Wall clock time and date at job start Tue Mar 31 2020 20:30:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86797 * 120.00146 * 2 1
4 4 H 1.48506 * 109.46919 * 274.62366 * 3 2 1
5 5 H 1.48499 * 109.47359 * 34.62263 * 3 2 1
6 6 H 1.48499 * 109.47185 * 154.62851 * 3 2 1
7 7 C 1.38811 * 119.99714 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99654 * 170.53803 * 7 2 1
9 9 N 1.36940 * 120.00224 * 350.54324 * 7 2 1
10 10 C 1.46757 * 125.33367 * 350.00854 * 9 7 2
11 11 C 1.53978 * 106.67704 * 198.42907 * 10 9 7
12 12 H 1.08997 * 112.80068 * 209.36883 * 11 10 9
13 13 C 1.53675 * 109.29560 * 82.34521 * 11 10 9
14 14 N 1.46658 * 107.96797 * 233.06017 * 13 11 10
15 15 C 1.34776 * 125.33558 * 179.28972 * 14 13 11
16 16 O 1.21584 * 119.99952 * 0.02562 * 15 14 13
17 17 C 1.47619 * 120.00462 * 179.97438 * 15 14 13
18 18 C 1.39883 * 120.17991 * 270.00301 * 17 15 14
19 19 F 1.35104 * 120.10364 * 359.97438 * 18 17 15
20 20 C 1.38243 * 119.79636 * 179.97438 * 18 17 15
21 21 C 1.38289 * 120.15172 * 0.02714 * 20 18 17
22 22 C 1.38349 * 120.36000 * 359.94942 * 21 20 18
23 23 C 1.38076 * 120.20735 * 359.79095 * 22 21 20
24 24 Cl 1.73598 * 120.08314 * 180.25455 * 23 22 21
25 25 C 1.46762 * 109.33337 * 359.29183 * 14 13 11
26 26 C 1.53977 * 106.67546 * 18.44862 * 25 14 13
27 27 H 1.08999 * 113.35004 * 209.06251 * 26 25 14
28 28 C 1.46662 * 125.33556 * 169.98372 * 9 7 2
29 29 H 0.97004 * 119.99821 * 0.02562 * 1 2 3
30 30 H 1.08999 * 110.01580 * 317.73809 * 10 9 7
31 31 H 1.09001 * 110.01724 * 79.12485 * 10 9 7
32 32 H 1.08994 * 109.76952 * 352.68666 * 13 11 10
33 33 H 1.08997 * 109.77072 * 113.43248 * 13 11 10
34 34 H 1.07992 * 119.92495 * 179.97438 * 20 18 17
35 35 H 1.07993 * 119.81889 * 179.97438 * 21 20 18
36 36 H 1.08008 * 119.89538 * 180.02562 * 22 21 20
37 37 H 1.09004 * 110.01367 * 259.14426 * 25 14 13
38 38 H 1.08996 * 110.01633 * 137.75809 * 25 14 13
39 39 H 1.09006 * 109.76378 * 59.68353 * 28 9 7
40 40 H 1.08993 * 109.76586 * 298.94626 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4000 2.1028 -1.3956
5 1 1.5000 2.6225 0.7955
6 1 3.5933 1.4138 0.5999
7 6 2.0102 -1.2022 0.0005
8 1 3.0792 -1.2086 -0.1532
9 7 1.3395 -2.3800 0.1959
10 6 -0.0609 -2.4992 0.6185
11 6 -0.2412 -3.9326 1.1512
12 1 -1.2556 -4.3083 1.0177
13 6 0.2451 -3.9981 2.6075
14 7 1.2162 -5.0922 2.7114
15 6 1.8720 -5.4484 3.8337
16 8 1.6762 -4.8436 4.8701
17 6 2.8274 -6.5734 3.8049
18 6 2.3891 -7.8750 4.0701
19 9 1.0890 -8.1076 4.3545
20 6 3.2905 -8.9228 4.0405
21 6 4.6217 -8.6859 3.7502
22 6 5.0619 -7.4011 3.4863
23 6 4.1734 -6.3444 3.5067
24 17 4.7281 -4.7345 3.1686
25 6 1.3619 -5.7386 1.4019
26 6 0.8174 -4.7474 0.3569
27 1 0.4048 -5.2344 -0.5267
28 6 1.9078 -3.7198 0.0151
29 1 -0.4850 0.8401 -0.0004
30 1 -0.2752 -1.7782 1.4074
31 1 -0.7226 -2.3309 -0.2311
32 1 0.7207 -3.0561 2.8800
33 1 -0.5990 -4.1903 3.2697
34 1 2.9545 -9.9284 4.2454
35 1 5.3212 -9.5083 3.7289
36 1 6.1032 -7.2247 3.2600
37 1 0.7847 -6.6629 1.3757
38 1 2.4130 -5.9490 1.2045
39 1 2.7604 -3.8516 0.6815
40 1 2.2250 -3.8491 -1.0195
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049184980.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:30:05
Heat of formation + Delta-G solvation = -42.672090 kcal
Electronic energy + Delta-G solvation = -27646.081663 eV
Core-core repulsion = 23594.163153 eV
Total energy + Delta-G solvation = -4051.918510 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 338.094 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-50.16692 -41.79356 -40.32849 -39.20962 -37.62659 -36.66080 -34.18319 -32.75870
-31.63497 -31.51879 -31.32631 -27.59212 -27.13863 -25.47639 -24.03903 -23.87668
-21.89753 -21.03614 -20.92952 -19.27864 -18.75169 -18.28543 -18.02976 -17.31798
-17.21335 -16.72784 -16.71503 -16.09145 -15.78669 -15.62122 -15.51179 -14.71111
-14.64871 -14.51221 -14.31297 -14.16404 -13.80784 -13.68727 -13.34028 -13.22179
-13.07743 -12.78949 -12.77854 -12.71327 -12.49875 -12.22420 -12.04939 -11.92944
-11.79619 -11.62763 -11.51026 -11.27447 -10.69661 -10.16465 -9.88966 -9.80751
-8.84678 -7.90956 -5.23927 -0.32820 -0.13450 0.86573 1.23128 1.40927
1.43244 1.51814 1.78590 2.27655 2.46128 2.97033 3.13670 3.26247
3.38127 3.59902 3.70834 3.75718 3.80410 3.90957 4.10255 4.14594
4.22677 4.25721 4.44483 4.51486 4.61842 4.73440 4.77387 4.83641
4.85912 4.99292 5.00372 5.06591 5.11142 5.16714 5.31761 5.43927
5.53352 5.57682 5.71490 6.19552 6.29395 6.81667 7.08659 7.77264
8.40062 9.20666
Molecular weight = 338.09amu
Principal moments of inertia in cm(-1)
A = 0.016889 B = 0.003902 C = 0.003523
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1657.476389 B = 7173.824105 C = 7944.941482
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.943 5.943
2 C -0.058 4.058
3 Si 0.969 3.031
4 H -0.281 1.281
5 H -0.293 1.293
6 H -0.276 1.276
7 C -0.242 4.242
8 H 0.072 0.928
9 N -0.619 5.619
10 C 0.194 3.806
11 C -0.107 4.107
12 H 0.127 0.873
13 C 0.127 3.873
14 N -0.594 5.594
15 C 0.572 3.428
16 O -0.575 6.575
17 C -0.171 4.171
18 C 0.125 3.875
19 F -0.137 7.137
20 C -0.133 4.133
21 C -0.040 4.040
22 C -0.112 4.112
23 C -0.002 4.002
24 Cl -0.063 7.063
25 C 0.115 3.885
26 C -0.092 4.092
27 H 0.137 0.863
28 C 0.139 3.861
29 H 0.248 0.752
30 H 0.019 0.981
31 H 0.012 0.988
32 H 0.033 0.967
33 H 0.069 0.931
34 H 0.183 0.817
35 H 0.198 0.802
36 H 0.172 0.828
37 H 0.100 0.900
38 H 0.081 0.919
39 H 0.017 0.983
40 H 0.028 0.972
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.474 -25.192 4.422 26.944
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.592 5.592
2 C -0.252 4.252
3 Si 0.797 3.203
4 H -0.208 1.208
5 H -0.220 1.220
6 H -0.201 1.201
7 C -0.371 4.371
8 H 0.090 0.910
9 N -0.345 5.345
10 C 0.069 3.931
11 C -0.127 4.127
12 H 0.145 0.855
13 C 0.004 3.996
14 N -0.324 5.324
15 C 0.360 3.640
16 O -0.456 6.456
17 C -0.176 4.176
18 C 0.105 3.895
19 F -0.116 7.116
20 C -0.152 4.152
21 C -0.058 4.058
22 C -0.130 4.130
23 C -0.029 4.029
24 Cl -0.034 7.034
25 C -0.007 4.007
26 C -0.111 4.111
27 H 0.155 0.845
28 C 0.014 3.986
29 H 0.057 0.943
30 H 0.038 0.962
31 H 0.030 0.970
32 H 0.052 0.948
33 H 0.087 0.913
34 H 0.200 0.800
35 H 0.215 0.785
36 H 0.190 0.810
37 H 0.118 0.882
38 H 0.100 0.900
39 H 0.035 0.965
40 H 0.046 0.954
Dipole moment (debyes) X Y Z Total
from point charges 8.364 -24.536 4.983 26.397
hybrid contribution -0.163 2.183 0.134 2.193
sum 8.202 -22.354 5.117 24.354
Atomic orbital electron populations
1.70131 1.06112 1.25405 1.57533 1.25543 0.96457 1.00728 1.02436
0.85213 0.77716 0.79777 0.77553 1.20752 1.21998 1.20069 1.19276
0.91345 0.84317 1.42204 0.90985 1.44424 1.09860 1.01007 1.79168
1.20802 0.85296 0.91232 0.95778 1.23077 1.00435 0.97234 0.91965
0.85519 1.21685 0.91125 0.88921 0.97832 1.48234 1.41284 1.33141
1.09791 1.17993 0.80081 0.83507 0.82385 1.90780 1.66355 1.56152
1.32278 1.19651 0.94045 0.93310 1.10546 1.17777 0.79306 0.91908
1.00544 1.91534 1.34349 1.94892 1.90792 1.21660 0.93100 0.99262
1.01133 1.21699 0.94968 0.96867 0.92259 1.21538 1.00764 0.90836
0.99901 1.20986 0.91944 0.88117 1.01868 1.98462 1.89166 1.22638
1.93145 1.22173 1.02359 0.96022 0.80188 1.22876 0.94939 0.94765
0.98523 0.84517 1.21333 0.95015 0.84658 0.97591 0.94263 0.96225
0.97014 0.94818 0.91259 0.79952 0.78462 0.81012 0.88230 0.90049
0.96477 0.95418
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -57.33 10.62 21.65 0.23 -57.10 16
2 C -0.06 -3.36 5.40 84.86 0.46 -2.90 16
3 Si 0.97 47.24 29.56 68.60 2.03 49.27 16
4 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16
5 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16
6 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16
7 C -0.24 -13.95 10.21 84.03 0.86 -13.09 16
8 H 0.07 4.06 7.85 -2.91 -0.02 4.04 16
9 N -0.62 -31.97 3.38 -697.73 -2.35 -34.32 16
10 C 0.19 9.45 4.55 86.66 0.39 9.85 16
11 C -0.11 -3.79 4.09 -9.41 -0.04 -3.82 16
12 H 0.13 3.63 8.14 -2.39 -0.02 3.61 16
13 C 0.13 4.87 6.24 86.58 0.54 5.41 16
14 N -0.59 -20.35 3.31 -821.20 -2.72 -23.06 16
15 C 0.57 20.90 5.97 86.72 0.52 21.42 16
16 O -0.58 -26.12 17.41 -3.98 -0.07 -26.19 16
17 C -0.17 -4.69 4.58 -20.04 -0.09 -4.78 16
18 C 0.12 2.67 7.29 22.67 0.17 2.83 16
19 F -0.14 -3.41 16.83 44.97 0.76 -2.65 16
20 C -0.13 -1.46 10.01 22.28 0.22 -1.24 16
21 C -0.04 -0.29 10.03 22.31 0.22 -0.06 16
22 C -0.11 -1.48 9.81 22.26 0.22 -1.26 16
23 C 0.00 -0.04 6.35 22.60 0.14 0.11 16
24 Cl -0.06 -1.89 28.04 -2.72 -0.08 -1.96 16
25 C 0.11 3.02 5.77 86.66 0.50 3.52 16
26 C -0.09 -2.78 4.09 -9.41 -0.04 -2.82 16
27 H 0.14 3.23 8.14 -2.39 -0.02 3.21 16
28 C 0.14 5.60 6.63 86.57 0.57 6.18 16
29 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16
30 H 0.02 1.10 6.87 -2.39 -0.02 1.08 16
31 H 0.01 0.63 7.80 -2.39 -0.02 0.61 16
32 H 0.03 1.60 7.47 -2.39 -0.02 1.58 16
33 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16
34 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16
35 H 0.20 -0.44 8.06 -2.91 -0.02 -0.47 16
36 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16
37 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16
38 H 0.08 2.03 7.45 -2.39 -0.02 2.01 16
39 H 0.02 0.72 7.47 -2.38 -0.02 0.70 16
40 H 0.03 1.09 8.14 -2.39 -0.02 1.08 16
Total: -1.00 -80.83 349.60 3.52 -77.31
By element:
Atomic # 1 Polarization: -1.69 SS G_CDS: 1.07 Total: -0.61 kcal
Atomic # 6 Polarization: 14.68 SS G_CDS: 4.65 Total: 19.33 kcal
Atomic # 7 Polarization: -109.64 SS G_CDS: -4.84 Total: -114.48 kcal
Atomic # 8 Polarization: -26.12 SS G_CDS: -0.07 Total: -26.19 kcal
Atomic # 9 Polarization: -3.41 SS G_CDS: 0.76 Total: -2.65 kcal
Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal
Atomic # 17 Polarization: -1.89 SS G_CDS: -0.08 Total: -1.96 kcal
Total: -80.83 3.52 -77.31 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049184980.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.639 kcal
(2) G-P(sol) polarization free energy of solvation -80.828 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.189 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.311 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.672 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds