5772 -13.0914 1.9327 24 6 3.3368 -13.5669 1.1738 25 6 3.1814 -12.7677 2.4693 26 6 5.4224 -5.8325 0.0001 27 1 -0.4851 0.8401 0.0004 28 1 3.6438 -3.4314 -0.8904 29 1 3.6432 -3.4319 0.8896 30 1 8.1014 -4.5851 0.6543 31 1 7.7945 -5.2789 -0.9972 32 1 6.2828 -7.0571 2.4756 33 1 8.2852 -7.7848 0.3171 34 1 7.1037 -7.6624 -1.0086 35 1 5.7576 -8.5694 1.3028 36 1 5.1599 -13.8423 2.4662 37 1 3.0942 -13.0616 0.2389 38 1 3.1031 -14.6310 1.2078 39 1 2.8457 -13.3061 3.3556 40 1 2.8368 -11.7370 2.3862 41 1 5.2424 -6.2334 -0.9974 42 1 4.5549 -5.9131 0.6551 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042958304.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:47 Heat of formation + Delta-G solvation = 4.767966 kcal Electronic energy + Delta-G solvation = -24986.450811 eV Core-core repulsion = 21062.093467 eV Total energy + Delta-G solvation = -3924.357344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.06807 -39.89226 -38.23116 -38.13394 -35.72502 -34.85524 -33.28203 -32.46424 -30.87105 -29.11628 -26.74679 -26.48860 -25.60988 -24.68943 -23.06476 -22.33239 -21.20888 -19.80002 -19.31810 -17.75668 -17.49735 -17.07407 -16.95000 -16.41566 -16.07041 -15.82155 -15.54242 -15.44527 -14.97611 -14.66528 -14.52785 -14.08642 -13.79094 -13.59573 -13.23272 -13.20422 -12.88705 -12.77519 -12.62694 -12.31572 -12.19807 -12.05540 -11.89405 -11.43053 -11.26958 -11.02451 -10.92392 -10.70726 -10.64610 -10.63027 -10.30737 -9.87466 -9.78881 -9.52360 -9.02645 -8.78057 -8.52873 -6.94857 -6.31251 -4.03307 1.00143 1.61176 2.37650 2.49296 2.88530 2.92592 3.03975 3.31649 3.32313 3.35404 3.48923 3.49473 3.54674 3.77079 4.09922 4.11739 4.27862 4.29842 4.33814 4.40525 4.65629 4.82029 4.97594 4.98608 5.03562 5.07522 5.08402 5.12626 5.16426 5.22330 5.35724 5.41328 5.42642 5.43440 5.62131 5.73346 5.81858 5.97006 6.66607 6.72189 7.02562 7.51364 7.62152 7.91702 8.36563 8.38671 9.14857 10.77887 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013616 B = 0.002021 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.971362 B =13850.197735 C =15510.027668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.115 4.115 11 C 0.558 3.442 12 O -0.514 6.514 13 N -0.642 5.642 14 C 0.128 3.872 15 C 0.083 3.917 16 O -0.521 6.521 17 C 0.103 3.897 18 N -0.720 5.720 19 C 0.641 3.359 20 O -0.516 6.516 21 C -0.226 4.226 22 C -0.040 4.040 23 C -0.072 4.072 24 C -0.159 4.159 25 C -0.158 4.158 26 C 0.077 3.923 27 H 0.271 0.729 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.377 0.623 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.403 0.597 36 H 0.137 0.863 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.740 -28.514 4.269 30.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.266 4.266 11 C 0.348 3.652 12 O -0.388 6.388 13 N -0.381 5.381 14 C 0.005 3.995 15 C 0.040 3.960 16 O -0.326 6.326 17 C -0.021 4.021 18 N -0.373 5.373 19 C 0.428 3.572 20 O -0.393 6.393 21 C -0.229 4.229 22 C -0.042 4.042 23 C -0.089 4.089 24 C -0.195 4.195 25 C -0.195 4.195 26 C -0.047 4.047 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.225 0.775 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.238 0.762 36 H 0.155 0.845 37 H 0.120 0.880 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.595 -26.338 3.575 28.998 hybrid contribution -1.505 -0.835 0.348 1.756 sum 10.089 -27.172 3.923 29.249 Atomic orbital electron populations 1.69934 1.05900 1.27800 1.48006 1.24710 0.94468 0.98987 0.93144 0.86733 0.81914 0.83234 0.79968 1.19176 1.19885 1.15905 1.22296 0.88166 0.97531 1.58882 0.89409 1.84816 1.09381 0.99818 1.97420 1.23208 0.93419 1.04322 1.05627 1.19962 0.90482 0.80060 0.74713 1.90719 1.58924 1.40756 1.48357 1.49682 1.08286 1.04265 1.75861 1.23077 0.87904 0.88153 1.00388 1.23097 0.96762 0.93519 0.82657 1.86685 1.80754 1.49100 1.16081 1.22026 0.97076 0.83559 0.99425 1.45695 1.39271 1.05414 1.46892 1.14534 0.81573 0.80516 0.80617 1.90896 1.31469 1.83994 1.32897 1.20406 1.00951 0.98154 1.03421 1.21374 0.94231 0.94445 0.94139 1.18982 0.89192 0.95935 1.04812 1.23130 0.98005 1.01566 0.96840 1.23144 0.95582 1.02387 0.98391 1.23947 0.97482 0.81665 1.01577 0.91911 0.88657 0.88581 0.88634 0.88005 0.77509 0.89229 0.88966 0.76223 0.84493 0.87964 0.87218 0.87195 0.87887 0.88516 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.47 13.97 55.49 0.78 -25.69 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.83 27.74 -169.99 -4.71 17.12 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 7 C -0.52 -15.02 10.04 30.94 0.31 -14.71 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.61 18.55 -107.50 -1.99 -5.61 16 10 C -0.12 -2.29 5.91 36.01 0.21 -2.07 16 11 C 0.56 10.42 8.08 -10.98 -0.09 10.34 16 12 O -0.51 -11.60 16.59 5.56 0.09 -11.51 16 13 N -0.64 -8.59 3.61 -178.25 -0.64 -9.23 16 14 C 0.13 1.28 8.24 -2.97 -0.02 1.25 16 15 C 0.08 0.61 1.52 -89.68 -0.14 0.47 16 16 O -0.52 -4.29 13.51 -35.23 -0.48 -4.76 16 17 C 0.10 0.63 5.28 -4.05 -0.02 0.60 16 18 N -0.72 -4.16 5.33 -62.76 -0.33 -4.50 16 19 C 0.64 5.84 7.65 -14.33 -0.11 5.73 16 20 O -0.52 -6.65 17.09 5.27 0.09 -6.56 16 21 C -0.23 -1.91 13.61 -38.84 -0.53 -2.44 16 22 C -0.04 -0.28 13.47 -37.12 -0.50 -0.78 16 23 C -0.07 -0.31 6.22 -93.40 -0.58 -0.89 16 24 C -0.16 -0.53 10.21 -26.73 -0.27 -0.80 16 25 C -0.16 -0.49 10.21 -26.73 -0.27 -0.76 16 26 C 0.08 0.66 8.01 -2.96 -0.02 0.64 16 27 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.10 1.76 8.14 -51.91 -0.42 1.33 16 29 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 30 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.10 0.77 8.10 -51.93 -0.42 0.35 16 32 H 0.38 1.54 7.61 45.56 0.35 1.89 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.55 8.04 -51.93 -0.42 0.13 16 35 H 0.40 1.32 7.27 -40.82 -0.30 1.02 16 36 H 0.14 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.10 0.66 8.03 -51.93 -0.42 0.24 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 388.07 15.07 5.85 5.85 Total: -1.00 -39.09 388.07 -8.50 -47.59 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -5.01 Total: -1.96 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -2.13 Total: -0.73 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: -0.20 Total: -39.42 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.29 Total: -22.84 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.12 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -39.09 -8.50 -47.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042958304.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.353 kcal (2) G-P(sol) polarization free energy of solvation -39.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds