Wall clock time and date at job start Tue Mar 31 2020 20:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00653 * 2 1 4 4 H 1.48507 * 109.46987 * 240.00118 * 3 2 1 5 5 H 1.48501 * 109.46933 * 359.97438 * 3 2 1 6 6 H 1.48488 * 109.47350 * 119.99873 * 3 2 1 7 7 C 1.38815 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00277 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00252 * 0.02562 * 7 2 1 10 10 C 1.46769 * 125.34210 * 180.02562 * 9 7 2 11 11 C 1.53964 * 106.62684 * 161.50278 * 10 9 7 12 12 H 1.09000 * 113.01674 * 265.71552 * 11 10 9 13 13 C 1.54103 * 109.44525 * 138.17685 * 11 10 9 14 14 N 1.46745 * 106.63355 * 278.64095 * 13 11 10 15 15 C 1.34777 * 125.32759 * 161.58474 * 14 13 11 16 16 O 1.21561 * 119.99772 * 185.16204 * 15 14 13 17 17 C 1.47788 * 120.00042 * 5.16389 * 15 14 13 18 18 C 1.39623 * 120.11843 * 24.85820 * 17 15 14 19 19 C 1.37898 * 119.91412 * 180.02562 * 18 17 15 20 20 C 1.38485 * 120.16071 * 0.02562 * 19 18 17 21 21 Cl 1.73596 * 119.87759 * 179.97438 * 20 19 18 22 22 C 1.38693 * 120.24187 * 359.97438 * 20 19 18 23 23 F 1.35100 * 119.95962 * 179.71860 * 22 20 19 24 24 C 1.38132 * 120.08261 * 359.97438 * 22 20 19 25 25 C 1.46642 * 109.34040 * 341.31831 * 14 13 11 26 26 C 1.53693 * 108.00921 * 1.06575 * 25 14 13 27 27 H 1.08998 * 112.55539 * 254.08959 * 26 25 14 28 28 C 1.48239 * 125.13914 * 359.97307 * 9 7 2 29 29 H 0.97009 * 119.99392 * 0.02562 * 1 2 3 30 30 H 1.09005 * 110.02740 * 42.21404 * 10 9 7 31 31 H 1.09006 * 110.02670 * 280.79689 * 10 9 7 32 32 H 1.09002 * 110.14084 * 159.30223 * 13 11 10 33 33 H 1.08992 * 109.95620 * 37.88005 * 13 11 10 34 34 H 1.08001 * 120.04879 * 359.97438 * 18 17 15 35 35 H 1.08000 * 119.92186 * 180.02562 * 19 18 17 36 36 H 1.08001 * 120.08223 * 179.97438 * 24 22 20 37 37 H 1.09009 * 109.75599 * 120.70798 * 25 14 13 38 38 H 1.09000 * 109.75941 * 241.41913 * 25 14 13 39 39 H 1.09001 * 110.29924 * 61.06232 * 28 9 7 40 40 H 1.09002 * 110.03943 * 299.79302 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2126 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 1.9377 -3.7220 0.0016 11 6 0.8497 -4.7058 0.4692 12 1 0.8847 -4.9021 1.5409 13 6 0.9085 -5.9828 -0.3914 14 7 0.1885 -5.6847 -1.6349 15 6 0.2963 -6.3809 -2.7839 16 8 -0.2741 -5.9936 -3.7850 17 6 1.1079 -7.6153 -2.8266 18 6 1.3302 -8.3483 -1.6593 19 6 2.0886 -9.4992 -1.7039 20 6 2.6306 -9.9292 -2.9036 21 17 3.5847 -11.3787 -2.9512 22 6 2.4139 -9.2061 -4.0671 23 9 2.9501 -9.6278 -5.2332 24 6 1.6549 -8.0525 -4.0341 25 6 -0.6713 -4.5147 -1.4298 26 6 -0.4705 -4.0246 0.0130 27 1 -1.3148 -4.2672 0.6583 28 6 -0.1510 -2.5209 0.0006 29 1 -0.4850 0.8402 -0.0004 30 1 2.7823 -3.7445 0.6904 31 1 2.2686 -3.9817 -1.0040 32 1 0.4259 -6.8094 0.1300 33 1 1.9455 -6.2352 -0.6122 34 1 0.9096 -8.0141 -0.7224 35 1 2.2604 -10.0665 -0.8012 36 1 1.4865 -7.4892 -4.9400 37 1 -0.3933 -3.7260 -2.1291 38 1 -1.7142 -4.7923 -1.5830 39 1 -0.5720 -2.0621 -0.8941 40 1 -0.5686 -2.0476 0.8893 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049078817.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:56 Heat of formation + Delta-G solvation = -32.041308 kcal Electronic energy + Delta-G solvation = -26708.461506 eV Core-core repulsion = 22657.003981 eV Total energy + Delta-G solvation = -4051.457525 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.13766 -41.91728 -40.26076 -39.15208 -37.62001 -36.67014 -34.17028 -32.60209 -32.16949 -31.26970 -31.14402 -27.56085 -27.12170 -25.57445 -24.11704 -23.71848 -21.92995 -21.15405 -20.83141 -19.25293 -18.62182 -18.18408 -17.81962 -17.30953 -17.03299 -16.88498 -16.71769 -16.49404 -15.77416 -15.50274 -15.12247 -14.75343 -14.64494 -14.55228 -14.24646 -14.06722 -13.89795 -13.49129 -13.41647 -13.23534 -13.02677 -12.95044 -12.72356 -12.65980 -12.57083 -12.06381 -12.04407 -11.85082 -11.64210 -11.56309 -11.37370 -11.20756 -10.70434 -10.23798 -9.93271 -9.69006 -8.87615 -7.85425 -5.19515 -0.62527 -0.09922 0.82145 1.45022 1.46348 1.47770 1.53847 1.77216 2.39795 2.49375 2.87345 3.21853 3.32478 3.41785 3.49867 3.58608 3.78867 3.86858 3.90546 3.96297 4.20033 4.25952 4.37681 4.52080 4.56329 4.58124 4.74980 4.78908 4.81909 4.83533 4.91923 5.00461 5.04741 5.14141 5.22221 5.39815 5.42886 5.48189 5.62722 5.80086 6.20568 6.37933 6.91832 7.10509 7.79385 8.41599 9.24609 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.020062 B = 0.002578 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.364054 B =10856.475163 C =10988.737803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.974 3.026 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.243 4.243 8 H 0.079 0.921 9 N -0.628 5.628 10 C 0.137 3.863 11 C -0.093 4.093 12 H 0.137 0.863 13 C 0.102 3.898 14 N -0.599 5.599 15 C 0.565 3.435 16 O -0.582 6.582 17 C -0.102 4.102 18 C -0.079 4.079 19 C -0.071 4.071 20 C -0.056 4.056 21 Cl -0.040 7.040 22 C 0.091 3.909 23 F -0.132 7.132 24 C -0.099 4.099 25 C 0.125 3.875 26 C -0.109 4.109 27 H 0.125 0.875 28 C 0.195 3.805 29 H 0.246 0.754 30 H 0.046 0.954 31 H 0.004 0.996 32 H 0.126 0.874 33 H 0.097 0.903 34 H 0.187 0.813 35 H 0.190 0.810 36 H 0.140 0.860 37 H 0.030 0.970 38 H 0.076 0.924 39 H 0.006 0.994 40 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.254 -25.041 1.907 25.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.258 4.258 3 Si 0.803 3.197 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.199 1.199 7 C -0.372 4.372 8 H 0.097 0.903 9 N -0.354 5.354 10 C 0.012 3.988 11 C -0.112 4.112 12 H 0.155 0.845 13 C -0.019 4.019 14 N -0.330 5.330 15 C 0.356 3.644 16 O -0.463 6.463 17 C -0.105 4.105 18 C -0.097 4.097 19 C -0.089 4.089 20 C -0.084 4.084 21 Cl -0.010 7.010 22 C 0.071 3.929 23 F -0.111 7.111 24 C -0.119 4.119 25 C 0.002 3.998 26 C -0.128 4.128 27 H 0.143 0.857 28 C 0.070 3.930 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.022 0.978 32 H 0.144 0.856 33 H 0.115 0.885 34 H 0.204 0.796 35 H 0.208 0.792 36 H 0.158 0.842 37 H 0.048 0.952 38 H 0.094 0.906 39 H 0.024 0.976 40 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 3.042 -24.802 1.270 25.020 hybrid contribution 0.429 1.619 -1.076 1.991 sum 3.472 -23.183 0.195 23.442 Atomic orbital electron populations 1.70149 1.06128 1.25256 1.58320 1.25588 0.96606 1.00868 1.02752 0.85212 0.77203 0.79150 0.78140 1.20953 1.22118 1.19902 1.19392 0.90923 0.83992 1.42887 0.90269 1.44921 1.02342 1.01154 1.87005 1.21463 0.95705 0.84716 0.96932 1.23042 0.93254 0.93319 1.01619 0.84474 1.22702 0.98320 0.97744 0.83160 1.48170 1.43564 1.29368 1.11895 1.18195 0.81031 0.83668 0.81548 1.90788 1.49859 1.70849 1.34839 1.19623 1.00278 0.95740 0.94878 1.22251 0.95699 0.93145 0.98604 1.21373 0.94785 0.95932 0.96806 1.21458 1.00350 0.91893 0.94692 1.98412 1.69759 1.34107 1.98762 1.17256 0.99003 0.95145 0.81512 1.91539 1.84088 1.89490 1.45971 1.21104 0.96420 0.94935 0.99454 1.21780 0.94419 0.86740 0.96874 1.22998 0.99651 0.95765 0.94429 0.85747 1.21045 0.83507 0.90480 0.97995 0.94438 0.93608 0.97834 0.85644 0.88499 0.79614 0.79247 0.84190 0.95164 0.90611 0.97596 0.96208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.62 10.25 21.65 0.22 -56.40 16 2 C -0.07 -3.69 5.48 84.86 0.47 -3.22 16 3 Si 0.97 45.81 29.55 68.60 2.03 47.84 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 7 C -0.24 -13.45 10.25 84.03 0.86 -12.59 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.63 -30.95 3.42 -693.53 -2.37 -33.32 16 10 C 0.14 5.01 6.49 86.65 0.56 5.57 16 11 C -0.09 -2.31 4.17 -9.27 -0.04 -2.35 16 12 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 13 C 0.10 1.79 4.23 86.71 0.37 2.16 16 14 N -0.60 -16.02 3.30 -820.79 -2.71 -18.73 16 15 C 0.57 16.65 7.63 86.77 0.66 17.31 16 16 O -0.58 -22.64 16.92 -3.91 -0.07 -22.71 16 17 C -0.10 -2.19 5.67 -20.09 -0.11 -2.30 16 18 C -0.08 -0.98 8.17 22.52 0.18 -0.79 16 19 C -0.07 -0.72 9.81 22.25 0.22 -0.50 16 20 C -0.06 -0.87 6.33 22.44 0.14 -0.73 16 21 Cl -0.04 -0.58 28.60 -2.72 -0.08 -0.66 16 22 C 0.09 1.85 7.26 22.35 0.16 2.01 16 23 F -0.13 -2.99 16.83 44.97 0.76 -2.23 16 24 C -0.10 -2.26 9.57 22.57 0.22 -2.04 16 25 C 0.12 4.05 6.22 86.59 0.54 4.59 16 26 C -0.11 -3.38 3.97 -9.49 -0.04 -3.41 16 27 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 28 C 0.19 9.04 4.84 86.29 0.42 9.46 16 29 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 30 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.00 0.15 7.72 -2.38 -0.02 0.13 16 32 H 0.13 0.99 6.38 -2.39 -0.02 0.98 16 33 H 0.10 1.47 6.96 -2.39 -0.02 1.45 16 34 H 0.19 1.19 4.41 -2.91 -0.01 1.17 16 35 H 0.19 0.52 8.06 -2.91 -0.02 0.50 16 36 H 0.14 3.53 7.85 -2.91 -0.02 3.51 16 37 H 0.03 1.27 7.31 -2.38 -0.02 1.26 16 38 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.01 0.32 6.76 -2.39 -0.02 0.30 16 40 H 0.02 1.02 7.41 -2.39 -0.02 1.01 16 Total: -1.00 -76.11 341.85 3.48 -72.64 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: 1.09 Total: 0.41 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 4.61 Total: 13.16 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -4.86 Total: -108.45 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.07 Total: -22.71 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.76 Total: -2.23 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.08 Total: -0.66 kcal Total: -76.11 3.48 -72.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049078817.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.595 kcal (2) G-P(sol) polarization free energy of solvation -76.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds