Wall clock time and date at job start Tue Mar 31 2020 20:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00427 * 2 1 4 4 H 1.48504 * 109.46695 * 269.99944 * 3 2 1 5 5 H 1.48491 * 109.47054 * 29.99702 * 3 2 1 6 6 H 1.48492 * 109.47268 * 150.00204 * 3 2 1 7 7 C 1.38816 * 119.99553 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99920 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00207 * 359.97438 * 7 2 1 10 10 C 1.46642 * 125.33009 * 0.02787 * 9 7 2 11 11 C 1.53688 * 108.01055 * 180.81083 * 10 9 7 12 12 H 1.08999 * 113.05912 * 253.80621 * 11 10 9 13 13 C 1.53721 * 109.34073 * 127.55374 * 11 10 9 14 14 N 1.46667 * 107.94599 * 266.25517 * 13 11 10 15 15 C 1.34779 * 125.33859 * 180.54750 * 14 13 11 16 16 O 1.21558 * 119.99888 * 5.24473 * 15 14 13 17 17 C 1.47773 * 119.99867 * 185.24711 * 15 14 13 18 18 C 1.39634 * 120.14294 * 39.49133 * 17 15 14 19 19 C 1.37901 * 119.91475 * 180.02562 * 18 17 15 20 20 C 1.38394 * 120.20870 * 359.97438 * 19 18 17 21 21 C 1.38471 * 120.29090 * 359.97438 * 20 19 18 22 22 F 1.35093 * 119.95925 * 179.73821 * 21 20 19 23 23 C 1.38384 * 120.07916 * 0.02562 * 21 20 19 24 24 Cl 1.73602 * 120.10167 * 179.97438 * 23 21 20 25 25 C 1.46777 * 109.32053 * 0.80779 * 14 13 11 26 26 C 1.54164 * 106.52733 * 341.09041 * 25 14 13 27 27 H 1.08998 * 113.83148 * 265.68181 * 26 25 14 28 28 C 1.46743 * 125.33119 * 179.97438 * 9 7 2 29 29 H 0.97000 * 119.99817 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.75936 * 61.17147 * 10 9 7 31 31 H 1.08996 * 109.76023 * 300.45561 * 10 9 7 32 32 H 1.09003 * 109.77473 * 146.62723 * 13 11 10 33 33 H 1.09005 * 109.77226 * 25.87387 * 13 11 10 34 34 H 1.07999 * 120.04830 * 0.04520 * 18 17 15 35 35 H 1.07995 * 119.89616 * 180.02562 * 19 18 17 36 36 H 1.07998 * 119.85972 * 179.97438 * 20 19 18 37 37 H 1.09001 * 110.02735 * 100.51601 * 25 14 13 38 38 H 1.08998 * 110.02211 * 221.92675 * 25 14 13 39 39 H 1.09004 * 110.00749 * 42.36856 * 28 9 7 40 40 H 1.08996 * 110.01472 * 281.00434 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0016 10 6 -0.1347 -2.5242 0.0017 11 6 -0.4721 -4.0235 0.0237 12 1 -0.8374 -4.3930 -0.9344 13 6 -1.4479 -4.3088 1.1767 14 7 -0.6599 -4.7105 2.3467 15 6 -1.1667 -5.0510 3.5483 16 8 -2.3700 -5.1323 3.6995 17 6 -0.2593 -5.3255 4.6819 18 6 0.8812 -4.5427 4.8726 19 6 1.7250 -4.8034 5.9317 20 6 1.4449 -5.8383 6.8068 21 6 0.3158 -6.6193 6.6263 22 9 0.0517 -7.6312 7.4815 23 6 -0.5392 -6.3683 5.5676 24 17 -1.9546 -7.3475 5.3404 25 6 0.7673 -4.6775 2.0056 26 6 0.8511 -4.7079 0.4665 27 1 0.9780 -5.7079 0.0520 28 6 1.9378 -3.7216 0.0017 29 1 -0.4850 0.8401 0.0004 30 1 -0.5475 -2.0668 -0.8975 31 1 -0.5499 -2.0400 0.8855 32 1 -2.1264 -5.1140 0.8949 33 1 -2.0187 -3.4093 1.4078 34 1 1.1020 -3.7340 4.1918 35 1 2.6067 -4.1975 6.0792 36 1 2.1098 -6.0378 7.6341 37 1 1.2217 -3.7640 2.3891 38 1 1.2710 -5.5493 2.4231 39 1 2.7817 -3.7444 0.6913 40 1 2.2704 -3.9795 -1.0037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049080610.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:34 Heat of formation + Delta-G solvation = -15.872147 kcal Electronic energy + Delta-G solvation = -27237.126943 eV Core-core repulsion = 23186.370566 eV Total energy + Delta-G solvation = -4050.756378 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.23281 -40.61793 -39.14245 -37.83787 -36.64747 -35.01608 -32.48190 -31.66590 -30.87457 -30.00291 -29.49323 -25.92464 -25.59704 -24.36809 -23.00944 -22.62150 -20.17595 -20.01420 -19.36972 -17.99441 -16.96350 -16.93797 -16.86575 -16.48013 -15.99931 -15.71501 -15.16775 -14.71044 -14.61596 -14.36358 -13.79817 -13.66302 -13.32823 -13.28087 -12.92178 -12.76143 -12.31732 -12.20208 -12.05709 -11.91696 -11.70717 -11.54050 -11.43312 -11.11384 -10.95444 -10.86511 -10.48316 -10.16630 -10.14768 -9.93298 -9.80444 -9.69260 -9.29664 -8.99483 -8.67206 -8.39986 -6.91302 -5.79323 -3.13604 0.41428 0.66830 1.83024 2.61887 2.96038 3.29937 3.34831 3.40001 3.42353 3.80256 4.22991 4.42913 4.49300 4.54788 4.73652 4.81532 4.92041 5.11216 5.19017 5.40938 5.43937 5.50277 5.54817 5.60268 5.62218 5.72344 5.80678 5.89716 5.91595 6.10562 6.21506 6.28843 6.30143 6.46861 6.50773 6.54911 6.73938 7.48506 7.50350 7.62602 7.74688 8.18102 8.19405 9.14600 9.75163 10.38398 11.31920 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.016650 B = 0.003374 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.260829 B = 8297.495894 C = 9048.148395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.184 3.816 11 C -0.123 4.123 12 H 0.092 0.908 13 C 0.122 3.878 14 N -0.598 5.598 15 C 0.568 3.432 16 O -0.519 6.519 17 C -0.087 4.087 18 C -0.085 4.085 19 C -0.090 4.090 20 C -0.124 4.124 21 C 0.099 3.901 22 F -0.126 7.126 23 C -0.034 4.034 24 Cl -0.025 7.025 25 C 0.108 3.892 26 C -0.111 4.111 27 H 0.091 0.909 28 C 0.145 3.855 29 H 0.253 0.747 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.038 0.962 40 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.098 -13.575 10.098 17.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.201 4.201 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.361 4.361 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.059 3.941 11 C -0.143 4.143 12 H 0.110 0.890 13 C 0.000 4.000 14 N -0.331 5.331 15 C 0.355 3.645 16 O -0.396 6.396 17 C -0.091 4.091 18 C -0.104 4.104 19 C -0.108 4.108 20 C -0.144 4.144 21 C 0.079 3.921 22 F -0.104 7.104 23 C -0.062 4.062 24 Cl 0.004 6.996 25 C -0.014 4.014 26 C -0.131 4.131 27 H 0.109 0.891 28 C 0.019 3.981 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.170 0.830 35 H 0.166 0.834 36 H 0.166 0.834 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 2.206 -13.526 10.258 17.118 hybrid contribution 0.325 0.673 0.110 0.755 sum 2.531 -12.853 10.367 16.706 Atomic orbital electron populations 1.69950 1.04879 1.25180 1.56656 1.24797 0.95687 0.97694 1.01959 0.86138 0.78568 0.83514 0.77626 1.21572 1.21681 1.20681 1.19019 0.90427 0.82259 1.44373 0.90360 1.44217 1.01464 0.99919 1.87315 1.21127 0.84570 0.86736 1.01637 1.23171 0.93774 1.00492 0.96825 0.88973 1.21874 0.93911 1.00011 0.84220 1.48111 1.08622 1.65682 1.10681 1.17525 0.87447 0.78135 0.81362 1.90829 1.14346 1.51626 1.82796 1.19708 0.96691 0.96196 0.96540 1.21718 0.91647 0.98868 0.98134 1.21126 0.99907 0.96488 0.93287 1.21317 0.95907 0.95738 1.01394 1.17241 0.95897 0.89367 0.89615 1.91547 1.93757 1.57039 1.68075 1.20982 0.92057 0.96601 0.96602 1.98421 1.36783 1.67998 1.96401 1.22315 0.81253 1.01713 0.96133 1.22957 0.97345 0.99300 0.93517 0.89089 1.21166 0.93642 0.85709 0.97616 0.93643 0.93686 0.93011 0.91975 0.90582 0.83003 0.83444 0.83414 0.89972 0.91518 0.94377 0.96156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.77 10.25 55.49 0.57 -25.20 16 2 C 0.00 -0.13 5.48 -17.43 -0.10 -0.22 16 3 Si 0.91 21.13 29.55 -169.99 -5.02 16.11 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.23 -6.03 10.25 -15.06 -0.15 -6.18 16 8 H 0.08 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.60 -13.96 3.37 -171.93 -0.58 -14.54 16 10 C 0.18 4.09 4.75 -3.61 -0.02 4.07 16 11 C -0.12 -2.07 4.02 -88.60 -0.36 -2.42 16 12 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 13 C 0.12 2.01 6.24 -3.58 -0.02 1.99 16 14 N -0.60 -9.54 3.31 -173.30 -0.57 -10.11 16 15 C 0.57 9.44 7.14 -12.36 -0.09 9.35 16 16 O -0.52 -10.06 15.59 5.31 0.08 -9.97 16 17 C -0.09 -1.21 5.36 -104.95 -0.56 -1.78 16 18 C -0.09 -0.97 8.33 -39.18 -0.33 -1.30 16 19 C -0.09 -0.78 10.03 -39.65 -0.40 -1.18 16 20 C -0.12 -1.09 10.02 -39.44 -0.40 -1.48 16 21 C 0.10 1.13 7.27 -39.44 -0.29 0.85 16 22 F -0.13 -1.47 16.83 2.25 0.04 -1.43 16 23 C -0.03 -0.45 6.34 -39.00 -0.25 -0.70 16 24 Cl -0.03 -0.37 26.47 -51.86 -1.37 -1.74 16 25 C 0.11 1.55 4.57 -3.28 -0.02 1.54 16 26 C -0.11 -1.67 4.19 -88.24 -0.37 -2.04 16 27 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 28 C 0.15 2.62 6.37 -3.42 -0.02 2.60 16 29 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.04 1.14 7.45 -51.93 -0.39 0.75 16 31 H 0.05 1.30 6.51 -51.93 -0.34 0.96 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.38 7.44 -51.93 -0.39 1.00 16 34 H 0.15 1.78 5.86 -52.49 -0.31 1.47 16 35 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.08 1.29 6.16 -51.93 -0.32 0.97 16 38 H 0.07 0.80 7.63 -51.93 -0.40 0.41 16 39 H 0.04 0.65 7.95 -51.93 -0.41 0.24 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 340.86 15.07 5.14 5.14 Total: -1.00 -30.59 340.86 -9.71 -40.30 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -4.63 Total: -1.64 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -3.36 Total: 3.09 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.58 Total: -49.85 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.37 Total: -1.74 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.59 -9.71 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049080610.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.426 kcal (2) G-P(sol) polarization free energy of solvation -30.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds