Wall clock time and date at job start Tue Mar 31 2020 20:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99910 * 2 1 4 4 H 1.48497 * 109.46927 * 269.99319 * 3 2 1 5 5 H 1.48500 * 109.46924 * 29.99478 * 3 2 1 6 6 H 1.48505 * 109.46930 * 149.99430 * 3 2 1 7 7 C 1.38807 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00275 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00086 * 0.02562 * 7 2 1 10 10 C 1.46636 * 125.33006 * 0.02562 * 9 7 2 11 11 C 1.53693 * 108.01171 * 180.81820 * 10 9 7 12 12 H 1.09004 * 113.05512 * 253.80490 * 11 10 9 13 13 C 1.53728 * 109.34047 * 127.55583 * 11 10 9 14 14 N 1.46664 * 107.94500 * 266.25340 * 13 11 10 15 15 C 1.34775 * 125.33983 * 180.54729 * 14 13 11 16 16 O 1.21571 * 119.99929 * 5.24681 * 15 14 13 17 17 C 1.47655 * 119.99676 * 185.24797 * 15 14 13 18 18 C 1.39689 * 120.13266 * 39.57095 * 17 15 14 19 19 C 1.37774 * 119.89289 * 180.27655 * 18 17 15 20 20 C 1.38723 * 120.15773 * 359.51044 * 19 18 17 21 21 F 1.35098 * 119.87093 * 180.25392 * 20 19 18 22 22 C 1.38561 * 120.25787 * 0.47103 * 20 19 18 23 23 C 1.38038 * 120.10810 * 359.78554 * 22 20 19 24 24 Cl 1.73593 * 120.07999 * 179.97438 * 23 22 20 25 25 C 1.46777 * 109.32223 * 0.80767 * 14 13 11 26 26 C 1.54167 * 106.52682 * 341.09416 * 25 14 13 27 27 H 1.08998 * 113.83260 * 265.68196 * 26 25 14 28 28 C 1.46750 * 125.33282 * 179.97438 * 9 7 2 29 29 H 0.96999 * 119.99980 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.75969 * 61.17290 * 10 9 7 31 31 H 1.09005 * 109.76118 * 300.45707 * 10 9 7 32 32 H 1.08995 * 109.77175 * 146.62928 * 13 11 10 33 33 H 1.09004 * 109.77263 * 25.87285 * 13 11 10 34 34 H 1.08005 * 120.05347 * 359.97438 * 18 17 15 35 35 H 1.08002 * 119.92250 * 179.74586 * 19 18 17 36 36 H 1.07998 * 119.94495 * 179.76936 * 22 20 19 37 37 H 1.08998 * 110.02682 * 100.51019 * 25 14 13 38 38 H 1.08996 * 110.03255 * 221.92961 * 25 14 13 39 39 H 1.09006 * 110.00783 * 42.36196 * 28 9 7 40 40 H 1.08998 * 110.00606 * 280.99680 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1344 -2.5243 -0.0005 11 6 -0.4718 -4.0236 0.0207 12 1 -0.8364 -4.3927 -0.9379 13 6 -1.4486 -4.3093 1.1729 14 7 -0.6615 -4.7114 2.3433 15 6 -1.1691 -5.0523 3.5444 16 8 -2.3727 -5.1337 3.6947 17 6 -0.2632 -5.3270 4.6776 18 6 0.8766 -4.5427 4.8703 19 6 1.7215 -4.8069 5.9260 20 6 1.4375 -5.8432 6.8035 21 9 2.2672 -6.0939 7.8397 22 6 0.3085 -6.6249 6.6186 23 6 -0.5427 -6.3731 5.5615 24 17 -1.9566 -7.3534 5.3302 25 6 0.7660 -4.6783 2.0034 26 6 0.8511 -4.7080 0.4643 27 1 0.9783 -5.7079 0.0495 28 6 1.9381 -3.7216 0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5466 -2.0664 -0.8998 31 1 -0.5504 -2.0404 0.8832 32 1 -2.1267 -5.1144 0.8903 33 1 -2.0196 -3.4100 1.4039 34 1 1.0977 -3.7336 4.1900 35 1 2.6050 -4.2034 6.0730 36 1 0.0942 -7.4328 7.3026 37 1 1.2201 -3.7649 2.3875 38 1 1.2696 -5.5501 2.4209 39 1 2.7815 -3.7446 0.6907 40 1 2.2713 -3.9789 -1.0049 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049201915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:37 Heat of formation + Delta-G solvation = -34.633551 kcal Electronic energy + Delta-G solvation = -27159.579471 eV Core-core repulsion = 23108.009538 eV Total energy + Delta-G solvation = -4051.569933 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.11484 -41.82420 -40.32366 -39.04687 -37.58813 -36.57157 -34.15537 -32.77212 -32.05725 -31.23185 -31.08191 -27.45838 -27.04098 -25.46874 -24.26731 -23.74675 -21.80343 -21.09233 -20.72934 -19.06223 -18.82942 -18.42436 -17.80741 -17.60842 -16.81350 -16.59515 -16.47697 -16.01052 -15.81533 -15.54139 -15.19410 -15.00400 -14.65426 -14.44462 -14.42745 -14.01641 -13.95838 -13.58507 -13.44997 -13.23746 -13.01015 -12.74585 -12.63584 -12.50317 -12.39896 -12.16440 -11.96483 -11.85928 -11.82198 -11.50326 -11.33903 -11.06109 -10.65531 -10.22734 -9.95043 -9.64966 -8.83279 -7.81602 -5.16077 -0.54983 -0.14396 0.86872 1.48832 1.49375 1.50371 1.57906 1.85739 2.30126 2.52363 2.96768 3.21432 3.37401 3.43824 3.50978 3.65914 3.78480 3.86871 3.94505 3.98050 4.15480 4.27233 4.32550 4.52919 4.55799 4.57801 4.67749 4.76009 4.84578 4.87955 4.92641 4.95608 5.08286 5.12168 5.23935 5.41345 5.47496 5.53287 5.67241 5.81780 6.24982 6.40595 6.96504 7.15184 7.84756 8.45698 9.28265 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.013778 B = 0.003540 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.670900 B = 7908.747507 C = 8993.471029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.064 4.064 3 Si 0.971 3.029 4 H -0.289 1.289 5 H -0.301 1.301 6 H -0.265 1.265 7 C -0.235 4.235 8 H 0.087 0.913 9 N -0.622 5.622 10 C 0.198 3.802 11 C -0.112 4.112 12 H 0.113 0.887 13 C 0.127 3.873 14 N -0.601 5.601 15 C 0.566 3.434 16 O -0.557 6.557 17 C -0.143 4.143 18 C -0.045 4.045 19 C -0.140 4.140 20 C 0.138 3.862 21 F -0.126 7.126 22 C -0.147 4.147 23 C 0.026 3.974 24 Cl -0.041 7.041 25 C 0.111 3.889 26 C -0.094 4.094 27 H 0.132 0.868 28 C 0.139 3.861 29 H 0.243 0.757 30 H 0.002 0.998 31 H 0.011 0.989 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.151 0.849 35 H 0.174 0.826 36 H 0.173 0.827 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.053 0.947 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.215 -16.428 10.883 20.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.257 4.257 3 Si 0.800 3.200 4 H -0.217 1.217 5 H -0.228 1.228 6 H -0.190 1.190 7 C -0.364 4.364 8 H 0.105 0.895 9 N -0.348 5.348 10 C 0.073 3.927 11 C -0.132 4.132 12 H 0.131 0.869 13 C 0.004 3.996 14 N -0.333 5.333 15 C 0.355 3.645 16 O -0.436 6.436 17 C -0.147 4.147 18 C -0.064 4.064 19 C -0.159 4.159 20 C 0.118 3.882 21 F -0.104 7.104 22 C -0.166 4.166 23 C -0.002 4.002 24 Cl -0.012 7.012 25 C -0.011 4.011 26 C -0.114 4.114 27 H 0.150 0.850 28 C 0.014 3.986 29 H 0.053 0.947 30 H 0.021 0.979 31 H 0.030 0.970 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.168 0.832 35 H 0.192 0.808 36 H 0.190 0.810 37 H 0.083 0.917 38 H 0.118 0.882 39 H 0.071 0.929 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.426 -16.382 11.048 20.054 hybrid contribution -0.099 1.425 -0.104 1.432 sum 3.327 -14.957 10.944 18.830 Atomic orbital electron populations 1.70190 1.06301 1.24956 1.58612 1.25562 0.96394 1.00834 1.02926 0.85180 0.77853 0.79635 0.77302 1.21667 1.22793 1.18952 1.19438 0.91098 0.83494 1.42343 0.89487 1.44498 1.02051 1.01325 1.86971 1.20760 0.84187 0.90080 0.97696 1.23002 0.95318 0.96684 0.98161 0.86853 1.21711 0.94015 0.99313 0.84570 1.48188 1.09103 1.65403 1.10613 1.17987 0.87495 0.77142 0.81862 1.90797 1.15980 1.53386 1.83470 1.19741 0.98006 0.99351 0.97560 1.21401 0.90371 0.97498 0.97116 1.21433 1.02345 0.98016 0.94103 1.17671 0.88801 0.95667 0.86082 1.91564 1.69990 1.93437 1.55413 1.21069 0.93827 1.02905 0.98828 1.20665 0.90601 0.93451 0.95497 1.98419 1.38083 1.68258 1.96441 1.22341 0.80511 1.02375 0.95829 1.23007 0.94380 1.00139 0.93848 0.84976 1.21392 0.94866 0.83843 0.98470 0.94743 0.97926 0.97046 0.90383 0.93570 0.83164 0.80822 0.80957 0.91708 0.88249 0.92897 0.95307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.95 10.25 21.65 0.22 -55.73 16 2 C -0.06 -3.51 5.48 84.86 0.47 -3.05 16 3 Si 0.97 44.30 29.55 68.60 2.03 46.32 16 4 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.23 -12.24 10.25 84.03 0.86 -11.38 16 8 H 0.09 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.62 -28.97 3.37 -697.83 -2.35 -31.32 16 10 C 0.20 9.13 4.75 86.59 0.41 9.54 16 11 C -0.11 -3.68 4.02 -9.49 -0.04 -3.71 16 12 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 13 C 0.13 4.16 6.24 86.59 0.54 4.70 16 14 N -0.60 -18.56 3.31 -820.64 -2.72 -21.28 16 15 C 0.57 18.27 7.13 86.73 0.62 18.89 16 16 O -0.56 -21.42 15.60 -3.94 -0.06 -21.48 16 17 C -0.14 -3.68 5.36 -20.07 -0.11 -3.79 16 18 C -0.05 -0.97 8.33 22.51 0.19 -0.78 16 19 C -0.14 -2.34 10.01 22.28 0.22 -2.12 16 20 C 0.14 2.33 7.31 22.46 0.16 2.49 16 21 F -0.13 -2.10 17.26 44.97 0.78 -1.33 16 22 C -0.15 -2.60 9.79 22.30 0.22 -2.38 16 23 C 0.03 0.60 6.33 22.59 0.14 0.74 16 24 Cl -0.04 -1.03 26.81 -2.72 -0.07 -1.11 16 25 C 0.11 2.94 4.57 86.72 0.40 3.34 16 26 C -0.09 -2.55 4.19 -9.25 -0.04 -2.59 16 27 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 28 C 0.14 4.74 6.37 86.65 0.55 5.29 16 29 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 30 H 0.00 0.13 7.46 -2.39 -0.02 0.12 16 31 H 0.01 0.61 6.50 -2.38 -0.02 0.60 16 32 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.05 1.78 7.44 -2.39 -0.02 1.76 16 34 H 0.15 3.39 5.86 -2.91 -0.02 3.37 16 35 H 0.17 2.05 8.06 -2.91 -0.02 2.02 16 36 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 37 H 0.06 1.96 6.16 -2.39 -0.01 1.94 16 38 H 0.10 2.02 7.63 -2.39 -0.02 2.00 16 39 H 0.05 1.66 7.95 -2.38 -0.02 1.65 16 40 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -68.14 341.42 3.50 -64.64 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: 1.08 Total: 6.08 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 4.60 Total: 15.20 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -4.85 Total: -108.33 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.06 Total: -21.48 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.78 Total: -1.33 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.07 Total: -1.11 kcal Total: -68.14 3.50 -64.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049201915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.002 kcal (2) G-P(sol) polarization free energy of solvation -68.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds