Wall clock time and date at job start Tue Mar 31 2020 20:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21283 * 120.00463 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 F 1.39898 * 109.47431 * 55.27777 * 5 3 2 7 7 F 1.39900 * 109.47316 * 175.27886 * 5 3 2 8 8 C 1.46497 * 120.00129 * 179.97438 * 2 1 3 9 9 H 1.09003 * 110.89215 * 177.57732 * 8 2 1 10 10 C 1.54913 * 111.00470 * 301.45837 * 8 2 1 11 11 N 1.47418 * 104.83566 * 155.08399 * 10 8 2 12 12 C 1.34779 * 125.65480 * 155.90623 * 11 10 8 13 13 O 1.21282 * 119.99613 * 0.02562 * 12 11 10 14 14 C 1.50691 * 120.00429 * 179.97438 * 12 11 10 15 15 S 1.81001 * 109.47179 * 180.02562 * 14 12 11 16 16 C 1.76209 * 99.99956 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99633 * 359.97438 * 16 15 14 18 18 C 1.38801 * 119.99747 * 179.97438 * 16 15 14 19 19 N 1.31628 * 119.99779 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00093 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47184 * 90.00012 * 20 18 16 22 22 H 1.48500 * 109.47293 * 209.99903 * 20 18 16 23 23 H 1.48504 * 109.47425 * 329.99979 * 20 18 16 24 24 C 1.47021 * 108.70048 * 335.86646 * 11 10 8 25 25 C 1.54320 * 107.27223 * 1.06631 * 24 11 10 26 26 H 1.09009 * 110.71484 * 263.82553 * 25 24 11 27 27 O 1.42905 * 110.72232 * 140.55497 * 25 24 11 28 28 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 29 29 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 30 30 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 31 31 H 1.09004 * 109.47439 * 295.27683 * 5 3 2 32 32 H 1.09005 * 110.36502 * 273.92255 * 10 8 2 33 33 H 1.09001 * 110.36599 * 36.23873 * 10 8 2 34 34 H 1.09001 * 109.47717 * 300.00353 * 14 12 11 35 35 H 1.09001 * 109.47371 * 60.00021 * 14 12 11 36 36 H 0.97000 * 120.00090 * 180.02562 * 19 18 16 37 37 H 1.09007 * 109.88145 * 120.47715 * 24 11 10 38 38 H 1.08994 * 109.88633 * 241.64187 * 24 11 10 39 39 H 0.96692 * 114.00049 * 66.47788 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 9 0.4971 2.5032 1.0739 7 9 2.2902 3.5337 0.1034 8 6 2.1975 -1.2687 0.0006 9 1 3.2730 -1.0966 -0.0426 10 6 1.8215 -2.1264 1.2346 11 7 2.0991 -3.5157 0.8273 12 6 2.3641 -4.5408 1.6612 13 8 2.3876 -4.3569 2.8598 14 6 2.6300 -5.9157 1.1046 15 16 2.9493 -7.0661 2.4651 16 6 3.2206 -8.5497 1.5539 17 1 3.1611 -8.5396 0.4756 18 6 3.5106 -9.7312 2.2221 19 7 3.7138 -10.8394 1.5415 20 14 3.6127 -9.7486 4.0872 21 1 2.2730 -10.0480 4.6535 22 1 4.5775 -10.7911 4.5205 23 1 4.0688 -8.4206 4.5705 24 6 2.0380 -3.5982 -0.6393 25 6 1.7321 -2.1801 -1.1656 26 1 0.6642 -2.0584 -1.3477 27 8 2.4828 -1.9078 -2.3507 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 0.8276 2.5653 -0.9382 32 1 2.4386 -1.8513 2.0900 33 1 0.7649 -2.0049 1.4734 34 1 1.7609 -6.2535 0.5400 35 1 3.4987 -5.8798 0.4472 36 1 3.9161 -11.6652 2.0084 37 1 2.9956 -3.9405 -1.0316 38 1 1.2457 -4.2839 -0.9394 39 1 2.2305 -2.4512 -3.1096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047972699.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:13 Heat of formation + Delta-G solvation = -192.973637 kcal Electronic energy + Delta-G solvation = -27135.156792 eV Core-core repulsion = 22647.995199 eV Total energy + Delta-G solvation = -4487.161593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.77107 -47.77820 -40.98666 -39.64619 -38.14076 -36.22889 -35.45522 -32.48428 -31.43790 -29.36709 -28.98575 -28.21113 -27.09351 -25.65744 -23.74928 -22.07623 -20.32252 -19.77970 -19.01467 -18.31453 -18.01102 -17.81171 -17.71235 -17.14071 -16.48321 -15.94288 -15.73280 -15.45030 -15.18733 -14.98355 -14.56313 -14.39533 -14.28993 -14.27370 -13.91210 -13.72018 -13.52965 -13.31932 -12.99370 -12.89719 -12.82771 -12.72310 -12.58912 -12.33821 -12.07750 -11.31526 -11.25682 -11.04321 -10.83585 -10.68750 -10.44314 -9.90980 -9.70271 -9.44678 -9.04638 -8.79462 -8.56299 -6.98118 -6.33211 -4.05851 1.55715 1.79595 2.53686 2.78174 3.01426 3.12571 3.29853 3.34342 3.47410 3.49206 3.57550 3.90868 3.97805 4.05989 4.13339 4.29259 4.38918 4.46838 4.58637 4.67324 4.77153 4.80564 5.03930 5.05918 5.11262 5.23377 5.35193 5.42413 5.46095 5.65991 5.68977 5.91353 6.06085 6.44535 7.09153 7.19194 7.32246 7.89687 8.25241 8.36726 9.12783 10.75906 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.026892 B = 0.002310 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.948650 B =12118.347151 C =12616.929643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.589 5.589 3 C 0.477 3.523 4 O -0.491 6.491 5 C 0.262 3.738 6 F -0.183 7.183 7 F -0.173 7.173 8 C 0.134 3.866 9 H 0.130 0.870 10 C 0.102 3.898 11 N -0.621 5.621 12 C 0.550 3.450 13 O -0.510 6.510 14 C -0.118 4.118 15 S -0.140 6.140 16 C -0.522 4.522 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.879 5.879 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.071 3.929 25 C 0.086 3.914 26 H 0.082 0.918 27 O -0.549 6.549 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.139 0.861 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.271 0.729 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.873 25.333 -9.938 29.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.323 5.323 3 C 0.260 3.740 4 O -0.363 6.363 5 C 0.205 3.795 6 F -0.165 7.165 7 F -0.154 7.154 8 C 0.030 3.970 9 H 0.148 0.852 10 C -0.022 4.022 11 N -0.360 5.360 12 C 0.339 3.661 13 O -0.383 6.383 14 C -0.268 4.268 15 S 0.086 5.914 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.516 5.516 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.053 4.053 25 C 0.025 3.975 26 H 0.099 0.901 27 O -0.354 6.354 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.156 0.844 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -9.817 25.798 -7.676 28.650 hybrid contribution -0.400 -0.963 -1.094 1.511 sum -10.217 24.835 -8.770 28.250 Atomic orbital electron populations 1.22387 0.78277 1.06030 1.03165 1.47521 1.07572 1.04863 1.72329 1.21072 0.88777 0.85705 0.78494 1.90853 1.12833 1.86162 1.46459 1.21587 0.82594 0.84688 0.90646 1.92980 1.68305 1.96441 1.58745 1.93081 1.68665 1.56804 1.96860 1.22293 0.99734 0.81733 0.93273 0.85233 1.22386 1.01914 0.80920 0.96979 1.48204 1.72975 1.08372 1.06442 1.20062 0.75336 0.84855 0.85866 1.90730 1.49622 1.83496 1.14489 1.23253 1.05333 0.93841 1.04397 1.84835 1.92578 1.04135 1.09863 1.22286 1.55911 0.92558 0.96174 0.89351 1.24709 0.93213 0.94312 0.99044 1.69932 1.45688 0.99642 1.36298 0.86739 0.79344 0.80621 0.85179 1.19185 1.19873 1.15898 1.22776 1.03637 0.97566 0.81355 1.23120 0.95578 0.92837 0.85990 0.90069 1.86606 1.63192 1.64862 1.20746 0.91437 0.89491 0.88678 0.84398 0.88980 0.90609 0.88460 0.88343 0.91882 0.89555 0.90145 0.76690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.16 8.92 59.84 0.53 0.69 16 2 N -0.59 -4.38 2.91 -171.49 -0.50 -4.88 16 3 C 0.48 4.45 7.53 -10.98 -0.08 4.36 16 4 O -0.49 -6.81 16.00 5.55 0.09 -6.72 16 5 C 0.26 1.63 4.90 36.01 0.18 1.81 16 6 F -0.18 -1.19 14.89 2.25 0.03 -1.15 16 7 F -0.17 -1.60 16.95 2.25 0.04 -1.56 16 8 C 0.13 1.24 3.18 -65.78 -0.21 1.03 16 9 H 0.13 1.57 7.01 -51.93 -0.36 1.21 16 10 C 0.10 1.09 6.48 -2.53 -0.02 1.08 16 11 N -0.62 -7.88 3.33 -170.53 -0.57 -8.45 16 12 C 0.55 9.66 7.87 -10.99 -0.09 9.57 16 13 O -0.51 -10.90 16.12 5.56 0.09 -10.81 16 14 C -0.12 -2.22 5.35 36.00 0.19 -2.03 16 15 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 16 C -0.52 -14.77 10.04 30.94 0.31 -14.46 16 17 H 0.09 2.60 8.03 -52.49 -0.42 2.17 16 18 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 19 N -0.88 -26.20 13.97 55.49 0.78 -25.42 16 20 Si 0.86 21.56 27.74 -169.99 -4.71 16.84 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 24 C 0.07 0.63 6.26 -3.07 -0.02 0.61 16 25 C 0.09 0.60 3.89 -24.90 -0.10 0.51 16 26 H 0.08 0.38 7.06 -51.92 -0.37 0.02 16 27 O -0.55 -4.08 13.39 -35.23 -0.47 -4.55 16 28 H 0.07 0.12 8.08 -51.93 -0.42 -0.30 16 29 H 0.09 0.29 6.30 -51.93 -0.33 -0.03 16 30 H 0.09 0.28 5.10 -51.93 -0.26 0.01 16 31 H 0.14 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 1.16 8.04 -51.93 -0.42 0.74 16 33 H 0.08 0.68 6.28 -51.93 -0.33 0.35 16 34 H 0.10 1.67 8.14 -51.91 -0.42 1.25 16 35 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.09 0.80 8.06 -51.93 -0.42 0.39 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.38 1.15 9.12 45.56 0.42 1.57 16 LS Contribution 348.64 15.07 5.25 5.25 Total: -1.00 -38.12 348.64 -5.12 -43.24 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -3.76 Total: -2.15 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 0.61 Total: 5.86 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: -0.29 Total: -38.75 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.29 Total: -22.07 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.07 Total: -2.72 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.71 Total: 16.84 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -38.12 -5.12 -43.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047972699.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.735 kcal (2) G-P(sol) polarization free energy of solvation -38.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds