Wall clock time and date at job start Tue Mar 31 2020 21:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00198 * 2 1 4 4 H 1.48498 * 109.47445 * 270.00066 * 3 2 1 5 5 H 1.48501 * 109.47147 * 30.00232 * 3 2 1 6 6 H 1.48505 * 109.47313 * 149.99961 * 3 2 1 7 7 C 1.38804 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00025 * 0.02562 * 7 2 1 9 9 S 1.76203 * 119.99880 * 180.02562 * 7 2 1 10 10 C 1.81003 * 99.99924 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47180 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99415 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99966 * 179.97438 * 11 10 9 14 14 C 1.47578 * 134.49005 * 179.97438 * 13 11 10 15 15 C 1.53949 * 86.11491 * 155.36554 * 14 13 11 16 16 O 1.42900 * 113.74301 * 269.15741 * 15 14 13 17 17 C 1.52992 * 113.74237 * 137.95355 * 15 14 13 18 18 N 1.46499 * 109.47267 * 185.00160 * 17 15 14 19 19 C 1.34784 * 119.99971 * 180.02562 * 18 17 15 20 20 O 1.21614 * 119.99576 * 359.72702 * 19 18 17 21 21 C 1.43203 * 119.99825 * 179.97438 * 19 18 17 22 22 C 9.18946 * 133.55095 * 168.35210 * 10 1 2 23 23 C 8.93261 * 116.25023 * 166.04156 * 13 1 2 24 24 C 1.52996 * 117.50161 * 56.83660 * 23 22 21 25 25 C 1.53003 * 117.49999 * 348.21027 * 23 22 21 26 26 C 1.47571 * 134.49349 * 0.02562 * 13 11 10 27 27 H 0.97006 * 120.00278 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46792 * 59.99714 * 10 9 7 29 29 H 1.08997 * 109.47108 * 300.00066 * 10 9 7 30 30 H 1.09002 * 113.76818 * 41.06708 * 14 13 11 31 31 H 1.08997 * 113.87314 * 269.68078 * 14 13 11 32 32 H 0.96698 * 113.99896 * 178.07312 * 16 15 14 33 33 H 1.09004 * 109.47330 * 65.00064 * 17 15 14 34 34 H 1.09005 * 109.47124 * 305.00268 * 17 15 14 35 35 H 0.96999 * 119.99984 * 359.97438 * 18 17 15 36 36 H 1.08999 * 115.54843 * 202.54678 * 23 22 21 37 37 H 1.09006 * 117.49705 * 359.97438 * 24 23 22 38 38 H 1.08995 * 117.50278 * 145.02123 * 24 23 22 39 39 H 1.08998 * 117.49571 * 214.98161 * 25 23 22 40 40 H 1.08999 * 117.49851 * 0.02562 * 25 23 22 41 41 H 1.09000 * 113.77247 * 90.33115 * 26 13 11 42 42 H 1.09000 * 113.77279 * 318.93898 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 16 3.7722 -1.2021 0.0001 10 6 4.0865 -2.9846 -0.0001 11 6 5.5730 -3.2327 -0.0002 12 8 6.3439 -2.2964 0.0003 13 7 6.0456 -4.4948 0.0001 14 6 7.3942 -5.0942 -0.0004 15 6 6.7321 -6.3274 0.6407 16 8 6.7238 -6.2984 2.0694 17 6 7.2302 -7.6584 0.0741 18 7 6.4590 -8.7577 0.6598 19 6 6.7249 -10.0308 0.3061 20 8 7.6016 -10.2665 -0.5031 21 6 5.9715 -11.1054 0.8791 22 6 5.3523 -11.9867 1.3441 23 6 4.5772 -13.0914 1.9327 24 6 3.3368 -13.5669 1.1738 25 6 3.1814 -12.7677 2.4693 26 6 5.4224 -5.8325 0.0001 27 1 -0.4851 0.8401 0.0004 28 1 3.6438 -3.4314 -0.8904 29 1 3.6432 -3.4319 0.8896 30 1 8.1014 -4.5851 0.6543 31 1 7.7945 -5.2789 -0.9972 32 1 6.2828 -7.0571 2.4756 33 1 8.2852 -7.7848 0.3171 34 1 7.1037 -7.6624 -1.0086 35 1 5.7576 -8.5694 1.3028 36 1 5.1599 -13.8423 2.4662 37 1 3.0942 -13.0616 0.2389 38 1 3.1031 -14.6310 1.2078 39 1 2.8457 -13.3061 3.3556 40 1 2.8368 -11.7370 2.3862 41 1 5.2424 -6.2334 -0.9974 42 1 4.5549 -5.9131 0.6551 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042958304.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:46 Heat of formation + Delta-G solvation = -25.830222 kcal Electronic energy + Delta-G solvation = -24987.777648 eV Core-core repulsion = 21062.093467 eV Total energy + Delta-G solvation = -3925.684181 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.90407 -40.70534 -39.41048 -38.49348 -36.59639 -35.50705 -34.69590 -33.82454 -32.12995 -30.16651 -27.93873 -27.53547 -27.27669 -25.23788 -23.28404 -22.88719 -21.98121 -20.63961 -20.34092 -19.59922 -18.23366 -17.93454 -17.66344 -17.28856 -17.11415 -16.88563 -16.77454 -16.57404 -15.91567 -15.80312 -15.49825 -15.11182 -15.03202 -14.89131 -14.47994 -14.16730 -13.67883 -13.54857 -13.50096 -13.36178 -13.11992 -13.06663 -13.02726 -12.67130 -12.41900 -12.36708 -12.11788 -11.88627 -11.66034 -11.41345 -11.19197 -11.11878 -10.88877 -10.73245 -10.57448 -10.34745 -9.87019 -9.03862 -8.53684 -6.25268 0.39139 0.90905 1.08025 1.29870 1.40184 1.47209 1.50189 1.81371 1.89030 2.23249 2.33995 2.62174 2.74010 2.84459 2.92742 3.03188 3.14635 3.41597 3.51307 3.83835 3.90746 4.01586 4.03714 4.14140 4.31273 4.37098 4.42032 4.45896 4.49374 4.60415 4.65262 4.78583 4.79032 4.80955 4.98300 5.06481 5.09728 5.22167 5.68658 6.08786 6.11823 6.19203 6.44701 6.58260 6.91289 6.91374 6.99285 8.58557 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.013616 B = 0.002021 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.971362 B =13850.197735 C =15510.027668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.257 1.257 6 H -0.239 1.239 7 C -0.528 4.528 8 H 0.063 0.937 9 S -0.177 6.177 10 C -0.099 4.099 11 C 0.556 3.444 12 O -0.566 6.566 13 N -0.643 5.643 14 C 0.118 3.882 15 C 0.108 3.892 16 O -0.540 6.540 17 C 0.112 3.888 18 N -0.701 5.701 19 C 0.643 3.357 20 O -0.562 6.562 21 C -0.264 4.264 22 C -0.024 4.024 23 C -0.089 4.089 24 C -0.157 4.157 25 C -0.150 4.150 26 C 0.073 3.927 27 H 0.278 0.722 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.395 0.605 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.417 0.583 36 H 0.155 0.845 37 H 0.093 0.907 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.098 0.902 41 H 0.124 0.876 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.963 -30.444 4.735 32.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.181 1.181 6 H -0.163 1.163 7 C -0.675 4.675 8 H 0.082 0.918 9 S 0.050 5.950 10 C -0.250 4.250 11 C 0.345 3.655 12 O -0.445 6.445 13 N -0.378 5.378 14 C -0.004 4.004 15 C 0.065 3.935 16 O -0.349 6.349 17 C -0.012 4.012 18 N -0.354 5.354 19 C 0.430 3.570 20 O -0.442 6.442 21 C -0.267 4.267 22 C -0.026 4.026 23 C -0.106 4.106 24 C -0.194 4.194 25 C -0.187 4.187 26 C -0.049 4.049 27 H 0.087 0.913 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.099 0.901 31 H 0.149 0.851 32 H 0.246 0.754 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.254 0.746 36 H 0.172 0.828 37 H 0.112 0.888 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.117 0.883 41 H 0.142 0.858 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.783 -28.328 4.075 30.950 hybrid contribution -1.586 -0.487 0.257 1.679 sum 10.197 -28.816 4.332 30.872 Atomic orbital electron populations 1.70004 1.07195 1.29067 1.48979 1.25543 0.95299 1.02196 0.92873 0.85883 0.80643 0.79696 0.80257 1.18640 1.18147 1.16288 1.22418 0.89952 0.96745 1.58426 0.91838 1.84765 1.06778 1.05905 1.97572 1.23145 0.95296 0.99600 1.06981 1.19619 0.89375 0.81443 0.75056 1.90691 1.59568 1.42860 1.51342 1.49691 1.10902 1.04022 1.73235 1.23458 0.86281 0.88507 1.02202 1.22705 0.95379 0.93036 0.82385 1.86657 1.81168 1.50598 1.16435 1.21934 0.96976 0.82460 0.99829 1.45525 1.39052 1.04411 1.46414 1.14630 0.80967 0.81347 0.80006 1.90868 1.33531 1.84726 1.35099 1.20462 1.02163 0.99137 1.04944 1.22042 0.93428 0.94127 0.92999 1.19294 0.89754 0.95760 1.05812 1.23231 0.96905 1.02641 0.96632 1.23246 0.94064 1.02422 0.98958 1.24377 0.98333 0.78564 1.03605 0.91292 0.87094 0.87333 0.90069 0.85099 0.75376 0.89223 0.87993 0.74577 0.82754 0.88849 0.85447 0.85381 0.88307 0.85802 0.87987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.45 13.97 21.65 0.30 -55.15 16 2 C 0.05 2.73 5.50 84.86 0.47 3.20 16 3 Si 0.91 45.19 27.74 68.60 1.90 47.09 16 4 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 6 H -0.24 -11.89 6.74 99.48 0.67 -11.22 16 7 C -0.53 -30.80 10.04 67.96 0.68 -30.12 16 8 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 9 S -0.18 -9.10 18.55 -56.49 -1.05 -10.15 16 10 C -0.10 -3.87 5.91 71.24 0.42 -3.45 16 11 C 0.56 20.33 8.08 87.66 0.71 21.04 16 12 O -0.57 -25.72 16.59 -3.03 -0.05 -25.77 16 13 N -0.64 -15.95 3.61 -840.08 -3.03 -18.98 16 14 C 0.12 2.11 8.24 86.48 0.71 2.82 16 15 C 0.11 1.30 1.52 -10.13 -0.02 1.28 16 16 O -0.54 -7.58 13.51 -148.98 -2.01 -9.59 16 17 C 0.11 1.07 5.28 86.38 0.46 1.52 16 18 N -0.70 -6.62 5.33 -470.73 -2.51 -9.13 16 19 C 0.64 11.10 7.65 85.49 0.65 11.75 16 20 O -0.56 -14.31 17.09 -4.08 -0.07 -14.38 16 21 C -0.26 -4.25 13.61 30.02 0.41 -3.84 16 22 C -0.02 -0.31 13.47 31.14 0.42 0.11 16 23 C -0.09 -0.59 6.22 -12.59 -0.08 -0.67 16 24 C -0.16 -0.73 10.21 30.59 0.31 -0.42 16 25 C -0.15 -0.58 10.21 30.60 0.31 -0.26 16 26 C 0.07 1.02 8.01 86.49 0.69 1.71 16 27 H 0.28 15.54 8.31 -92.70 -0.77 14.77 16 28 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 29 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.13 1.62 8.10 -2.39 -0.02 1.60 16 32 H 0.39 2.13 7.61 -74.06 -0.56 1.57 16 33 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.10 0.89 8.04 -2.38 -0.02 0.87 16 35 H 0.42 1.65 7.27 -92.71 -0.67 0.97 16 36 H 0.16 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.13 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.12 1.17 8.03 -2.39 -0.02 1.16 16 42 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -86.95 388.07 -0.56 -87.51 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -0.20 Total: 3.85 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 6.15 Total: 4.69 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -5.24 Total: -83.26 kcal Atomic # 8 Polarization: -47.61 SS G_CDS: -2.13 Total: -49.74 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Atomic # 16 Polarization: -9.10 SS G_CDS: -1.05 Total: -10.15 kcal Total: -86.95 -0.56 -87.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042958304.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.681 kcal (2) G-P(sol) polarization free energy of solvation -86.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds