Wall clock time and date at job start Tue Mar 31 2020 20:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86810 * 120.00058 * 2 1 4 4 H 1.48498 * 109.46532 * 5.80598 * 3 2 1 5 5 H 1.48501 * 109.47272 * 125.80525 * 3 2 1 6 6 H 1.48500 * 109.47115 * 245.80770 * 3 2 1 7 7 C 1.38808 * 120.00128 * 179.72266 * 2 1 3 8 8 H 1.07996 * 120.00126 * 335.41745 * 7 2 1 9 9 N 1.36946 * 119.99817 * 155.42029 * 7 2 1 10 10 C 1.47131 * 125.58874 * 355.09875 * 9 7 2 11 11 C 1.54601 * 107.36628 * 180.93298 * 10 9 7 12 12 C 1.53654 * 102.73025 * 20.75433 * 11 10 9 13 13 C 1.52375 * 116.39799 * 197.08072 * 12 11 10 14 14 N 1.47890 * 85.59103 * 218.64832 * 13 12 11 15 15 C 1.34774 * 134.34261 * 203.48616 * 14 13 12 16 16 O 1.21564 * 120.00030 * 184.78711 * 15 14 13 17 17 C 1.47697 * 120.00180 * 4.78590 * 15 14 13 18 18 C 1.39673 * 120.15757 * 335.02197 * 17 15 14 19 19 C 1.37856 * 119.90359 * 179.97438 * 18 17 15 20 20 C 1.38452 * 120.22716 * 359.97291 * 19 18 17 21 21 C 1.38302 * 120.32694 * 0.02922 * 20 19 18 22 22 Cl 1.73602 * 119.95241 * 180.02562 * 21 20 19 23 23 C 1.38436 * 120.09332 * 359.74000 * 21 20 19 24 24 F 1.35101 * 120.11571 * 180.28563 * 23 21 20 25 25 C 1.47897 * 91.31402 * 23.48589 * 14 13 12 26 26 C 1.47726 * 125.58329 * 174.79734 * 9 7 2 27 27 H 0.97000 * 120.00244 * 174.99832 * 1 2 3 28 28 H 1.08998 * 109.86626 * 300.37625 * 10 9 7 29 29 H 1.09004 * 109.86571 * 61.34958 * 10 9 7 30 30 H 1.09001 * 110.76121 * 139.06271 * 11 10 9 31 31 H 1.09003 * 110.75746 * 262.44569 * 11 10 9 32 32 H 1.08998 * 113.85147 * 332.81988 * 13 12 11 33 33 H 1.09000 * 113.85124 * 104.48315 * 13 12 11 34 34 H 1.07999 * 120.05495 * 359.95372 * 18 17 15 35 35 H 1.07992 * 119.88745 * 180.02562 * 19 18 17 36 36 H 1.08000 * 119.83641 * 180.02562 * 20 19 18 37 37 H 1.08994 * 113.84970 * 222.34550 * 25 14 13 38 38 H 1.09001 * 113.96718 * 90.69536 * 25 14 13 39 39 H 1.08999 * 110.39963 * 276.32888 * 26 9 7 40 40 H 1.09000 * 110.39996 * 38.74255 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2913 2.7428 0.1416 5 1 3.2070 1.6370 1.1355 6 1 2.9945 1.7596 -1.2771 7 6 2.0102 -1.2021 0.0058 8 1 1.5436 -2.0931 0.3992 9 7 3.2866 -1.2581 -0.4872 10 6 4.0009 -0.1510 -1.1420 11 6 5.3947 -0.6796 -1.5520 12 6 5.1864 -2.2018 -1.5745 13 6 6.4463 -3.0584 -1.5487 14 7 5.7310 -3.9367 -2.4996 15 6 5.8325 -5.2367 -2.8402 16 8 5.1494 -5.6843 -3.7407 17 6 6.7736 -6.1178 -2.1194 18 6 7.8943 -5.5776 -1.4846 19 6 8.7690 -6.4047 -0.8128 20 6 8.5402 -7.7693 -0.7647 21 6 7.4335 -8.3143 -1.3900 22 17 7.1556 -10.0266 -1.3230 23 6 6.5438 -7.4956 -2.0643 24 9 5.4595 -8.0268 -2.6704 25 6 4.8602 -2.8207 -2.9281 26 6 4.1740 -2.4383 -0.4433 27 1 -0.4850 -0.8368 -0.0732 28 1 3.4524 0.1720 -2.0267 29 1 4.1081 0.6826 -0.4478 30 1 5.6716 -0.3129 -2.5404 31 1 6.1458 -0.4033 -0.8118 32 1 7.3216 -2.5679 -1.9745 33 1 6.6437 -3.5230 -0.5826 34 1 8.0756 -4.5135 -1.5201 35 1 9.6352 -5.9867 -0.3217 36 1 9.2293 -8.4114 -0.2363 37 1 3.8128 -3.0988 -3.0447 38 1 5.2485 -2.2564 -3.7760 39 1 4.6822 -2.4959 0.5192 40 1 3.6044 -3.3491 -0.6283 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072938507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:03 Heat of formation + Delta-G solvation = 26.141949 kcal Electronic energy + Delta-G solvation = -26786.031762 eV Core-core repulsion = 22737.097252 eV Total energy + Delta-G solvation = -4048.934510 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.19201 -41.00764 -39.52832 -38.18287 -36.90982 -36.03070 -32.60562 -31.88600 -30.94798 -30.01793 -28.80732 -26.62783 -26.35431 -24.28298 -23.20721 -22.97232 -20.88303 -20.13636 -18.80371 -17.97808 -17.67811 -17.23816 -17.11135 -16.33352 -15.94076 -15.71141 -15.50864 -15.17465 -14.98680 -14.78585 -13.86672 -13.69263 -13.60529 -13.40576 -13.34589 -13.03835 -12.88085 -12.77676 -12.20548 -12.11937 -11.97924 -11.88463 -11.56677 -11.47055 -11.27472 -10.97033 -10.70021 -10.52584 -10.06977 -9.94873 -9.53491 -9.52230 -9.19145 -9.01219 -8.77124 -8.53456 -7.12514 -6.35106 -3.20228 0.20452 0.48260 1.51470 2.43726 2.57396 3.16041 3.39804 3.49938 3.58673 3.70365 3.94162 4.21035 4.31997 4.35585 4.57122 4.62672 4.67026 4.77227 4.88705 5.16790 5.19598 5.22270 5.23608 5.29892 5.33415 5.42959 5.49966 5.62529 5.65512 5.70559 5.79359 5.89730 6.01187 6.10487 6.14694 6.32734 6.43376 6.55251 6.71896 7.53012 7.63002 7.96669 8.31789 9.01462 9.54492 10.19759 11.14627 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.020999 B = 0.002748 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.067967 B =10186.629355 C =10545.763098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.017 4.017 3 Si 1.053 2.947 4 H -0.301 1.301 5 H -0.298 1.298 6 H -0.281 1.281 7 C -0.329 4.329 8 H 0.078 0.922 9 N -0.610 5.610 10 C 0.119 3.881 11 C -0.116 4.116 12 C -0.106 4.106 13 C 0.107 3.893 14 N -0.633 5.633 15 C 0.578 3.422 16 O -0.524 6.524 17 C -0.149 4.149 18 C -0.059 4.059 19 C -0.125 4.125 20 C -0.061 4.061 21 C -0.086 4.086 22 Cl -0.043 7.043 23 C 0.165 3.835 24 F -0.104 7.104 25 C 0.132 3.868 26 C 0.162 3.838 27 H 0.263 0.737 28 H 0.046 0.954 29 H 0.027 0.973 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.029 0.971 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.827 -12.255 -2.180 26.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.217 4.217 3 Si 0.886 3.114 4 H -0.229 1.229 5 H -0.226 1.226 6 H -0.208 1.208 7 C -0.456 4.456 8 H 0.096 0.904 9 N -0.337 5.337 10 C -0.006 4.006 11 C -0.154 4.154 12 C -0.108 4.108 13 C -0.016 4.016 14 N -0.368 5.368 15 C 0.367 3.633 16 O -0.401 6.401 17 C -0.153 4.153 18 C -0.077 4.077 19 C -0.144 4.144 20 C -0.080 4.080 21 C -0.113 4.113 22 Cl -0.014 7.014 23 C 0.144 3.856 24 F -0.082 7.082 25 C 0.011 3.989 26 C 0.036 3.964 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.047 0.953 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 23.063 -11.253 -2.643 25.798 hybrid contribution 0.081 -1.971 -0.002 1.972 sum 23.144 -13.224 -2.645 26.786 Atomic orbital electron populations 1.70893 1.06056 1.29300 1.49599 1.25742 0.96181 1.00793 0.99009 0.84142 0.73975 0.76738 0.76542 1.22879 1.22585 1.20848 1.20086 0.86914 0.97815 1.40794 0.90379 1.44937 1.12921 1.07158 1.68713 1.21971 0.90814 0.91608 0.96206 1.22389 0.98479 0.92910 1.01636 1.22561 0.95649 0.95560 0.97022 1.23261 0.96304 0.88646 0.93363 1.50010 1.37891 1.06746 1.42177 1.17482 0.82351 0.80766 0.82730 1.90857 1.45052 1.74153 1.30014 1.20010 0.99185 0.91731 1.04396 1.21620 0.91811 1.01301 0.93009 1.21157 1.00474 0.92425 1.00296 1.21182 0.94687 0.95868 0.96264 1.20919 0.98593 0.86532 1.05292 1.98404 1.96110 1.09556 1.97351 1.17369 0.84652 0.89888 0.93692 1.91640 1.50747 1.85944 1.79833 1.23019 0.96563 0.82966 0.96333 1.21110 0.90214 0.91975 0.93125 0.92689 0.93653 0.95524 0.90751 0.90660 0.88853 0.89344 0.83435 0.83531 0.83432 0.89105 0.89369 0.95296 0.93507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.67 13.70 55.49 0.76 -27.91 16 2 C -0.02 -0.49 5.46 -17.44 -0.10 -0.59 16 3 Si 1.05 25.74 24.78 -169.99 -4.21 21.52 16 4 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 5 H -0.30 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.15 5.22 56.52 0.30 -5.85 16 7 C -0.33 -9.27 10.48 -15.06 -0.16 -9.43 16 8 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 9 N -0.61 -14.23 3.35 -170.36 -0.57 -14.80 16 10 C 0.12 2.38 4.60 -2.86 -0.01 2.37 16 11 C -0.12 -1.59 6.36 -25.55 -0.16 -1.76 16 12 C -0.11 -1.47 0.99 -154.72 -0.15 -1.63 16 13 C 0.11 1.06 5.64 -3.60 -0.02 1.04 16 14 N -0.63 -8.48 3.61 -188.05 -0.68 -9.16 16 15 C 0.58 8.86 7.78 -12.40 -0.10 8.76 16 16 O -0.52 -10.20 16.47 5.31 0.09 -10.11 16 17 C -0.15 -1.82 5.84 -104.92 -0.61 -2.43 16 18 C -0.06 -0.48 8.71 -39.19 -0.34 -0.82 16 19 C -0.13 -0.75 10.03 -39.64 -0.40 -1.14 16 20 C -0.06 -0.42 9.82 -39.48 -0.39 -0.81 16 21 C -0.09 -0.86 6.32 -39.48 -0.25 -1.11 16 22 Cl -0.04 -0.42 28.61 -51.86 -1.48 -1.91 16 23 C 0.17 2.13 7.22 -38.93 -0.28 1.84 16 24 F -0.10 -1.62 15.44 2.25 0.03 -1.59 16 25 C 0.13 1.89 8.16 -3.60 -0.03 1.86 16 26 C 0.16 3.01 6.65 -3.04 -0.02 2.99 16 27 H 0.26 8.17 8.73 -40.82 -0.36 7.81 16 28 H 0.05 0.97 6.95 -51.93 -0.36 0.61 16 29 H 0.03 0.57 4.22 -51.93 -0.22 0.35 16 30 H 0.07 0.85 7.99 -51.93 -0.41 0.43 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.63 8.03 -51.93 -0.42 0.22 16 33 H 0.09 0.76 7.22 -51.93 -0.37 0.38 16 34 H 0.15 0.89 5.23 -52.49 -0.27 0.62 16 35 H 0.15 0.40 8.06 -52.49 -0.42 -0.03 16 36 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.09 1.55 8.13 -51.93 -0.42 1.13 16 38 H 0.09 1.07 8.04 -51.93 -0.42 0.65 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 LS Contribution 342.52 15.07 5.16 5.16 Total: -1.00 -35.31 342.52 -8.61 -43.92 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: -4.69 Total: -4.29 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -3.02 Total: -0.84 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.49 Total: -51.87 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.03 Total: -1.59 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -4.21 Total: 21.52 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.48 Total: -1.91 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.31 -8.61 -43.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072938507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.064 kcal (2) G-P(sol) polarization free energy of solvation -35.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds