Wall clock time and date at job start Tue Mar 31 2020 20:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99910 * 2 1 4 4 H 1.48497 * 109.46927 * 269.99319 * 3 2 1 5 5 H 1.48500 * 109.46924 * 29.99478 * 3 2 1 6 6 H 1.48505 * 109.46930 * 149.99430 * 3 2 1 7 7 C 1.38807 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00275 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00086 * 0.02562 * 7 2 1 10 10 C 1.46636 * 125.33006 * 0.02562 * 9 7 2 11 11 C 1.53693 * 108.01171 * 180.81820 * 10 9 7 12 12 H 1.09004 * 113.05512 * 253.80490 * 11 10 9 13 13 C 1.53728 * 109.34047 * 127.55583 * 11 10 9 14 14 N 1.46664 * 107.94500 * 266.25340 * 13 11 10 15 15 C 1.34775 * 125.33983 * 180.54729 * 14 13 11 16 16 O 1.21571 * 119.99929 * 5.24681 * 15 14 13 17 17 C 1.47655 * 119.99676 * 185.24797 * 15 14 13 18 18 C 1.39689 * 120.13266 * 39.57095 * 17 15 14 19 19 C 1.37774 * 119.89289 * 180.27655 * 18 17 15 20 20 C 1.38723 * 120.15773 * 359.51044 * 19 18 17 21 21 F 1.35098 * 119.87093 * 180.25392 * 20 19 18 22 22 C 1.38561 * 120.25787 * 0.47103 * 20 19 18 23 23 C 1.38038 * 120.10810 * 359.78554 * 22 20 19 24 24 Cl 1.73593 * 120.07999 * 179.97438 * 23 22 20 25 25 C 1.46777 * 109.32223 * 0.80767 * 14 13 11 26 26 C 1.54167 * 106.52682 * 341.09416 * 25 14 13 27 27 H 1.08998 * 113.83260 * 265.68196 * 26 25 14 28 28 C 1.46750 * 125.33282 * 179.97438 * 9 7 2 29 29 H 0.96999 * 119.99980 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.75969 * 61.17290 * 10 9 7 31 31 H 1.09005 * 109.76118 * 300.45707 * 10 9 7 32 32 H 1.08995 * 109.77175 * 146.62928 * 13 11 10 33 33 H 1.09004 * 109.77263 * 25.87285 * 13 11 10 34 34 H 1.08005 * 120.05347 * 359.97438 * 18 17 15 35 35 H 1.08002 * 119.92250 * 179.74586 * 19 18 17 36 36 H 1.07998 * 119.94495 * 179.76936 * 22 20 19 37 37 H 1.08998 * 110.02682 * 100.51019 * 25 14 13 38 38 H 1.08996 * 110.03255 * 221.92961 * 25 14 13 39 39 H 1.09006 * 110.00783 * 42.36196 * 28 9 7 40 40 H 1.08998 * 110.00606 * 280.99680 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1344 -2.5243 -0.0005 11 6 -0.4718 -4.0236 0.0207 12 1 -0.8364 -4.3927 -0.9379 13 6 -1.4486 -4.3093 1.1729 14 7 -0.6615 -4.7114 2.3433 15 6 -1.1691 -5.0523 3.5444 16 8 -2.3727 -5.1337 3.6947 17 6 -0.2632 -5.3270 4.6776 18 6 0.8766 -4.5427 4.8703 19 6 1.7215 -4.8069 5.9260 20 6 1.4375 -5.8432 6.8035 21 9 2.2672 -6.0939 7.8397 22 6 0.3085 -6.6249 6.6186 23 6 -0.5427 -6.3731 5.5615 24 17 -1.9566 -7.3534 5.3302 25 6 0.7660 -4.6783 2.0034 26 6 0.8511 -4.7080 0.4643 27 1 0.9783 -5.7079 0.0495 28 6 1.9381 -3.7216 0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5466 -2.0664 -0.8998 31 1 -0.5504 -2.0404 0.8832 32 1 -2.1267 -5.1144 0.8903 33 1 -2.0196 -3.4100 1.4039 34 1 1.0977 -3.7336 4.1900 35 1 2.6050 -4.2034 6.0730 36 1 0.0942 -7.4328 7.3026 37 1 1.2201 -3.7649 2.3875 38 1 1.2696 -5.5501 2.4209 39 1 2.7815 -3.7446 0.6907 40 1 2.2713 -3.9789 -1.0049 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049201915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:38 Heat of formation + Delta-G solvation = -18.101918 kcal Electronic energy + Delta-G solvation = -27158.862605 eV Core-core repulsion = 23108.009538 eV Total energy + Delta-G solvation = -4050.853068 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.31187 -40.61611 -39.16405 -37.81300 -36.64543 -35.00699 -32.47071 -31.60863 -31.11596 -29.97056 -29.47729 -25.80670 -25.60137 -24.15070 -23.36846 -22.51464 -20.17279 -19.93437 -19.35992 -18.09743 -17.53397 -16.93990 -16.76473 -16.28899 -15.98138 -15.29220 -15.15027 -14.77985 -14.38689 -14.28730 -14.02518 -13.70512 -13.56975 -13.43065 -13.05853 -12.78744 -12.59588 -12.12157 -12.06417 -11.71470 -11.57881 -11.53437 -11.37237 -11.18218 -10.94967 -10.86115 -10.47996 -10.16307 -10.14324 -9.92970 -9.80379 -9.68967 -9.36136 -9.02177 -8.66840 -8.38472 -6.90955 -5.79000 -3.13294 0.37622 0.69849 1.79000 2.59825 3.02824 3.30046 3.35234 3.40473 3.42689 3.82106 4.28744 4.36671 4.43422 4.54969 4.74614 4.81426 4.94428 5.05502 5.19197 5.43572 5.44521 5.48436 5.52630 5.58448 5.61387 5.72311 5.77311 5.81939 5.91897 6.10886 6.21898 6.28682 6.29631 6.47639 6.51119 6.55642 6.74248 7.49019 7.50704 7.64380 7.75039 8.19223 8.21059 9.15001 9.75519 10.38690 11.32236 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013778 B = 0.003540 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.670900 B = 7908.747507 C = 8993.471029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.184 3.816 11 C -0.123 4.123 12 H 0.092 0.908 13 C 0.122 3.878 14 N -0.599 5.599 15 C 0.569 3.431 16 O -0.522 6.522 17 C -0.126 4.126 18 C -0.045 4.045 19 C -0.153 4.153 20 C 0.131 3.869 21 F -0.130 7.130 22 C -0.157 4.157 23 C 0.034 3.966 24 Cl -0.031 7.031 25 C 0.108 3.892 26 C -0.111 4.111 27 H 0.091 0.909 28 C 0.145 3.855 29 H 0.253 0.747 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.156 0.844 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.038 0.962 40 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.872 -14.429 9.905 17.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.201 4.201 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.361 4.361 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.059 3.941 11 C -0.143 4.143 12 H 0.110 0.890 13 C 0.000 4.000 14 N -0.332 5.332 15 C 0.357 3.643 16 O -0.398 6.398 17 C -0.130 4.130 18 C -0.063 4.063 19 C -0.172 4.172 20 C 0.111 3.889 21 F -0.108 7.108 22 C -0.177 4.177 23 C 0.006 3.994 24 Cl -0.002 7.002 25 C -0.014 4.014 26 C -0.131 4.131 27 H 0.109 0.891 28 C 0.018 3.982 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.174 0.826 35 H 0.168 0.832 36 H 0.169 0.831 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 1.028 -14.348 10.073 17.561 hybrid contribution 0.565 0.816 0.164 1.006 sum 1.593 -13.532 10.237 17.043 Atomic orbital electron populations 1.69949 1.04876 1.25180 1.56677 1.24793 0.95685 0.97688 1.01956 0.86143 0.78583 0.83523 0.77628 1.21564 1.21676 1.20676 1.19018 0.90433 0.82263 1.44356 0.90363 1.44217 1.01469 0.99916 1.87314 1.21127 0.84565 0.86749 1.01629 1.23171 0.93777 1.00477 0.96845 0.88994 1.21863 0.93912 0.99979 0.84252 1.48123 1.08536 1.65772 1.10777 1.17520 0.87468 0.77999 0.81331 1.90825 1.14359 1.51770 1.82880 1.19889 0.97455 0.97824 0.97815 1.21477 0.90590 0.97850 0.96429 1.21240 1.02269 0.98312 0.95331 1.17660 0.89044 0.95970 0.86255 1.91543 1.70159 1.93508 1.55600 1.20892 0.94565 1.02688 0.99551 1.20605 0.90422 0.93465 0.94900 1.98423 1.37332 1.68067 1.96330 1.22304 0.81320 1.01653 0.96160 1.22953 0.97344 0.99288 0.93514 0.89095 1.21171 0.93649 0.85716 0.97618 0.93643 0.93699 0.93013 0.92004 0.90621 0.82638 0.83225 0.83137 0.90060 0.91526 0.94388 0.96156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.83 10.25 55.49 0.57 -25.26 16 2 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 3 Si 0.91 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.23 -6.05 10.25 -15.06 -0.15 -6.20 16 8 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 9 N -0.60 -14.00 3.37 -171.92 -0.58 -14.58 16 10 C 0.18 4.09 4.75 -3.61 -0.02 4.08 16 11 C -0.12 -2.06 4.02 -88.60 -0.36 -2.42 16 12 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 13 C 0.12 2.00 6.24 -3.57 -0.02 1.98 16 14 N -0.60 -9.46 3.31 -173.35 -0.57 -10.04 16 15 C 0.57 9.28 7.13 -12.42 -0.09 9.19 16 16 O -0.52 -9.88 15.60 5.30 0.08 -9.80 16 17 C -0.13 -1.70 5.36 -104.94 -0.56 -2.26 16 18 C -0.04 -0.52 8.33 -39.21 -0.33 -0.85 16 19 C -0.15 -1.50 10.01 -39.57 -0.40 -1.90 16 20 C 0.13 1.32 7.31 -39.28 -0.29 1.03 16 21 F -0.13 -1.31 17.26 2.25 0.04 -1.27 16 22 C -0.16 -1.61 9.79 -39.54 -0.39 -1.99 16 23 C 0.03 0.42 6.33 -39.08 -0.25 0.18 16 24 Cl -0.03 -0.40 26.81 -51.86 -1.39 -1.79 16 25 C 0.11 1.55 4.57 -3.28 -0.01 1.53 16 26 C -0.11 -1.67 4.19 -88.24 -0.37 -2.04 16 27 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 28 C 0.15 2.63 6.37 -3.41 -0.02 2.61 16 29 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.04 1.13 7.46 -51.93 -0.39 0.75 16 31 H 0.05 1.30 6.50 -51.93 -0.34 0.97 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 1.37 7.44 -51.93 -0.39 0.99 16 34 H 0.16 1.84 5.86 -52.48 -0.31 1.53 16 35 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.08 1.28 6.16 -51.93 -0.32 0.96 16 38 H 0.07 0.80 7.63 -51.93 -0.40 0.40 16 39 H 0.04 0.65 7.95 -51.93 -0.41 0.24 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 341.42 15.07 5.15 5.15 Total: -1.00 -30.03 341.42 -9.71 -39.74 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -4.63 Total: -1.04 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -3.35 Total: 2.70 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -0.58 Total: -49.88 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.39 Total: -1.79 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.03 -9.71 -39.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049201915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.641 kcal (2) G-P(sol) polarization free energy of solvation -30.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds