Wall clock time and date at job start Tue Mar 31 2020 20:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99725 * 2 1 4 4 H 1.48501 * 109.46972 * 270.00142 * 3 2 1 5 5 H 1.48502 * 109.47393 * 29.99628 * 3 2 1 6 6 H 1.48503 * 109.47323 * 149.99965 * 3 2 1 7 7 C 1.38812 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99608 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00148 * 0.02562 * 7 2 1 10 10 C 1.46653 * 125.33601 * 180.02562 * 9 7 2 11 11 C 1.53673 * 107.97567 * 179.30958 * 10 9 7 12 12 H 1.08997 * 112.77628 * 220.11224 * 11 10 9 13 13 C 1.53985 * 109.29875 * 93.05988 * 11 10 9 14 14 N 1.46760 * 106.67729 * 221.16728 * 13 11 10 15 15 C 1.34770 * 125.33496 * 198.41750 * 14 13 11 16 16 O 1.21564 * 120.00176 * 174.79806 * 15 14 13 17 17 C 1.47768 * 120.00201 * 354.78831 * 15 14 13 18 18 C 1.39618 * 120.14416 * 320.55466 * 17 15 14 19 19 C 1.38118 * 119.83903 * 179.97438 * 18 17 15 20 20 F 1.35107 * 119.93567 * 180.02562 * 19 18 17 21 21 C 1.38624 * 120.13347 * 359.97438 * 19 18 17 22 22 C 1.38244 * 120.28877 * 359.97438 * 21 19 18 23 23 C 1.38155 * 120.16030 * 359.76790 * 22 21 19 24 24 Cl 1.73603 * 120.06869 * 180.25483 * 23 22 21 25 25 C 1.46660 * 109.32965 * 18.45255 * 14 13 11 26 26 C 1.53672 * 107.97380 * 359.29076 * 25 14 13 27 27 H 1.09000 * 113.31933 * 219.80004 * 26 25 14 28 28 C 1.46762 * 125.33360 * 0.02562 * 9 7 2 29 29 H 0.96997 * 120.00509 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.77363 * 59.67269 * 10 9 7 31 31 H 1.09007 * 109.76235 * 298.93422 * 10 9 7 32 32 H 1.08999 * 110.01647 * 340.47101 * 13 11 10 33 33 H 1.08997 * 110.01421 * 101.86849 * 13 11 10 34 34 H 1.08001 * 120.07615 * 359.97438 * 18 17 15 35 35 H 1.07997 * 119.86116 * 180.02562 * 21 19 18 36 36 H 1.07995 * 119.92087 * 179.97438 * 22 21 19 37 37 H 1.09009 * 109.76845 * 239.66070 * 25 14 13 38 38 H 1.09003 * 109.76875 * 118.92386 * 25 14 13 39 39 H 1.09001 * 110.02094 * 317.73569 * 28 9 7 40 40 H 1.09003 * 110.01425 * 79.13132 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 1.9377 -3.7208 0.0016 11 6 0.8074 -4.7617 0.0188 12 1 1.0242 -5.6094 0.6688 13 6 0.4708 -5.1715 -1.4269 14 7 -0.9915 -5.2650 -1.5085 15 6 -1.6784 -5.9193 -2.4658 16 8 -2.8878 -6.0149 -2.3883 17 6 -0.9616 -6.5203 -3.6097 18 6 0.1114 -5.8471 -4.1967 19 6 0.7773 -6.4149 -5.2653 20 9 1.8163 -5.7653 -5.8345 21 6 0.3824 -7.6505 -5.7542 22 6 -0.6786 -8.3223 -5.1764 23 6 -1.3498 -7.7679 -4.1036 24 17 -2.6777 -8.6167 -3.3756 25 6 -1.5882 -4.5341 -0.3857 26 6 -0.4459 -3.9587 0.4661 27 1 -0.6325 -4.0228 1.5381 28 6 -0.1356 -2.5245 -0.0005 29 1 -0.4851 0.8400 0.0004 30 1 2.5616 -3.8393 0.8875 31 1 2.5433 -3.8490 -0.8957 32 1 0.8359 -4.4165 -2.1232 33 1 0.9198 -6.1382 -1.6547 34 1 0.4200 -4.8846 -3.8161 35 1 0.9065 -8.0906 -6.5897 36 1 -0.9815 -9.2844 -5.5624 37 1 -2.1916 -5.2129 0.2170 38 1 -2.2112 -3.7232 -0.7631 39 1 -0.5782 -1.8043 0.6876 40 1 -0.5242 -2.3674 -1.0067 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049078955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:11 Heat of formation + Delta-G solvation = -34.505522 kcal Electronic energy + Delta-G solvation = -27171.769674 eV Core-core repulsion = 23120.205292 eV Total energy + Delta-G solvation = -4051.564381 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.05068 -41.87135 -40.34807 -39.09449 -37.50174 -36.66528 -34.22268 -33.06307 -31.50892 -31.38888 -31.17966 -27.56088 -27.10135 -25.72888 -24.12066 -23.67971 -21.95217 -21.17328 -20.76014 -19.10977 -18.62934 -18.12208 -17.77823 -17.74054 -17.00991 -16.75893 -16.53508 -16.29488 -15.91528 -15.50048 -15.16977 -14.91833 -14.79808 -14.45552 -14.22544 -14.10130 -13.71197 -13.56601 -13.44258 -13.36618 -13.15642 -12.77608 -12.70451 -12.60463 -12.35474 -12.13265 -11.98706 -11.92538 -11.84425 -11.56642 -11.31808 -11.06131 -10.71056 -10.39748 -9.81442 -9.70461 -8.87514 -7.79781 -5.20870 -0.52230 -0.18470 0.97174 1.47037 1.47404 1.48069 1.56965 1.78790 2.27650 2.49902 2.93873 3.19250 3.32409 3.41030 3.45472 3.60276 3.80673 3.85795 3.92497 3.95477 4.18392 4.23435 4.28921 4.48836 4.50004 4.55155 4.66874 4.75139 4.81085 4.83240 4.86809 4.91809 4.98408 5.07913 5.17455 5.37386 5.48642 5.48805 5.62551 5.81123 6.27931 6.32707 6.89033 7.12002 7.80949 8.41531 9.24397 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.015356 B = 0.003417 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.929523 B = 8193.151431 C = 9248.486779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.065 4.065 3 Si 0.976 3.024 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.238 4.238 8 H 0.085 0.915 9 N -0.623 5.623 10 C 0.139 3.861 11 C -0.093 4.093 12 H 0.131 0.869 13 C 0.112 3.888 14 N -0.602 5.602 15 C 0.566 3.434 16 O -0.551 6.551 17 C -0.105 4.105 18 C -0.119 4.119 19 C 0.095 3.905 20 F -0.135 7.135 21 C -0.099 4.099 22 C -0.074 4.074 23 C -0.013 4.013 24 Cl -0.047 7.047 25 C 0.127 3.873 26 C -0.110 4.110 27 H 0.112 0.888 28 C 0.181 3.819 29 H 0.245 0.755 30 H 0.036 0.964 31 H 0.033 0.967 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.141 0.859 35 H 0.188 0.812 36 H 0.185 0.815 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.055 0.945 40 H -0.018 1.018 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.485 -21.093 -9.248 23.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.258 4.258 3 Si 0.805 3.195 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.367 4.367 8 H 0.102 0.898 9 N -0.350 5.350 10 C 0.014 3.986 11 C -0.113 4.113 12 H 0.149 0.851 13 C -0.010 4.010 14 N -0.334 5.334 15 C 0.354 3.646 16 O -0.429 6.429 17 C -0.109 4.109 18 C -0.139 4.139 19 C 0.076 3.924 20 F -0.114 7.114 21 C -0.118 4.118 22 C -0.092 4.092 23 C -0.041 4.041 24 Cl -0.018 7.018 25 C 0.005 3.995 26 C -0.130 4.130 27 H 0.130 0.870 28 C 0.055 3.945 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.158 0.842 35 H 0.205 0.795 36 H 0.203 0.797 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.000 1.000 Dipole moment (debyes) X Y Z Total from point charges 0.706 -21.012 -9.198 22.948 hybrid contribution 0.184 1.824 0.050 1.834 sum 0.890 -19.188 -9.149 21.276 Atomic orbital electron populations 1.70125 1.06251 1.24967 1.58599 1.25596 0.96510 1.00935 1.02739 0.85112 0.77795 0.79344 0.77293 1.21685 1.22276 1.19113 1.19451 0.91118 0.83633 1.42460 0.89763 1.44544 1.02325 1.01198 1.86886 1.21285 0.94386 0.83989 0.98905 1.22854 0.94586 0.98261 0.95550 0.85145 1.22323 0.79135 1.02063 0.97475 1.48205 1.08340 1.50909 1.25972 1.18007 0.86448 0.78286 0.81814 1.90803 1.14346 1.60226 1.77574 1.19398 0.97723 0.95543 0.98227 1.21391 0.94597 1.01382 0.96515 1.17691 0.87541 0.93029 0.94157 1.91557 1.55226 1.81097 1.83493 1.21668 0.96877 0.92076 1.01182 1.21267 0.93718 1.01781 0.92468 1.21188 0.92997 0.92710 0.97220 1.98416 1.45176 1.75818 1.82341 1.21638 0.95723 0.94991 0.87181 1.23051 0.93865 0.95938 1.00152 0.87036 1.21195 0.84219 0.92406 0.96639 0.94548 0.94561 0.94907 0.92333 0.88210 0.84157 0.79486 0.79739 0.90097 0.93198 0.92679 0.99978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.47 10.16 21.65 0.22 -56.25 16 2 C -0.07 -3.64 5.48 84.86 0.47 -3.18 16 3 Si 0.98 45.23 29.55 68.60 2.03 47.26 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.24 -12.90 10.25 84.03 0.86 -12.04 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.62 -30.48 3.38 -697.74 -2.36 -32.84 16 10 C 0.14 5.11 6.58 86.58 0.57 5.68 16 11 C -0.09 -2.71 4.10 -9.40 -0.04 -2.75 16 12 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 13 C 0.11 3.12 4.54 86.66 0.39 3.51 16 14 N -0.60 -18.92 3.31 -821.01 -2.72 -21.64 16 15 C 0.57 18.24 7.13 86.76 0.62 18.86 16 16 O -0.55 -20.86 15.61 -3.92 -0.06 -20.92 16 17 C -0.10 -2.70 5.36 -20.07 -0.11 -2.81 16 18 C -0.12 -2.80 8.32 22.57 0.19 -2.62 16 19 C 0.10 1.80 7.29 22.33 0.16 1.97 16 20 F -0.14 -2.85 17.26 44.97 0.78 -2.08 16 21 C -0.10 -1.21 10.02 22.36 0.22 -0.99 16 22 C -0.07 -0.97 9.82 22.25 0.22 -0.75 16 23 C -0.01 -0.28 6.33 22.60 0.14 -0.14 16 24 Cl -0.05 -1.09 26.82 -2.72 -0.07 -1.16 16 25 C 0.13 4.24 6.19 86.57 0.54 4.77 16 26 C -0.11 -3.80 4.10 -9.41 -0.04 -3.83 16 27 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 28 C 0.18 8.59 4.87 86.66 0.42 9.01 16 29 H 0.24 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.03 1.17 7.63 -2.38 -0.02 1.15 16 32 H 0.06 1.86 5.99 -2.39 -0.01 1.84 16 33 H 0.10 2.18 7.65 -2.39 -0.02 2.16 16 34 H 0.14 3.68 5.86 -2.91 -0.02 3.66 16 35 H 0.19 0.91 8.06 -2.91 -0.02 0.89 16 36 H 0.19 1.14 8.06 -2.91 -0.02 1.12 16 37 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 38 H 0.05 1.91 7.63 -2.39 -0.02 1.89 16 39 H 0.06 3.05 6.19 -2.39 -0.01 3.03 16 40 H -0.02 -0.95 7.56 -2.39 -0.02 -0.97 16 Total: -1.00 -70.51 341.12 3.51 -66.99 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 1.08 Total: 5.93 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 4.62 Total: 14.70 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -4.86 Total: -110.72 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.06 Total: -20.92 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.78 Total: -2.08 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.07 Total: -1.16 kcal Total: -70.51 3.51 -66.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049078955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.489 kcal (2) G-P(sol) polarization free energy of solvation -70.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds