Wall clock time and date at job start Tue Mar 31 2020 20:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 119.99911 * 2 1 4 4 H 1.48503 * 109.46871 * 274.98689 * 3 2 1 5 5 H 1.48497 * 109.46879 * 34.98191 * 3 2 1 6 6 H 1.48497 * 109.47241 * 154.98451 * 3 2 1 7 7 C 1.38810 * 120.00451 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00163 * 172.69704 * 7 2 1 9 9 N 1.36941 * 119.99886 * 352.70070 * 7 2 1 10 10 C 1.46636 * 125.32784 * 5.23931 * 9 7 2 11 11 C 1.53696 * 108.01029 * 180.82097 * 10 9 7 12 12 H 1.09005 * 113.05228 * 253.81425 * 11 10 9 13 13 C 1.53718 * 109.34133 * 127.55834 * 11 10 9 14 14 N 1.46666 * 107.94480 * 266.25476 * 13 11 10 15 15 C 1.34775 * 125.34118 * 180.54656 * 14 13 11 16 16 O 1.21571 * 119.99950 * 5.77063 * 15 14 13 17 17 C 1.47694 * 120.00517 * 185.76527 * 15 14 13 18 18 C 1.39674 * 120.15539 * 38.70813 * 17 15 14 19 19 C 1.37851 * 119.90091 * 180.02562 * 18 17 15 20 20 C 1.38453 * 120.23179 * 359.97438 * 19 18 17 21 21 C 1.38302 * 120.32318 * 0.02562 * 20 19 18 22 22 Cl 1.73602 * 119.95068 * 179.72823 * 21 20 19 23 23 C 1.38432 * 120.09713 * 0.02562 * 21 20 19 24 24 F 1.35098 * 120.11970 * 179.97438 * 23 21 20 25 25 C 1.46776 * 109.32046 * 0.80898 * 14 13 11 26 26 C 1.54161 * 106.52594 * 341.09002 * 25 14 13 27 27 H 1.09001 * 113.83365 * 265.67936 * 26 25 14 28 28 C 1.46746 * 125.33003 * 185.22678 * 9 7 2 29 29 H 0.96996 * 120.00707 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.75823 * 61.18087 * 10 9 7 31 31 H 1.09002 * 109.76859 * 300.46430 * 10 9 7 32 32 H 1.09008 * 109.77324 * 146.63149 * 13 11 10 33 33 H 1.09002 * 109.77563 * 25.87904 * 13 11 10 34 34 H 1.07996 * 120.04889 * 0.04088 * 18 17 15 35 35 H 1.08000 * 119.88571 * 179.97438 * 19 18 17 36 36 H 1.07993 * 119.83919 * 180.02562 * 20 19 18 37 37 H 1.08995 * 110.02756 * 100.51336 * 25 14 13 38 38 H 1.09008 * 110.02584 * 221.92660 * 25 14 13 39 39 H 1.08993 * 110.01148 * 42.35514 * 28 9 7 40 40 H 1.09003 * 110.00128 * 280.99040 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4122 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0837 -1.2059 -0.1183 9 7 1.3340 -2.3832 0.1517 10 6 -0.1244 -2.5235 0.2124 11 6 -0.4509 -4.0126 0.4078 12 1 -0.8429 -4.4853 -0.4927 13 6 -1.3888 -4.1740 1.6150 14 7 -0.5625 -4.4434 2.7964 15 6 -1.0296 -4.6528 4.0431 16 8 -2.2270 -4.7307 4.2385 17 6 -0.0869 -4.7878 5.1721 18 6 1.0556 -3.9865 5.2318 19 6 1.9322 -4.1173 6.2876 20 6 1.6839 -5.0398 7.2897 21 6 0.5555 -5.8380 7.2400 22 17 0.2573 -6.9966 8.4981 23 6 -0.3333 -5.7188 6.1854 24 9 -1.4354 -6.4986 6.1362 25 6 0.8533 -4.4428 2.4092 26 6 0.8899 -4.6402 0.8807 27 1 1.0108 -5.6790 0.5735 28 6 1.9552 -3.7066 0.2782 29 1 -0.4851 0.8399 -0.0004 30 1 -0.5678 -2.1679 -0.7177 31 1 -0.5156 -1.9473 1.0510 32 1 -2.0701 -5.0075 1.4437 33 1 -1.9584 -3.2568 1.7647 34 1 1.2518 -3.2655 4.4521 35 1 2.8157 -3.4979 6.3333 36 1 2.3747 -5.1367 8.1141 37 1 1.3130 -3.4915 2.6767 38 1 1.3756 -5.2623 2.9030 39 1 2.8197 -3.6512 0.9396 40 1 2.2587 -4.0713 -0.7032 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049023227.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:35 Heat of formation + Delta-G solvation = -37.100901 kcal Electronic energy + Delta-G solvation = -27258.980124 eV Core-core repulsion = 23207.303199 eV Total energy + Delta-G solvation = -4051.676925 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.17508 -41.81738 -40.25494 -39.28445 -37.63132 -36.62752 -34.19183 -32.90821 -31.65801 -31.38186 -31.11963 -27.53967 -27.06695 -25.69629 -24.05862 -23.77315 -21.82257 -21.16046 -20.77658 -19.08031 -18.68417 -18.39392 -17.88625 -17.70056 -16.99642 -16.71231 -16.50816 -16.06503 -15.89496 -15.67976 -15.47008 -14.71330 -14.52374 -14.42013 -14.34590 -14.08500 -13.70724 -13.62938 -13.31755 -13.21974 -13.13222 -12.78367 -12.65940 -12.63271 -12.53956 -12.19779 -11.96916 -11.90395 -11.83240 -11.51277 -11.36329 -11.22503 -10.63472 -10.22945 -9.90111 -9.74435 -8.83129 -7.82769 -5.16051 -0.48789 -0.20355 0.80097 1.46309 1.49339 1.49890 1.59196 1.79742 2.32439 2.52729 2.83192 3.11018 3.36608 3.42745 3.55081 3.70341 3.74902 3.86053 3.94871 4.01460 4.23074 4.26002 4.30532 4.51615 4.53097 4.67861 4.68708 4.73655 4.83322 4.89136 4.96629 5.06850 5.10183 5.11950 5.17505 5.39510 5.48816 5.54309 5.65172 5.80270 6.24420 6.31708 6.85378 7.14478 7.84376 8.45964 9.27741 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.003226 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.732940 B = 8676.354248 C = 9432.712298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.064 4.064 3 Si 0.970 3.030 4 H -0.292 1.292 5 H -0.301 1.301 6 H -0.262 1.262 7 C -0.234 4.234 8 H 0.088 0.912 9 N -0.621 5.621 10 C 0.196 3.804 11 C -0.111 4.111 12 H 0.114 0.886 13 C 0.124 3.876 14 N -0.599 5.599 15 C 0.566 3.434 16 O -0.575 6.575 17 C -0.166 4.166 18 C -0.055 4.055 19 C -0.101 4.101 20 C -0.044 4.044 21 C -0.087 4.087 22 Cl -0.043 7.043 23 C 0.134 3.866 24 F -0.131 7.131 25 C 0.111 3.889 26 C -0.095 4.095 27 H 0.132 0.868 28 C 0.140 3.860 29 H 0.243 0.757 30 H 0.001 0.999 31 H 0.013 0.987 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.148 0.852 35 H 0.186 0.814 36 H 0.186 0.814 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.056 0.944 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.790 -13.831 13.493 20.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.257 4.257 3 Si 0.800 3.200 4 H -0.220 1.220 5 H -0.228 1.228 6 H -0.186 1.186 7 C -0.363 4.363 8 H 0.106 0.894 9 N -0.348 5.348 10 C 0.071 3.929 11 C -0.131 4.131 12 H 0.132 0.868 13 C 0.001 3.999 14 N -0.330 5.330 15 C 0.355 3.645 16 O -0.456 6.456 17 C -0.170 4.170 18 C -0.073 4.073 19 C -0.119 4.119 20 C -0.062 4.062 21 C -0.115 4.115 22 Cl -0.014 7.014 23 C 0.112 3.888 24 F -0.109 7.109 25 C -0.011 4.011 26 C -0.114 4.114 27 H 0.150 0.850 28 C 0.015 3.985 29 H 0.053 0.947 30 H 0.020 0.980 31 H 0.031 0.969 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.166 0.834 35 H 0.204 0.796 36 H 0.203 0.797 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.074 0.926 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 7.038 -13.818 13.752 20.727 hybrid contribution -0.767 1.134 -0.353 1.414 sum 6.272 -12.684 13.400 19.488 Atomic orbital electron populations 1.70197 1.06402 1.25003 1.58344 1.25594 0.96354 1.00914 1.02868 0.85176 0.78151 0.79703 0.77016 1.21958 1.22784 1.18626 1.19426 0.91787 0.83545 1.41570 0.89378 1.44497 1.01958 1.02491 1.85831 1.20775 0.84445 0.90095 0.97582 1.22994 0.95498 0.97329 0.97258 0.86771 1.21757 0.93695 1.00361 0.84059 1.48176 1.09569 1.68417 1.06812 1.18041 0.87471 0.76735 0.82208 1.90785 1.17505 1.52754 1.84548 1.19797 0.99202 1.01955 0.96091 1.21731 0.90227 0.95930 0.99457 1.21600 1.00556 0.98139 0.91631 1.21643 0.93516 0.91308 0.99765 1.21030 0.98670 0.99591 0.92192 1.98396 1.95948 1.57419 1.49634 1.17592 0.84509 0.91791 0.94862 1.91540 1.50955 1.72319 1.96114 1.22405 0.80545 1.02536 0.95604 1.23017 0.94366 1.00719 0.93314 0.84983 1.21385 0.94895 0.84199 0.97987 0.94748 0.98049 0.96859 0.90582 0.93519 0.83441 0.79640 0.79725 0.91231 0.88093 0.92560 0.95272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.75 10.30 21.65 0.22 -55.53 16 2 C -0.06 -3.49 5.48 84.86 0.46 -3.03 16 3 Si 0.97 43.83 29.56 68.60 2.03 45.86 16 4 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.23 -12.10 10.24 84.03 0.86 -11.24 16 8 H 0.09 4.28 7.84 -2.91 -0.02 4.25 16 9 N -0.62 -28.69 3.37 -697.87 -2.35 -31.04 16 10 C 0.20 9.06 4.76 86.59 0.41 9.48 16 11 C -0.11 -3.70 4.02 -9.49 -0.04 -3.73 16 12 H 0.11 3.34 8.14 -2.38 -0.02 3.32 16 13 C 0.12 4.23 6.24 86.59 0.54 4.77 16 14 N -0.60 -19.37 3.31 -820.58 -2.72 -22.08 16 15 C 0.57 19.87 7.33 86.74 0.64 20.50 16 16 O -0.58 -24.76 16.54 -3.94 -0.07 -24.83 16 17 C -0.17 -4.59 5.38 -20.06 -0.11 -4.70 16 18 C -0.05 -1.13 8.33 22.53 0.19 -0.94 16 19 C -0.10 -1.30 10.03 22.23 0.22 -1.08 16 20 C -0.04 -0.56 9.82 22.34 0.22 -0.34 16 21 C -0.09 -1.73 6.32 22.33 0.14 -1.59 16 22 Cl -0.04 -0.80 28.61 -2.72 -0.08 -0.88 16 23 C 0.13 3.60 7.22 22.69 0.16 3.76 16 24 F -0.13 -4.23 15.78 44.97 0.71 -3.52 16 25 C 0.11 2.95 4.56 86.72 0.40 3.35 16 26 C -0.09 -2.58 4.19 -9.26 -0.04 -2.61 16 27 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 28 C 0.14 4.71 6.37 86.65 0.55 5.26 16 29 H 0.24 14.13 8.31 -92.71 -0.77 13.35 16 30 H 0.00 0.07 7.56 -2.39 -0.02 0.05 16 31 H 0.01 0.71 6.42 -2.39 -0.02 0.70 16 32 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 33 H 0.05 1.86 7.44 -2.39 -0.02 1.84 16 34 H 0.15 3.20 5.80 -2.91 -0.02 3.19 16 35 H 0.19 1.06 8.06 -2.91 -0.02 1.03 16 36 H 0.19 1.00 8.06 -2.91 -0.02 0.97 16 37 H 0.07 2.07 6.12 -2.39 -0.01 2.06 16 38 H 0.10 2.05 7.64 -2.38 -0.02 2.04 16 39 H 0.06 1.72 7.94 -2.39 -0.02 1.70 16 40 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -73.12 342.81 3.44 -69.68 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: 1.08 Total: 4.49 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 4.61 Total: 17.86 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -4.85 Total: -108.65 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.07 Total: -24.83 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.71 Total: -3.52 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.88 kcal Total: -73.12 3.44 -69.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049023227.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.578 kcal (2) G-P(sol) polarization free energy of solvation -73.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds