Wall clock time and date at job start Tue Mar 31 2020 20:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00146 * 2 1 4 4 H 1.48506 * 109.46919 * 274.62366 * 3 2 1 5 5 H 1.48499 * 109.47359 * 34.62263 * 3 2 1 6 6 H 1.48499 * 109.47185 * 154.62851 * 3 2 1 7 7 C 1.38811 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99654 * 170.53803 * 7 2 1 9 9 N 1.36940 * 120.00224 * 350.54324 * 7 2 1 10 10 C 1.46757 * 125.33367 * 350.00854 * 9 7 2 11 11 C 1.53978 * 106.67704 * 198.42907 * 10 9 7 12 12 H 1.08997 * 112.80068 * 209.36883 * 11 10 9 13 13 C 1.53675 * 109.29560 * 82.34521 * 11 10 9 14 14 N 1.46658 * 107.96797 * 233.06017 * 13 11 10 15 15 C 1.34776 * 125.33558 * 179.28972 * 14 13 11 16 16 O 1.21584 * 119.99952 * 0.02562 * 15 14 13 17 17 C 1.47619 * 120.00462 * 179.97438 * 15 14 13 18 18 C 1.39883 * 120.17991 * 270.00301 * 17 15 14 19 19 F 1.35104 * 120.10364 * 359.97438 * 18 17 15 20 20 C 1.38243 * 119.79636 * 179.97438 * 18 17 15 21 21 C 1.38289 * 120.15172 * 0.02714 * 20 18 17 22 22 C 1.38349 * 120.36000 * 359.94942 * 21 20 18 23 23 C 1.38076 * 120.20735 * 359.79095 * 22 21 20 24 24 Cl 1.73598 * 120.08314 * 180.25455 * 23 22 21 25 25 C 1.46762 * 109.33337 * 359.29183 * 14 13 11 26 26 C 1.53977 * 106.67546 * 18.44862 * 25 14 13 27 27 H 1.08999 * 113.35004 * 209.06251 * 26 25 14 28 28 C 1.46662 * 125.33556 * 169.98372 * 9 7 2 29 29 H 0.97004 * 119.99821 * 0.02562 * 1 2 3 30 30 H 1.08999 * 110.01580 * 317.73809 * 10 9 7 31 31 H 1.09001 * 110.01724 * 79.12485 * 10 9 7 32 32 H 1.08994 * 109.76952 * 352.68666 * 13 11 10 33 33 H 1.08997 * 109.77072 * 113.43248 * 13 11 10 34 34 H 1.07992 * 119.92495 * 179.97438 * 20 18 17 35 35 H 1.07993 * 119.81889 * 179.97438 * 21 20 18 36 36 H 1.08008 * 119.89538 * 180.02562 * 22 21 20 37 37 H 1.09004 * 110.01367 * 259.14426 * 25 14 13 38 38 H 1.08996 * 110.01633 * 137.75809 * 25 14 13 39 39 H 1.09006 * 109.76378 * 59.68353 * 28 9 7 40 40 H 1.08993 * 109.76586 * 298.94626 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4000 2.1028 -1.3956 5 1 1.5000 2.6225 0.7955 6 1 3.5933 1.4138 0.5999 7 6 2.0102 -1.2022 0.0005 8 1 3.0792 -1.2086 -0.1532 9 7 1.3395 -2.3800 0.1959 10 6 -0.0609 -2.4992 0.6185 11 6 -0.2412 -3.9326 1.1512 12 1 -1.2556 -4.3083 1.0177 13 6 0.2451 -3.9981 2.6075 14 7 1.2162 -5.0922 2.7114 15 6 1.8720 -5.4484 3.8337 16 8 1.6762 -4.8436 4.8701 17 6 2.8274 -6.5734 3.8049 18 6 2.3891 -7.8750 4.0701 19 9 1.0890 -8.1076 4.3545 20 6 3.2905 -8.9228 4.0405 21 6 4.6217 -8.6859 3.7502 22 6 5.0619 -7.4011 3.4863 23 6 4.1734 -6.3444 3.5067 24 17 4.7281 -4.7345 3.1686 25 6 1.3619 -5.7386 1.4019 26 6 0.8174 -4.7474 0.3569 27 1 0.4048 -5.2344 -0.5267 28 6 1.9078 -3.7198 0.0151 29 1 -0.4850 0.8401 -0.0004 30 1 -0.2752 -1.7782 1.4074 31 1 -0.7226 -2.3309 -0.2311 32 1 0.7207 -3.0561 2.8800 33 1 -0.5990 -4.1903 3.2697 34 1 2.9545 -9.9284 4.2454 35 1 5.3212 -9.5083 3.7289 36 1 6.1032 -7.2247 3.2600 37 1 0.7847 -6.6629 1.3757 38 1 2.4130 -5.9490 1.2045 39 1 2.7604 -3.8516 0.6815 40 1 2.2250 -3.8491 -1.0195 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049184980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:05 Heat of formation + Delta-G solvation = -42.672090 kcal Electronic energy + Delta-G solvation = -27646.081663 eV Core-core repulsion = 23594.163153 eV Total energy + Delta-G solvation = -4051.918510 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.16692 -41.79356 -40.32849 -39.20962 -37.62659 -36.66080 -34.18319 -32.75870 -31.63497 -31.51879 -31.32631 -27.59212 -27.13863 -25.47639 -24.03903 -23.87668 -21.89753 -21.03614 -20.92952 -19.27864 -18.75169 -18.28543 -18.02976 -17.31798 -17.21335 -16.72784 -16.71503 -16.09145 -15.78669 -15.62122 -15.51179 -14.71111 -14.64871 -14.51221 -14.31297 -14.16404 -13.80784 -13.68727 -13.34028 -13.22179 -13.07743 -12.78949 -12.77854 -12.71327 -12.49875 -12.22420 -12.04939 -11.92944 -11.79619 -11.62763 -11.51026 -11.27447 -10.69661 -10.16465 -9.88966 -9.80751 -8.84678 -7.90956 -5.23927 -0.32820 -0.13450 0.86573 1.23128 1.40927 1.43244 1.51814 1.78590 2.27655 2.46128 2.97033 3.13670 3.26247 3.38127 3.59902 3.70834 3.75718 3.80410 3.90957 4.10255 4.14594 4.22677 4.25721 4.44483 4.51486 4.61842 4.73440 4.77387 4.83641 4.85912 4.99292 5.00372 5.06591 5.11142 5.16714 5.31761 5.43927 5.53352 5.57682 5.71490 6.19552 6.29395 6.81667 7.08659 7.77264 8.40062 9.20666 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.016889 B = 0.003902 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.476389 B = 7173.824105 C = 7944.941482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.058 4.058 3 Si 0.969 3.031 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.619 5.619 10 C 0.194 3.806 11 C -0.107 4.107 12 H 0.127 0.873 13 C 0.127 3.873 14 N -0.594 5.594 15 C 0.572 3.428 16 O -0.575 6.575 17 C -0.171 4.171 18 C 0.125 3.875 19 F -0.137 7.137 20 C -0.133 4.133 21 C -0.040 4.040 22 C -0.112 4.112 23 C -0.002 4.002 24 Cl -0.063 7.063 25 C 0.115 3.885 26 C -0.092 4.092 27 H 0.137 0.863 28 C 0.139 3.861 29 H 0.248 0.752 30 H 0.019 0.981 31 H 0.012 0.988 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.183 0.817 35 H 0.198 0.802 36 H 0.172 0.828 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.017 0.983 40 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.474 -25.192 4.422 26.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.252 4.252 3 Si 0.797 3.203 4 H -0.208 1.208 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.345 5.345 10 C 0.069 3.931 11 C -0.127 4.127 12 H 0.145 0.855 13 C 0.004 3.996 14 N -0.324 5.324 15 C 0.360 3.640 16 O -0.456 6.456 17 C -0.176 4.176 18 C 0.105 3.895 19 F -0.116 7.116 20 C -0.152 4.152 21 C -0.058 4.058 22 C -0.130 4.130 23 C -0.029 4.029 24 Cl -0.034 7.034 25 C -0.007 4.007 26 C -0.111 4.111 27 H 0.155 0.845 28 C 0.014 3.986 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.030 0.970 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.200 0.800 35 H 0.215 0.785 36 H 0.190 0.810 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.035 0.965 40 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 8.364 -24.536 4.983 26.397 hybrid contribution -0.163 2.183 0.134 2.193 sum 8.202 -22.354 5.117 24.354 Atomic orbital electron populations 1.70131 1.06112 1.25405 1.57533 1.25543 0.96457 1.00728 1.02436 0.85213 0.77716 0.79777 0.77553 1.20752 1.21998 1.20069 1.19276 0.91345 0.84317 1.42204 0.90985 1.44424 1.09860 1.01007 1.79168 1.20802 0.85296 0.91232 0.95778 1.23077 1.00435 0.97234 0.91965 0.85519 1.21685 0.91125 0.88921 0.97832 1.48234 1.41284 1.33141 1.09791 1.17993 0.80081 0.83507 0.82385 1.90780 1.66355 1.56152 1.32278 1.19651 0.94045 0.93310 1.10546 1.17777 0.79306 0.91908 1.00544 1.91534 1.34349 1.94892 1.90792 1.21660 0.93100 0.99262 1.01133 1.21699 0.94968 0.96867 0.92259 1.21538 1.00764 0.90836 0.99901 1.20986 0.91944 0.88117 1.01868 1.98462 1.89166 1.22638 1.93145 1.22173 1.02359 0.96022 0.80188 1.22876 0.94939 0.94765 0.98523 0.84517 1.21333 0.95015 0.84658 0.97591 0.94263 0.96225 0.97014 0.94818 0.91259 0.79952 0.78462 0.81012 0.88230 0.90049 0.96477 0.95418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.33 10.62 21.65 0.23 -57.10 16 2 C -0.06 -3.36 5.40 84.86 0.46 -2.90 16 3 Si 0.97 47.24 29.56 68.60 2.03 49.27 16 4 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 7 C -0.24 -13.95 10.21 84.03 0.86 -13.09 16 8 H 0.07 4.06 7.85 -2.91 -0.02 4.04 16 9 N -0.62 -31.97 3.38 -697.73 -2.35 -34.32 16 10 C 0.19 9.45 4.55 86.66 0.39 9.85 16 11 C -0.11 -3.79 4.09 -9.41 -0.04 -3.82 16 12 H 0.13 3.63 8.14 -2.39 -0.02 3.61 16 13 C 0.13 4.87 6.24 86.58 0.54 5.41 16 14 N -0.59 -20.35 3.31 -821.20 -2.72 -23.06 16 15 C 0.57 20.90 5.97 86.72 0.52 21.42 16 16 O -0.58 -26.12 17.41 -3.98 -0.07 -26.19 16 17 C -0.17 -4.69 4.58 -20.04 -0.09 -4.78 16 18 C 0.12 2.67 7.29 22.67 0.17 2.83 16 19 F -0.14 -3.41 16.83 44.97 0.76 -2.65 16 20 C -0.13 -1.46 10.01 22.28 0.22 -1.24 16 21 C -0.04 -0.29 10.03 22.31 0.22 -0.06 16 22 C -0.11 -1.48 9.81 22.26 0.22 -1.26 16 23 C 0.00 -0.04 6.35 22.60 0.14 0.11 16 24 Cl -0.06 -1.89 28.04 -2.72 -0.08 -1.96 16 25 C 0.11 3.02 5.77 86.66 0.50 3.52 16 26 C -0.09 -2.78 4.09 -9.41 -0.04 -2.82 16 27 H 0.14 3.23 8.14 -2.39 -0.02 3.21 16 28 C 0.14 5.60 6.63 86.57 0.57 6.18 16 29 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 30 H 0.02 1.10 6.87 -2.39 -0.02 1.08 16 31 H 0.01 0.63 7.80 -2.39 -0.02 0.61 16 32 H 0.03 1.60 7.47 -2.39 -0.02 1.58 16 33 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 35 H 0.20 -0.44 8.06 -2.91 -0.02 -0.47 16 36 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.08 2.03 7.45 -2.39 -0.02 2.01 16 39 H 0.02 0.72 7.47 -2.38 -0.02 0.70 16 40 H 0.03 1.09 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -80.83 349.60 3.52 -77.31 By element: Atomic # 1 Polarization: -1.69 SS G_CDS: 1.07 Total: -0.61 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: 4.65 Total: 19.33 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -4.84 Total: -114.48 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.07 Total: -26.19 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.76 Total: -2.65 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.08 Total: -1.96 kcal Total: -80.83 3.52 -77.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049184980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.639 kcal (2) G-P(sol) polarization free energy of solvation -80.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds