Wall clock time and date at job start Tue Mar 31 2020 20:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 119.99911 * 2 1 4 4 H 1.48503 * 109.46871 * 274.98689 * 3 2 1 5 5 H 1.48497 * 109.46879 * 34.98191 * 3 2 1 6 6 H 1.48497 * 109.47241 * 154.98451 * 3 2 1 7 7 C 1.38810 * 120.00451 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00163 * 172.69704 * 7 2 1 9 9 N 1.36941 * 119.99886 * 352.70070 * 7 2 1 10 10 C 1.46636 * 125.32784 * 5.23931 * 9 7 2 11 11 C 1.53696 * 108.01029 * 180.82097 * 10 9 7 12 12 H 1.09005 * 113.05228 * 253.81425 * 11 10 9 13 13 C 1.53718 * 109.34133 * 127.55834 * 11 10 9 14 14 N 1.46666 * 107.94480 * 266.25476 * 13 11 10 15 15 C 1.34775 * 125.34118 * 180.54656 * 14 13 11 16 16 O 1.21571 * 119.99950 * 5.77063 * 15 14 13 17 17 C 1.47694 * 120.00517 * 185.76527 * 15 14 13 18 18 C 1.39674 * 120.15539 * 38.70813 * 17 15 14 19 19 C 1.37851 * 119.90091 * 180.02562 * 18 17 15 20 20 C 1.38453 * 120.23179 * 359.97438 * 19 18 17 21 21 C 1.38302 * 120.32318 * 0.02562 * 20 19 18 22 22 Cl 1.73602 * 119.95068 * 179.72823 * 21 20 19 23 23 C 1.38432 * 120.09713 * 0.02562 * 21 20 19 24 24 F 1.35098 * 120.11970 * 179.97438 * 23 21 20 25 25 C 1.46776 * 109.32046 * 0.80898 * 14 13 11 26 26 C 1.54161 * 106.52594 * 341.09002 * 25 14 13 27 27 H 1.09001 * 113.83365 * 265.67936 * 26 25 14 28 28 C 1.46746 * 125.33003 * 185.22678 * 9 7 2 29 29 H 0.96996 * 120.00707 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.75823 * 61.18087 * 10 9 7 31 31 H 1.09002 * 109.76859 * 300.46430 * 10 9 7 32 32 H 1.09008 * 109.77324 * 146.63149 * 13 11 10 33 33 H 1.09002 * 109.77563 * 25.87904 * 13 11 10 34 34 H 1.07996 * 120.04889 * 0.04088 * 18 17 15 35 35 H 1.08000 * 119.88571 * 179.97438 * 19 18 17 36 36 H 1.07993 * 119.83919 * 180.02562 * 20 19 18 37 37 H 1.08995 * 110.02756 * 100.51336 * 25 14 13 38 38 H 1.09008 * 110.02584 * 221.92660 * 25 14 13 39 39 H 1.08993 * 110.01148 * 42.35514 * 28 9 7 40 40 H 1.09003 * 110.00128 * 280.99040 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4122 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0837 -1.2059 -0.1183 9 7 1.3340 -2.3832 0.1517 10 6 -0.1244 -2.5235 0.2124 11 6 -0.4509 -4.0126 0.4078 12 1 -0.8429 -4.4853 -0.4927 13 6 -1.3888 -4.1740 1.6150 14 7 -0.5625 -4.4434 2.7964 15 6 -1.0296 -4.6528 4.0431 16 8 -2.2270 -4.7307 4.2385 17 6 -0.0869 -4.7878 5.1721 18 6 1.0556 -3.9865 5.2318 19 6 1.9322 -4.1173 6.2876 20 6 1.6839 -5.0398 7.2897 21 6 0.5555 -5.8380 7.2400 22 17 0.2573 -6.9966 8.4981 23 6 -0.3333 -5.7188 6.1854 24 9 -1.4354 -6.4986 6.1362 25 6 0.8533 -4.4428 2.4092 26 6 0.8899 -4.6402 0.8807 27 1 1.0108 -5.6790 0.5735 28 6 1.9552 -3.7066 0.2782 29 1 -0.4851 0.8399 -0.0004 30 1 -0.5678 -2.1679 -0.7177 31 1 -0.5156 -1.9473 1.0510 32 1 -2.0701 -5.0075 1.4437 33 1 -1.9584 -3.2568 1.7647 34 1 1.2518 -3.2655 4.4521 35 1 2.8157 -3.4979 6.3333 36 1 2.3747 -5.1367 8.1141 37 1 1.3130 -3.4915 2.6767 38 1 1.3756 -5.2623 2.9030 39 1 2.8197 -3.6512 0.9396 40 1 2.2587 -4.0713 -0.7032 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049023227.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:35 Heat of formation + Delta-G solvation = -19.032282 kcal Electronic energy + Delta-G solvation = -27258.196610 eV Core-core repulsion = 23207.303199 eV Total energy + Delta-G solvation = -4050.893411 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.11507 -40.55758 -39.15715 -38.01784 -36.79637 -35.03560 -32.52093 -31.71709 -30.78311 -30.08533 -29.51144 -25.91486 -25.61951 -24.38254 -23.04172 -22.60833 -20.18690 -19.98806 -19.38042 -17.91408 -17.43671 -16.92446 -16.82806 -16.41020 -15.86711 -15.54415 -15.02855 -14.93621 -14.60877 -14.33099 -13.80282 -13.54729 -13.33033 -13.28232 -13.05127 -12.80523 -12.61271 -12.13053 -12.08879 -11.91124 -11.78134 -11.53895 -11.39444 -11.35795 -10.97349 -10.87010 -10.50028 -10.19287 -10.15289 -9.94365 -9.90327 -9.72224 -9.32424 -9.03179 -8.65340 -8.42661 -6.91752 -5.81384 -3.14403 0.41128 0.65219 1.63097 2.60096 2.99928 3.27510 3.34112 3.39894 3.42140 3.74081 4.21279 4.42331 4.48909 4.55004 4.72156 4.78026 4.90563 5.12402 5.19785 5.41532 5.44202 5.50756 5.51649 5.57223 5.62178 5.72105 5.80297 5.88639 5.90475 6.09192 6.20268 6.25670 6.27839 6.45634 6.49111 6.54008 6.72968 7.47155 7.49641 7.60758 7.73784 8.15427 8.18183 9.13385 9.74303 10.37932 11.30278 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.003226 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.732940 B = 8676.354248 C = 9432.712298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.004 4.004 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.234 4.234 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.183 3.817 11 C -0.122 4.122 12 H 0.092 0.908 13 C 0.121 3.879 14 N -0.598 5.598 15 C 0.572 3.428 16 O -0.528 6.528 17 C -0.147 4.147 18 C -0.053 4.053 19 C -0.122 4.122 20 C -0.064 4.064 21 C -0.086 4.086 22 Cl -0.048 7.048 23 C 0.159 3.841 24 F -0.110 7.110 25 C 0.108 3.892 26 C -0.111 4.111 27 H 0.091 0.909 28 C 0.145 3.855 29 H 0.253 0.747 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.039 0.961 40 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.351 -12.401 12.122 17.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.200 4.200 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.362 4.362 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.058 3.942 11 C -0.142 4.142 12 H 0.111 0.889 13 C -0.001 4.001 14 N -0.331 5.331 15 C 0.359 3.641 16 O -0.406 6.406 17 C -0.151 4.151 18 C -0.071 4.071 19 C -0.140 4.140 20 C -0.082 4.082 21 C -0.113 4.113 22 Cl -0.019 7.019 23 C 0.138 3.862 24 F -0.088 7.088 25 C -0.014 4.014 26 C -0.131 4.131 27 H 0.109 0.891 28 C 0.019 3.981 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.171 0.829 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 3.536 -12.352 12.389 17.848 hybrid contribution 0.231 0.696 0.054 0.735 sum 3.767 -11.656 12.443 17.461 Atomic orbital electron populations 1.69958 1.04928 1.25226 1.56302 1.24817 0.95656 0.97710 1.01865 0.86156 0.78709 0.83661 0.77555 1.21644 1.21630 1.20593 1.19005 0.91166 0.82393 1.43600 0.90348 1.44219 1.01442 1.01088 1.86144 1.21144 0.84722 0.86972 1.01377 1.23164 0.93908 1.00866 0.96281 0.88933 1.21888 0.93442 1.01187 0.83584 1.48103 1.08809 1.69039 1.07110 1.17462 0.87426 0.77799 0.81391 1.90826 1.15384 1.50545 1.83796 1.19993 0.98456 1.00023 0.96666 1.21692 0.90551 0.96523 0.98354 1.21195 1.00596 0.98766 0.93436 1.21167 0.94527 0.93270 0.99272 1.20860 0.98487 0.99123 0.92857 1.98391 1.95855 1.57472 1.50163 1.17310 0.84159 0.91158 0.93612 1.91602 1.49655 1.71646 1.95878 1.22331 0.81574 1.01844 0.95700 1.22956 0.97324 0.99486 0.93354 0.89066 1.21168 0.93756 0.86197 0.96997 0.93629 0.93833 0.92869 0.91949 0.90561 0.82920 0.83423 0.83524 0.89912 0.91464 0.94291 0.96185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.69 10.30 55.49 0.57 -25.12 16 2 C 0.00 -0.10 5.48 -17.43 -0.10 -0.19 16 3 Si 0.91 21.05 29.56 -169.99 -5.02 16.03 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.23 -6.04 10.24 -15.06 -0.15 -6.20 16 8 H 0.08 1.96 7.84 -52.49 -0.41 1.55 16 9 N -0.60 -13.93 3.37 -171.93 -0.58 -14.51 16 10 C 0.18 4.06 4.76 -3.61 -0.02 4.04 16 11 C -0.12 -2.07 4.02 -88.61 -0.36 -2.42 16 12 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 13 C 0.12 2.02 6.24 -3.58 -0.02 2.00 16 14 N -0.60 -9.71 3.31 -173.34 -0.57 -10.28 16 15 C 0.57 9.83 7.33 -12.40 -0.09 9.74 16 16 O -0.53 -10.83 16.54 5.30 0.09 -10.74 16 17 C -0.15 -2.08 5.38 -104.92 -0.56 -2.64 16 18 C -0.05 -0.60 8.33 -39.19 -0.33 -0.93 16 19 C -0.12 -1.04 10.03 -39.64 -0.40 -1.44 16 20 C -0.06 -0.54 9.82 -39.48 -0.39 -0.93 16 21 C -0.09 -0.95 6.32 -39.49 -0.25 -1.20 16 22 Cl -0.05 -0.49 28.61 -51.86 -1.48 -1.98 16 23 C 0.16 2.19 7.22 -38.93 -0.28 1.91 16 24 F -0.11 -1.73 15.78 2.25 0.04 -1.69 16 25 C 0.11 1.55 4.56 -3.28 -0.01 1.54 16 26 C -0.11 -1.67 4.19 -88.25 -0.37 -2.04 16 27 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 28 C 0.15 2.62 6.37 -3.42 -0.02 2.60 16 29 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.04 1.10 7.56 -51.93 -0.39 0.71 16 31 H 0.05 1.34 6.42 -51.93 -0.33 1.00 16 32 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 33 H 0.08 1.40 7.44 -51.93 -0.39 1.02 16 34 H 0.15 1.78 5.80 -52.49 -0.30 1.47 16 35 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 37 H 0.08 1.29 6.12 -51.93 -0.32 0.98 16 38 H 0.07 0.81 7.64 -51.92 -0.40 0.41 16 39 H 0.04 0.66 7.94 -51.93 -0.41 0.25 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 342.81 15.07 5.17 5.17 Total: -1.00 -31.10 342.81 -9.78 -40.87 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -4.63 Total: -1.57 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -3.35 Total: 3.83 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.58 Total: -49.91 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.48 Total: -1.98 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.10 -9.78 -40.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049023227.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.840 kcal (2) G-P(sol) polarization free energy of solvation -31.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds