Wall clock time and date at job start Tue Mar 31 2020 20:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00427 * 2 1 4 4 H 1.48504 * 109.46695 * 269.99944 * 3 2 1 5 5 H 1.48491 * 109.47054 * 29.99702 * 3 2 1 6 6 H 1.48492 * 109.47268 * 150.00204 * 3 2 1 7 7 C 1.38816 * 119.99553 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99920 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00207 * 359.97438 * 7 2 1 10 10 C 1.46642 * 125.33009 * 0.02787 * 9 7 2 11 11 C 1.53688 * 108.01055 * 180.81083 * 10 9 7 12 12 H 1.08999 * 113.05912 * 253.80621 * 11 10 9 13 13 C 1.53721 * 109.34073 * 127.55374 * 11 10 9 14 14 N 1.46667 * 107.94599 * 266.25517 * 13 11 10 15 15 C 1.34779 * 125.33859 * 180.54750 * 14 13 11 16 16 O 1.21558 * 119.99888 * 5.24473 * 15 14 13 17 17 C 1.47773 * 119.99867 * 185.24711 * 15 14 13 18 18 C 1.39634 * 120.14294 * 39.49133 * 17 15 14 19 19 C 1.37901 * 119.91475 * 180.02562 * 18 17 15 20 20 C 1.38394 * 120.20870 * 359.97438 * 19 18 17 21 21 C 1.38471 * 120.29090 * 359.97438 * 20 19 18 22 22 F 1.35093 * 119.95925 * 179.73821 * 21 20 19 23 23 C 1.38384 * 120.07916 * 0.02562 * 21 20 19 24 24 Cl 1.73602 * 120.10167 * 179.97438 * 23 21 20 25 25 C 1.46777 * 109.32053 * 0.80779 * 14 13 11 26 26 C 1.54164 * 106.52733 * 341.09041 * 25 14 13 27 27 H 1.08998 * 113.83148 * 265.68181 * 26 25 14 28 28 C 1.46743 * 125.33119 * 179.97438 * 9 7 2 29 29 H 0.97000 * 119.99817 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.75936 * 61.17147 * 10 9 7 31 31 H 1.08996 * 109.76023 * 300.45561 * 10 9 7 32 32 H 1.09003 * 109.77473 * 146.62723 * 13 11 10 33 33 H 1.09005 * 109.77226 * 25.87387 * 13 11 10 34 34 H 1.07999 * 120.04830 * 0.04520 * 18 17 15 35 35 H 1.07995 * 119.89616 * 180.02562 * 19 18 17 36 36 H 1.07998 * 119.85972 * 179.97438 * 20 19 18 37 37 H 1.09001 * 110.02735 * 100.51601 * 25 14 13 38 38 H 1.08998 * 110.02211 * 221.92675 * 25 14 13 39 39 H 1.09004 * 110.00749 * 42.36856 * 28 9 7 40 40 H 1.08996 * 110.01472 * 281.00434 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0016 10 6 -0.1347 -2.5242 0.0017 11 6 -0.4721 -4.0235 0.0237 12 1 -0.8374 -4.3930 -0.9344 13 6 -1.4479 -4.3088 1.1767 14 7 -0.6599 -4.7105 2.3467 15 6 -1.1667 -5.0510 3.5483 16 8 -2.3700 -5.1323 3.6995 17 6 -0.2593 -5.3255 4.6819 18 6 0.8812 -4.5427 4.8726 19 6 1.7250 -4.8034 5.9317 20 6 1.4449 -5.8383 6.8068 21 6 0.3158 -6.6193 6.6263 22 9 0.0517 -7.6312 7.4815 23 6 -0.5392 -6.3683 5.5676 24 17 -1.9546 -7.3475 5.3404 25 6 0.7673 -4.6775 2.0056 26 6 0.8511 -4.7079 0.4665 27 1 0.9780 -5.7079 0.0520 28 6 1.9378 -3.7216 0.0017 29 1 -0.4850 0.8401 0.0004 30 1 -0.5475 -2.0668 -0.8975 31 1 -0.5499 -2.0400 0.8855 32 1 -2.1264 -5.1140 0.8949 33 1 -2.0187 -3.4093 1.4078 34 1 1.1020 -3.7340 4.1918 35 1 2.6067 -4.1975 6.0792 36 1 2.1098 -6.0378 7.6341 37 1 1.2217 -3.7640 2.3891 38 1 1.2710 -5.5493 2.4231 39 1 2.7817 -3.7444 0.6913 40 1 2.2704 -3.9795 -1.0037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049080610.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:33 Heat of formation + Delta-G solvation = -33.331029 kcal Electronic energy + Delta-G solvation = -27237.884017 eV Core-core repulsion = 23186.370566 eV Total energy + Delta-G solvation = -4051.513451 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.10012 -41.83558 -40.29837 -39.05818 -37.65277 -36.58591 -34.15953 -32.82889 -31.81994 -31.22667 -31.09719 -27.52974 -27.03849 -25.68646 -23.91142 -23.86889 -21.80587 -21.15347 -20.74989 -19.16207 -18.65081 -17.90109 -17.82511 -17.70089 -16.99602 -16.86985 -16.46373 -16.29129 -15.83205 -15.54641 -15.37180 -14.70852 -14.65602 -14.38747 -14.32259 -13.91763 -13.64208 -13.53999 -13.36381 -13.23219 -12.87131 -12.83513 -12.71306 -12.62752 -12.59800 -12.17302 -11.95944 -11.86643 -11.81692 -11.50685 -11.34402 -11.06174 -10.65138 -10.19795 -9.88007 -9.69008 -8.82979 -7.80964 -5.15537 -0.48254 -0.18257 0.86134 1.49597 1.50286 1.51476 1.58862 1.80085 2.34795 2.53094 2.89204 3.21889 3.37998 3.45687 3.57529 3.68830 3.75129 3.87307 3.96656 4.03917 4.24099 4.27320 4.32908 4.52920 4.55371 4.57974 4.71015 4.79740 4.85795 4.92496 4.97785 5.08173 5.11263 5.13257 5.22180 5.41074 5.53625 5.53893 5.66773 5.81707 6.25233 6.37423 6.92717 7.15454 7.85116 8.46243 9.28960 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.016650 B = 0.003374 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.260829 B = 8297.495894 C = 9048.148395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.065 4.065 3 Si 0.972 3.028 4 H -0.290 1.290 5 H -0.301 1.301 6 H -0.264 1.264 7 C -0.234 4.234 8 H 0.088 0.912 9 N -0.622 5.622 10 C 0.198 3.802 11 C -0.112 4.112 12 H 0.113 0.887 13 C 0.126 3.874 14 N -0.600 5.600 15 C 0.564 3.436 16 O -0.558 6.558 17 C -0.107 4.107 18 C -0.086 4.086 19 C -0.072 4.072 20 C -0.102 4.102 21 C 0.092 3.908 22 F -0.129 7.129 23 C -0.050 4.050 24 Cl -0.047 7.047 25 C 0.112 3.888 26 C -0.095 4.095 27 H 0.132 0.868 28 C 0.140 3.860 29 H 0.243 0.757 30 H 0.002 0.998 31 H 0.011 0.989 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.147 0.853 35 H 0.186 0.814 36 H 0.187 0.813 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.055 0.945 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.339 -15.087 11.304 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.258 4.258 3 Si 0.801 3.199 4 H -0.218 1.218 5 H -0.228 1.228 6 H -0.188 1.188 7 C -0.363 4.363 8 H 0.106 0.894 9 N -0.348 5.348 10 C 0.073 3.927 11 C -0.132 4.132 12 H 0.131 0.869 13 C 0.003 3.997 14 N -0.332 5.332 15 C 0.353 3.647 16 O -0.438 6.438 17 C -0.111 4.111 18 C -0.105 4.105 19 C -0.090 4.090 20 C -0.121 4.121 21 C 0.072 3.928 22 F -0.108 7.108 23 C -0.079 4.079 24 Cl -0.017 7.017 25 C -0.010 4.010 26 C -0.114 4.114 27 H 0.149 0.851 28 C 0.015 3.985 29 H 0.052 0.948 30 H 0.021 0.979 31 H 0.030 0.970 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.164 0.836 35 H 0.203 0.797 36 H 0.204 0.796 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.073 0.927 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 5.504 -15.073 11.458 19.718 hybrid contribution -0.604 1.149 -0.238 1.319 sum 4.900 -13.925 11.221 18.542 Atomic orbital electron populations 1.70194 1.06342 1.24945 1.58632 1.25575 0.96389 1.00880 1.02938 0.85166 0.77880 0.79576 0.77267 1.21756 1.22847 1.18815 1.19447 0.91123 0.83439 1.42306 0.89378 1.44497 1.01993 1.01355 1.86976 1.20751 0.84264 0.89972 0.97701 1.22999 0.95321 0.96797 0.98051 0.86887 1.21722 0.94053 0.99279 0.84601 1.48177 1.09272 1.65271 1.10452 1.18034 0.87484 0.77235 0.81979 1.90796 1.16133 1.53361 1.83463 1.19512 0.97582 0.97798 0.96233 1.21771 0.91297 0.98258 0.99170 1.21529 0.99971 0.96076 0.91404 1.21763 0.94660 0.93997 1.01659 1.17467 0.96462 0.89820 0.89081 1.91541 1.93895 1.57317 1.68010 1.21131 0.92088 0.96935 0.97755 1.98405 1.38204 1.68557 1.96581 1.22361 0.80339 1.02504 0.95790 1.23013 0.94398 1.00152 0.93862 0.85059 1.21385 0.94840 0.83774 0.98506 0.94774 0.97929 0.97039 0.90538 0.93535 0.83553 0.79653 0.79592 0.91425 0.88262 0.92707 0.95311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.83 10.25 21.65 0.22 -55.61 16 2 C -0.06 -3.53 5.48 84.86 0.47 -3.06 16 3 Si 0.97 43.97 29.55 68.60 2.03 46.00 16 4 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 6 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.23 -12.12 10.25 84.03 0.86 -11.25 16 8 H 0.09 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.62 -28.78 3.37 -697.85 -2.35 -31.13 16 10 C 0.20 9.15 4.75 86.58 0.41 9.56 16 11 C -0.11 -3.70 4.02 -9.49 -0.04 -3.74 16 12 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 13 C 0.13 4.22 6.24 86.59 0.54 4.76 16 14 N -0.60 -18.89 3.31 -820.48 -2.72 -21.61 16 15 C 0.56 18.86 7.14 86.76 0.62 19.48 16 16 O -0.56 -22.38 15.59 -3.90 -0.06 -22.44 16 17 C -0.11 -2.88 5.36 -20.08 -0.11 -2.98 16 18 C -0.09 -1.76 8.33 22.53 0.19 -1.57 16 19 C -0.07 -0.93 10.03 22.23 0.22 -0.71 16 20 C -0.10 -1.33 10.02 22.36 0.22 -1.10 16 21 C 0.09 1.87 7.27 22.36 0.16 2.04 16 22 F -0.13 -2.77 16.83 44.97 0.76 -2.01 16 23 C -0.05 -1.31 6.34 22.65 0.14 -1.17 16 24 Cl -0.05 -1.36 26.47 -2.72 -0.07 -1.43 16 25 C 0.11 2.96 4.57 86.72 0.40 3.35 16 26 C -0.09 -2.57 4.19 -9.25 -0.04 -2.61 16 27 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 28 C 0.14 4.72 6.37 86.65 0.55 5.27 16 29 H 0.24 14.12 8.31 -92.71 -0.77 13.35 16 30 H 0.00 0.13 7.45 -2.38 -0.02 0.11 16 31 H 0.01 0.61 6.51 -2.39 -0.02 0.60 16 32 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.05 1.82 7.44 -2.38 -0.02 1.80 16 34 H 0.15 3.17 5.86 -2.91 -0.02 3.16 16 35 H 0.19 1.06 8.06 -2.91 -0.02 1.04 16 36 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 37 H 0.07 2.01 6.16 -2.39 -0.01 2.00 16 38 H 0.10 2.02 7.63 -2.39 -0.02 2.00 16 39 H 0.05 1.69 7.95 -2.38 -0.02 1.67 16 40 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -71.34 340.86 3.49 -67.85 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: 1.08 Total: 4.14 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 4.60 Total: 16.25 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -4.85 Total: -108.35 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.06 Total: -22.44 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.76 Total: -2.01 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.07 Total: -1.43 kcal Total: -71.34 3.49 -67.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049080610.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.516 kcal (2) G-P(sol) polarization free energy of solvation -71.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds