Wall clock time and date at job start Tue Mar 31 2020 20:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00653 * 2 1 4 4 H 1.48507 * 109.46987 * 240.00118 * 3 2 1 5 5 H 1.48501 * 109.46933 * 359.97438 * 3 2 1 6 6 H 1.48488 * 109.47350 * 119.99873 * 3 2 1 7 7 C 1.38815 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00277 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00252 * 0.02562 * 7 2 1 10 10 C 1.46769 * 125.34210 * 180.02562 * 9 7 2 11 11 C 1.53964 * 106.62684 * 161.50278 * 10 9 7 12 12 H 1.09000 * 113.01674 * 265.71552 * 11 10 9 13 13 C 1.54103 * 109.44525 * 138.17685 * 11 10 9 14 14 N 1.46745 * 106.63355 * 278.64095 * 13 11 10 15 15 C 1.34777 * 125.32759 * 161.58474 * 14 13 11 16 16 O 1.21561 * 119.99772 * 185.16204 * 15 14 13 17 17 C 1.47788 * 120.00042 * 5.16389 * 15 14 13 18 18 C 1.39623 * 120.11843 * 24.85820 * 17 15 14 19 19 C 1.37898 * 119.91412 * 180.02562 * 18 17 15 20 20 C 1.38485 * 120.16071 * 0.02562 * 19 18 17 21 21 Cl 1.73596 * 119.87759 * 179.97438 * 20 19 18 22 22 C 1.38693 * 120.24187 * 359.97438 * 20 19 18 23 23 F 1.35100 * 119.95962 * 179.71860 * 22 20 19 24 24 C 1.38132 * 120.08261 * 359.97438 * 22 20 19 25 25 C 1.46642 * 109.34040 * 341.31831 * 14 13 11 26 26 C 1.53693 * 108.00921 * 1.06575 * 25 14 13 27 27 H 1.08998 * 112.55539 * 254.08959 * 26 25 14 28 28 C 1.48239 * 125.13914 * 359.97307 * 9 7 2 29 29 H 0.97009 * 119.99392 * 0.02562 * 1 2 3 30 30 H 1.09005 * 110.02740 * 42.21404 * 10 9 7 31 31 H 1.09006 * 110.02670 * 280.79689 * 10 9 7 32 32 H 1.09002 * 110.14084 * 159.30223 * 13 11 10 33 33 H 1.08992 * 109.95620 * 37.88005 * 13 11 10 34 34 H 1.08001 * 120.04879 * 359.97438 * 18 17 15 35 35 H 1.08000 * 119.92186 * 180.02562 * 19 18 17 36 36 H 1.08001 * 120.08223 * 179.97438 * 24 22 20 37 37 H 1.09009 * 109.75599 * 120.70798 * 25 14 13 38 38 H 1.09000 * 109.75941 * 241.41913 * 25 14 13 39 39 H 1.09001 * 110.29924 * 61.06232 * 28 9 7 40 40 H 1.09002 * 110.03943 * 299.79302 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2126 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 1.9377 -3.7220 0.0016 11 6 0.8497 -4.7058 0.4692 12 1 0.8847 -4.9021 1.5409 13 6 0.9085 -5.9828 -0.3914 14 7 0.1885 -5.6847 -1.6349 15 6 0.2963 -6.3809 -2.7839 16 8 -0.2741 -5.9936 -3.7850 17 6 1.1079 -7.6153 -2.8266 18 6 1.3302 -8.3483 -1.6593 19 6 2.0886 -9.4992 -1.7039 20 6 2.6306 -9.9292 -2.9036 21 17 3.5847 -11.3787 -2.9512 22 6 2.4139 -9.2061 -4.0671 23 9 2.9501 -9.6278 -5.2332 24 6 1.6549 -8.0525 -4.0341 25 6 -0.6713 -4.5147 -1.4298 26 6 -0.4705 -4.0246 0.0130 27 1 -1.3148 -4.2672 0.6583 28 6 -0.1510 -2.5209 0.0006 29 1 -0.4850 0.8402 -0.0004 30 1 2.7823 -3.7445 0.6904 31 1 2.2686 -3.9817 -1.0040 32 1 0.4259 -6.8094 0.1300 33 1 1.9455 -6.2352 -0.6122 34 1 0.9096 -8.0141 -0.7224 35 1 2.2604 -10.0665 -0.8012 36 1 1.4865 -7.4892 -4.9400 37 1 -0.3933 -3.7260 -2.1291 38 1 -1.7142 -4.7923 -1.5830 39 1 -0.5720 -2.0621 -0.8941 40 1 -0.5686 -2.0476 0.8893 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049078817.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:56 Heat of formation + Delta-G solvation = -13.174996 kcal Electronic energy + Delta-G solvation = -26707.643401 eV Core-core repulsion = 22657.003981 eV Total energy + Delta-G solvation = -4050.639420 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.30311 -40.81287 -39.20708 -38.01352 -36.88347 -35.11857 -32.47667 -31.55367 -31.26215 -29.98352 -29.69193 -25.99803 -25.69477 -24.27133 -23.30893 -22.55317 -20.27835 -20.13837 -19.49302 -18.11964 -17.34571 -16.99985 -16.88918 -16.23783 -15.95288 -15.93289 -15.43937 -14.77489 -14.49442 -14.37765 -13.92936 -13.71807 -13.43053 -13.39850 -13.17642 -12.90186 -12.71349 -12.23155 -12.08210 -11.91311 -11.81770 -11.73166 -11.48223 -11.28454 -10.95991 -10.82424 -10.47829 -10.19380 -10.09210 -9.99987 -9.97315 -9.69138 -9.48579 -9.13443 -8.67521 -8.53424 -6.89329 -5.76665 -3.09967 0.18350 0.63563 1.53172 2.44023 2.84434 3.28922 3.38461 3.43148 3.44029 3.64846 4.16539 4.19144 4.43052 4.50603 4.65662 4.67744 4.84951 4.99931 5.13568 5.26049 5.33975 5.42437 5.48469 5.49519 5.52834 5.60088 5.66908 5.73674 5.84425 6.00715 6.13272 6.17320 6.24867 6.39583 6.53415 6.59448 6.75538 7.42742 7.50300 7.51840 7.74695 8.05642 8.18887 9.15453 9.77070 10.40532 11.35334 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.020062 B = 0.002578 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.364054 B =10856.475163 C =10988.737803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.146 3.854 11 C -0.110 4.110 12 H 0.102 0.898 13 C 0.102 3.898 14 N -0.599 5.599 15 C 0.569 3.431 16 O -0.531 6.531 17 C -0.088 4.088 18 C -0.099 4.099 19 C -0.088 4.088 20 C -0.057 4.057 21 Cl -0.046 7.046 22 C 0.104 3.896 23 F -0.123 7.123 24 C -0.087 4.087 25 C 0.118 3.882 26 C -0.124 4.124 27 H 0.090 0.910 28 C 0.187 3.813 29 H 0.254 0.746 30 H 0.036 0.964 31 H 0.017 0.983 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.181 -21.815 -0.703 21.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.019 3.981 11 C -0.129 4.129 12 H 0.120 0.880 13 C -0.021 4.021 14 N -0.331 5.331 15 C 0.357 3.643 16 O -0.408 6.408 17 C -0.091 4.091 18 C -0.117 4.117 19 C -0.107 4.107 20 C -0.085 4.085 21 Cl -0.017 7.017 22 C 0.084 3.916 23 F -0.101 7.101 24 C -0.107 4.107 25 C -0.003 4.003 26 C -0.143 4.143 27 H 0.108 0.892 28 C 0.063 3.937 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.034 0.966 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.176 0.824 35 H 0.168 0.832 36 H 0.174 0.826 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.927 -21.530 -1.368 21.659 hybrid contribution 0.693 0.641 -0.222 0.969 sum 2.619 -20.889 -1.590 21.113 Atomic orbital electron populations 1.69917 1.04871 1.25279 1.56974 1.24783 0.95738 0.97693 1.02081 0.86188 0.78473 0.83126 0.77905 1.21172 1.21565 1.21157 1.19001 0.90411 0.82399 1.44043 0.90507 1.44578 1.01329 0.99853 1.87335 1.21216 0.93751 0.85862 0.97240 1.23002 0.97283 0.93472 0.99191 0.88004 1.22371 0.96798 0.97952 0.84938 1.48118 1.43817 1.30380 1.10773 1.17652 0.81471 0.82929 0.82281 1.90818 1.47687 1.69275 1.33043 1.19869 0.99350 0.96404 0.93493 1.22022 0.96772 0.93801 0.99105 1.20961 0.96766 0.96619 0.96336 1.21255 1.00648 0.91986 0.94621 1.98402 1.69961 1.34606 1.98763 1.17191 0.98443 0.94896 0.81100 1.91566 1.83889 1.89424 1.45260 1.21204 0.95468 0.94368 0.99632 1.22069 0.93352 0.86962 0.97964 1.23164 0.97059 1.00343 0.93778 0.89218 1.21336 0.84355 0.86316 1.01694 0.93600 0.94613 0.96577 0.91203 0.90285 0.82407 0.83175 0.82554 0.90217 0.91792 0.92998 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.28 10.25 55.49 0.57 -25.71 16 2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.23 -6.24 10.25 -15.06 -0.15 -6.39 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -14.61 3.42 -170.56 -0.58 -15.19 16 10 C 0.15 2.76 6.49 -3.39 -0.02 2.74 16 11 C -0.11 -1.58 4.17 -88.26 -0.37 -1.94 16 12 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 13 C 0.10 1.16 4.23 -3.33 -0.01 1.14 16 14 N -0.60 -8.58 3.30 -173.40 -0.57 -9.16 16 15 C 0.57 8.54 7.63 -12.36 -0.09 8.45 16 16 O -0.53 -9.89 16.92 5.31 0.09 -9.80 16 17 C -0.09 -1.03 5.67 -104.97 -0.60 -1.62 16 18 C -0.10 -0.85 8.17 -39.19 -0.32 -1.17 16 19 C -0.09 -0.68 9.81 -39.61 -0.39 -1.06 16 20 C -0.06 -0.54 6.33 -39.32 -0.25 -0.79 16 21 Cl -0.05 -0.41 28.60 -51.86 -1.48 -1.89 16 22 C 0.10 1.12 7.26 -39.45 -0.29 0.83 16 23 F -0.12 -1.40 16.83 2.25 0.04 -1.37 16 24 C -0.09 -1.00 9.57 -39.12 -0.37 -1.37 16 25 C 0.12 1.92 6.22 -3.60 -0.02 1.90 16 26 C -0.12 -2.01 3.97 -88.60 -0.35 -2.36 16 27 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 28 C 0.19 4.20 4.84 -2.71 -0.01 4.19 16 29 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.02 0.33 7.72 -51.93 -0.40 -0.07 16 32 H 0.07 0.57 6.38 -51.93 -0.33 0.23 16 33 H 0.08 0.82 6.96 -51.93 -0.36 0.46 16 34 H 0.16 1.08 4.41 -52.49 -0.23 0.85 16 35 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.16 1.82 7.85 -52.49 -0.41 1.40 16 37 H 0.08 1.57 7.31 -51.92 -0.38 1.19 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.05 1.31 6.76 -51.93 -0.35 0.96 16 40 H 0.05 1.27 7.41 -51.93 -0.38 0.88 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -31.46 341.85 -9.68 -41.13 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -4.51 Total: -2.17 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -3.35 Total: 2.26 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: -0.59 Total: -50.06 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.48 Total: -1.89 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.46 -9.68 -41.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049078817.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.959 kcal (2) G-P(sol) polarization free energy of solvation -31.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds