Wall clock time and date at job start Tue Mar 31 2020 20:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99725 * 2 1 4 4 H 1.48501 * 109.46972 * 270.00142 * 3 2 1 5 5 H 1.48502 * 109.47393 * 29.99628 * 3 2 1 6 6 H 1.48503 * 109.47323 * 149.99965 * 3 2 1 7 7 C 1.38812 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99608 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00148 * 0.02562 * 7 2 1 10 10 C 1.46653 * 125.33601 * 180.02562 * 9 7 2 11 11 C 1.53673 * 107.97567 * 179.30958 * 10 9 7 12 12 H 1.08997 * 112.77628 * 220.11224 * 11 10 9 13 13 C 1.53985 * 109.29875 * 93.05988 * 11 10 9 14 14 N 1.46760 * 106.67729 * 221.16728 * 13 11 10 15 15 C 1.34770 * 125.33496 * 198.41750 * 14 13 11 16 16 O 1.21564 * 120.00176 * 174.79806 * 15 14 13 17 17 C 1.47768 * 120.00201 * 354.78831 * 15 14 13 18 18 C 1.39618 * 120.14416 * 320.55466 * 17 15 14 19 19 C 1.38118 * 119.83903 * 179.97438 * 18 17 15 20 20 F 1.35107 * 119.93567 * 180.02562 * 19 18 17 21 21 C 1.38624 * 120.13347 * 359.97438 * 19 18 17 22 22 C 1.38244 * 120.28877 * 359.97438 * 21 19 18 23 23 C 1.38155 * 120.16030 * 359.76790 * 22 21 19 24 24 Cl 1.73603 * 120.06869 * 180.25483 * 23 22 21 25 25 C 1.46660 * 109.32965 * 18.45255 * 14 13 11 26 26 C 1.53672 * 107.97380 * 359.29076 * 25 14 13 27 27 H 1.09000 * 113.31933 * 219.80004 * 26 25 14 28 28 C 1.46762 * 125.33360 * 0.02562 * 9 7 2 29 29 H 0.96997 * 120.00509 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.77363 * 59.67269 * 10 9 7 31 31 H 1.09007 * 109.76235 * 298.93422 * 10 9 7 32 32 H 1.08999 * 110.01647 * 340.47101 * 13 11 10 33 33 H 1.08997 * 110.01421 * 101.86849 * 13 11 10 34 34 H 1.08001 * 120.07615 * 359.97438 * 18 17 15 35 35 H 1.07997 * 119.86116 * 180.02562 * 21 19 18 36 36 H 1.07995 * 119.92087 * 179.97438 * 22 21 19 37 37 H 1.09009 * 109.76845 * 239.66070 * 25 14 13 38 38 H 1.09003 * 109.76875 * 118.92386 * 25 14 13 39 39 H 1.09001 * 110.02094 * 317.73569 * 28 9 7 40 40 H 1.09003 * 110.01425 * 79.13132 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 1.9377 -3.7208 0.0016 11 6 0.8074 -4.7617 0.0188 12 1 1.0242 -5.6094 0.6688 13 6 0.4708 -5.1715 -1.4269 14 7 -0.9915 -5.2650 -1.5085 15 6 -1.6784 -5.9193 -2.4658 16 8 -2.8878 -6.0149 -2.3883 17 6 -0.9616 -6.5203 -3.6097 18 6 0.1114 -5.8471 -4.1967 19 6 0.7773 -6.4149 -5.2653 20 9 1.8163 -5.7653 -5.8345 21 6 0.3824 -7.6505 -5.7542 22 6 -0.6786 -8.3223 -5.1764 23 6 -1.3498 -7.7679 -4.1036 24 17 -2.6777 -8.6167 -3.3756 25 6 -1.5882 -4.5341 -0.3857 26 6 -0.4459 -3.9587 0.4661 27 1 -0.6325 -4.0228 1.5381 28 6 -0.1356 -2.5245 -0.0005 29 1 -0.4851 0.8400 0.0004 30 1 2.5616 -3.8393 0.8875 31 1 2.5433 -3.8490 -0.8957 32 1 0.8359 -4.4165 -2.1232 33 1 0.9198 -6.1382 -1.6547 34 1 0.4200 -4.8846 -3.8161 35 1 0.9065 -8.0906 -6.5897 36 1 -0.9815 -9.2844 -5.5624 37 1 -2.1916 -5.2129 0.2170 38 1 -2.2112 -3.7232 -0.7631 39 1 -0.5782 -1.8043 0.6876 40 1 -0.5242 -2.3674 -1.0067 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049078955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:12 Heat of formation + Delta-G solvation = -17.164497 kcal Electronic energy + Delta-G solvation = -27171.017710 eV Core-core repulsion = 23120.205292 eV Total energy + Delta-G solvation = -4050.812418 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.19609 -40.66008 -39.20189 -37.87724 -36.60562 -35.07188 -32.58741 -31.87915 -30.57633 -30.11152 -29.54103 -25.92392 -25.60806 -24.44211 -23.12150 -22.52538 -20.25272 -20.03773 -19.35286 -17.87817 -17.17267 -16.95792 -16.88375 -16.50404 -15.89026 -15.82626 -15.08558 -14.87136 -14.39619 -14.27987 -13.94437 -13.65349 -13.52253 -13.34172 -13.06703 -12.81118 -12.65718 -12.15754 -12.04733 -11.82550 -11.64888 -11.45937 -11.43252 -11.16621 -10.96897 -10.84979 -10.53395 -10.15646 -10.12228 -9.89552 -9.85536 -9.62344 -9.53158 -8.91649 -8.68030 -8.45735 -6.90267 -5.73397 -3.13059 0.34861 0.62802 1.84360 2.54518 2.94994 3.20935 3.36948 3.42234 3.44155 3.82151 4.16147 4.32824 4.44151 4.53990 4.72118 4.77211 4.89626 5.12972 5.16468 5.32420 5.45084 5.48773 5.50772 5.56565 5.57206 5.60423 5.69948 5.78663 5.92245 6.12857 6.19158 6.26075 6.26483 6.45010 6.47939 6.58916 6.77681 7.42909 7.56630 7.57897 7.77603 8.12775 8.26844 9.16599 9.77210 10.39640 11.32747 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015356 B = 0.003417 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.929523 B = 8193.151431 C = 9248.486779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.109 4.109 12 H 0.091 0.909 13 C 0.107 3.893 14 N -0.600 5.600 15 C 0.568 3.432 16 O -0.517 6.517 17 C -0.085 4.085 18 C -0.112 4.112 19 C 0.102 3.898 20 F -0.129 7.129 21 C -0.124 4.124 22 C -0.090 4.090 23 C -0.006 4.006 24 Cl -0.036 7.036 25 C 0.122 3.878 26 C -0.122 4.122 27 H 0.095 0.905 28 C 0.169 3.831 29 H 0.253 0.747 30 H 0.027 0.973 31 H 0.025 0.975 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.227 -18.229 -8.232 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.019 3.981 11 C -0.128 4.128 12 H 0.109 0.891 13 C -0.016 4.016 14 N -0.332 5.332 15 C 0.355 3.645 16 O -0.394 6.394 17 C -0.089 4.089 18 C -0.132 4.132 19 C 0.083 3.917 20 F -0.107 7.107 21 C -0.143 4.143 22 C -0.108 4.108 23 C -0.034 4.034 24 Cl -0.007 7.007 25 C 0.000 4.000 26 C -0.142 4.142 27 H 0.113 0.887 28 C 0.044 3.956 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.174 0.826 35 H 0.167 0.833 36 H 0.167 0.833 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -1.051 -18.118 -8.184 19.908 hybrid contribution 0.675 0.960 -0.190 1.189 sum -0.376 -17.158 -8.374 19.096 Atomic orbital electron populations 1.69860 1.04888 1.25017 1.57116 1.24792 0.95717 0.97754 1.02065 0.86092 0.78569 0.83338 0.77595 1.21601 1.21625 1.20651 1.19050 0.90525 0.82306 1.43777 0.90370 1.44246 1.01634 0.99841 1.87088 1.21075 0.93179 0.85524 0.98339 1.22812 0.97290 0.98359 0.94368 0.89116 1.22333 0.79808 1.00959 0.98503 1.48149 1.07820 1.51175 1.26086 1.17527 0.86643 0.78860 0.81437 1.90834 1.12919 1.58874 1.76729 1.19636 0.96689 0.94322 0.98266 1.21557 0.94299 1.01786 0.95518 1.17555 0.87677 0.92138 0.94378 1.91568 1.54942 1.80731 1.83494 1.21266 0.97906 0.93784 1.01372 1.20871 0.94838 1.00849 0.94271 1.20971 0.92937 0.93139 0.96338 1.98418 1.44476 1.75837 1.81940 1.21797 0.96153 0.95271 0.86795 1.23246 0.92362 0.99314 0.99268 0.88684 1.21554 0.84744 0.89708 0.99604 0.93640 0.95559 0.95709 0.90553 0.91330 0.82609 0.83330 0.83284 0.91818 0.90611 0.88776 0.96276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.12 10.16 55.49 0.56 -25.56 16 2 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 21.57 29.55 -169.99 -5.02 16.54 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.23 -6.11 10.25 -15.06 -0.15 -6.26 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -14.46 3.38 -171.89 -0.58 -15.04 16 10 C 0.15 2.75 6.58 -3.61 -0.02 2.72 16 11 C -0.11 -1.69 4.10 -88.47 -0.36 -2.05 16 12 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 13 C 0.11 1.54 4.54 -3.39 -0.02 1.53 16 14 N -0.60 -9.45 3.31 -173.47 -0.57 -10.02 16 15 C 0.57 9.14 7.13 -12.37 -0.09 9.05 16 16 O -0.52 -9.63 15.61 5.31 0.08 -9.54 16 17 C -0.09 -1.13 5.36 -104.95 -0.56 -1.70 16 18 C -0.11 -1.37 8.32 -39.11 -0.33 -1.69 16 19 C 0.10 1.09 7.29 -39.48 -0.29 0.80 16 20 F -0.13 -1.48 17.26 2.25 0.04 -1.45 16 21 C -0.12 -1.02 10.02 -39.44 -0.40 -1.42 16 22 C -0.09 -0.77 9.82 -39.61 -0.39 -1.15 16 23 C -0.01 -0.07 6.33 -39.07 -0.25 -0.32 16 24 Cl -0.04 -0.45 26.82 -51.86 -1.39 -1.84 16 25 C 0.12 2.00 6.19 -3.61 -0.02 1.98 16 26 C -0.12 -2.11 4.10 -88.48 -0.36 -2.47 16 27 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 28 C 0.17 3.83 4.87 -3.39 -0.02 3.82 16 29 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.03 0.46 7.63 -51.93 -0.40 0.06 16 32 H 0.08 1.20 5.99 -51.93 -0.31 0.89 16 33 H 0.07 0.84 7.65 -51.93 -0.40 0.44 16 34 H 0.16 1.99 5.86 -52.49 -0.31 1.68 16 35 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 38 H 0.08 1.35 7.63 -51.93 -0.40 0.96 16 39 H 0.09 2.45 6.19 -51.93 -0.32 2.13 16 40 H 0.02 0.48 7.56 -51.93 -0.39 0.09 16 LS Contribution 341.12 15.07 5.14 5.14 Total: -1.00 -30.66 341.12 -9.70 -40.36 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -4.60 Total: -1.13 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -3.35 Total: 2.54 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.59 Total: -50.62 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.08 Total: -9.54 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.39 Total: -1.84 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.66 -9.70 -40.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049078955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.192 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds