Wall clock time and date at job start Tue Mar 31 2020 20:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86810 * 120.00058 * 2 1 4 4 H 1.48498 * 109.46532 * 5.80598 * 3 2 1 5 5 H 1.48501 * 109.47272 * 125.80525 * 3 2 1 6 6 H 1.48500 * 109.47115 * 245.80770 * 3 2 1 7 7 C 1.38808 * 120.00128 * 179.72266 * 2 1 3 8 8 H 1.07996 * 120.00126 * 335.41745 * 7 2 1 9 9 N 1.36946 * 119.99817 * 155.42029 * 7 2 1 10 10 C 1.47131 * 125.58874 * 355.09875 * 9 7 2 11 11 C 1.54601 * 107.36628 * 180.93298 * 10 9 7 12 12 C 1.53654 * 102.73025 * 20.75433 * 11 10 9 13 13 C 1.52375 * 116.39799 * 197.08072 * 12 11 10 14 14 N 1.47890 * 85.59103 * 218.64832 * 13 12 11 15 15 C 1.34774 * 134.34261 * 203.48616 * 14 13 12 16 16 O 1.21564 * 120.00030 * 184.78711 * 15 14 13 17 17 C 1.47697 * 120.00180 * 4.78590 * 15 14 13 18 18 C 1.39673 * 120.15757 * 335.02197 * 17 15 14 19 19 C 1.37856 * 119.90359 * 179.97438 * 18 17 15 20 20 C 1.38452 * 120.22716 * 359.97291 * 19 18 17 21 21 C 1.38302 * 120.32694 * 0.02922 * 20 19 18 22 22 Cl 1.73602 * 119.95241 * 180.02562 * 21 20 19 23 23 C 1.38436 * 120.09332 * 359.74000 * 21 20 19 24 24 F 1.35101 * 120.11571 * 180.28563 * 23 21 20 25 25 C 1.47897 * 91.31402 * 23.48589 * 14 13 12 26 26 C 1.47726 * 125.58329 * 174.79734 * 9 7 2 27 27 H 0.97000 * 120.00244 * 174.99832 * 1 2 3 28 28 H 1.08998 * 109.86626 * 300.37625 * 10 9 7 29 29 H 1.09004 * 109.86571 * 61.34958 * 10 9 7 30 30 H 1.09001 * 110.76121 * 139.06271 * 11 10 9 31 31 H 1.09003 * 110.75746 * 262.44569 * 11 10 9 32 32 H 1.08998 * 113.85147 * 332.81988 * 13 12 11 33 33 H 1.09000 * 113.85124 * 104.48315 * 13 12 11 34 34 H 1.07999 * 120.05495 * 359.95372 * 18 17 15 35 35 H 1.07992 * 119.88745 * 180.02562 * 19 18 17 36 36 H 1.08000 * 119.83641 * 180.02562 * 20 19 18 37 37 H 1.08994 * 113.84970 * 222.34550 * 25 14 13 38 38 H 1.09001 * 113.96718 * 90.69536 * 25 14 13 39 39 H 1.08999 * 110.39963 * 276.32888 * 26 9 7 40 40 H 1.09000 * 110.39996 * 38.74255 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2913 2.7428 0.1416 5 1 3.2070 1.6370 1.1355 6 1 2.9945 1.7596 -1.2771 7 6 2.0102 -1.2021 0.0058 8 1 1.5436 -2.0931 0.3992 9 7 3.2866 -1.2581 -0.4872 10 6 4.0009 -0.1510 -1.1420 11 6 5.3947 -0.6796 -1.5520 12 6 5.1864 -2.2018 -1.5745 13 6 6.4463 -3.0584 -1.5487 14 7 5.7310 -3.9367 -2.4996 15 6 5.8325 -5.2367 -2.8402 16 8 5.1494 -5.6843 -3.7407 17 6 6.7736 -6.1178 -2.1194 18 6 7.8943 -5.5776 -1.4846 19 6 8.7690 -6.4047 -0.8128 20 6 8.5402 -7.7693 -0.7647 21 6 7.4335 -8.3143 -1.3900 22 17 7.1556 -10.0266 -1.3230 23 6 6.5438 -7.4956 -2.0643 24 9 5.4595 -8.0268 -2.6704 25 6 4.8602 -2.8207 -2.9281 26 6 4.1740 -2.4383 -0.4433 27 1 -0.4850 -0.8368 -0.0732 28 1 3.4524 0.1720 -2.0267 29 1 4.1081 0.6826 -0.4478 30 1 5.6716 -0.3129 -2.5404 31 1 6.1458 -0.4033 -0.8118 32 1 7.3216 -2.5679 -1.9745 33 1 6.6437 -3.5230 -0.5826 34 1 8.0756 -4.5135 -1.5201 35 1 9.6352 -5.9867 -0.3217 36 1 9.2293 -8.4114 -0.2363 37 1 3.8128 -3.0988 -3.0447 38 1 5.2485 -2.2564 -3.7760 39 1 4.6822 -2.4959 0.5192 40 1 3.6044 -3.3491 -0.6283 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072938507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:02 Heat of formation + Delta-G solvation = 0.702308 kcal Electronic energy + Delta-G solvation = -26787.134907 eV Core-core repulsion = 22737.097252 eV Total energy + Delta-G solvation = -4050.037655 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.17172 -42.07604 -40.39782 -39.25922 -37.64392 -37.52994 -34.49150 -32.87723 -31.62509 -31.48945 -30.13014 -27.92558 -27.47810 -25.45591 -24.42229 -23.73801 -22.65398 -21.12963 -20.04232 -19.38840 -18.85720 -18.37117 -17.98750 -17.33566 -17.07447 -16.74797 -16.69132 -16.51675 -16.06753 -15.63853 -15.50527 -15.01124 -14.88951 -14.49228 -14.35939 -14.15752 -14.12588 -13.64986 -13.37394 -13.31035 -13.04847 -13.02854 -12.76911 -12.63726 -12.44641 -12.20787 -12.10750 -11.92702 -11.61600 -11.34712 -11.17131 -10.84847 -10.50507 -10.26516 -9.91885 -9.79075 -9.12576 -8.68268 -5.42499 -0.51173 -0.19436 0.80110 1.44281 1.52686 1.55528 1.60618 1.77132 2.39012 2.60459 2.84948 2.99055 3.06841 3.25230 3.46775 3.51848 3.66646 3.74837 3.92260 3.97193 4.07974 4.15666 4.34511 4.43626 4.48453 4.59033 4.65830 4.69661 4.71000 4.77454 4.80537 4.88300 4.96761 5.00194 5.04584 5.07793 5.19715 5.33439 5.52202 5.55029 6.08732 6.50946 6.83146 6.87677 7.47177 8.10406 8.83445 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.020999 B = 0.002748 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.067967 B =10186.629355 C =10545.763098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.080 4.080 3 Si 1.100 2.900 4 H -0.317 1.317 5 H -0.278 1.278 6 H -0.236 1.236 7 C -0.321 4.321 8 H 0.034 0.966 9 N -0.633 5.633 10 C 0.102 3.898 11 C -0.096 4.096 12 C -0.099 4.099 13 C 0.124 3.876 14 N -0.635 5.635 15 C 0.568 3.432 16 O -0.587 6.587 17 C -0.171 4.171 18 C -0.048 4.048 19 C -0.101 4.101 20 C -0.049 4.049 21 C -0.094 4.094 22 Cl -0.051 7.051 23 C 0.122 3.878 24 F -0.137 7.137 25 C 0.122 3.878 26 C 0.157 3.843 27 H 0.244 0.756 28 H 0.027 0.973 29 H 0.028 0.972 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.151 0.849 33 H 0.111 0.889 34 H 0.178 0.822 35 H 0.198 0.802 36 H 0.182 0.818 37 H 0.042 0.958 38 H 0.120 0.880 39 H 0.047 0.953 40 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.601 -10.373 -1.283 32.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.273 4.273 3 Si 0.926 3.074 4 H -0.246 1.246 5 H -0.205 1.205 6 H -0.161 1.161 7 C -0.450 4.450 8 H 0.052 0.948 9 N -0.360 5.360 10 C -0.022 4.022 11 C -0.134 4.134 12 C -0.100 4.100 13 C 0.004 3.996 14 N -0.368 5.368 15 C 0.359 3.641 16 O -0.469 6.469 17 C -0.175 4.175 18 C -0.067 4.067 19 C -0.118 4.118 20 C -0.068 4.068 21 C -0.122 4.122 22 Cl -0.022 7.022 23 C 0.101 3.899 24 F -0.115 7.115 25 C 0.001 3.999 26 C 0.032 3.968 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.169 0.831 33 H 0.129 0.871 34 H 0.195 0.805 35 H 0.216 0.784 36 H 0.199 0.801 37 H 0.060 0.940 38 H 0.138 0.862 39 H 0.065 0.935 40 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 29.917 -9.385 -1.731 31.402 hybrid contribution -2.046 -2.689 -0.206 3.385 sum 27.871 -12.074 -1.937 30.435 Atomic orbital electron populations 1.71019 1.07570 1.28197 1.53416 1.27240 0.96129 1.04832 0.99066 0.83621 0.73166 0.71406 0.79213 1.24633 1.20516 1.16054 1.19929 0.89497 0.96143 1.39388 0.94788 1.44979 1.12225 1.10153 1.68690 1.22220 0.94132 0.90915 0.94960 1.22420 0.94976 0.91246 1.04710 1.22352 0.96480 0.96966 0.94251 1.23624 0.95539 0.86304 0.94123 1.50118 1.37932 1.06356 1.42390 1.18093 0.82247 0.81465 0.82287 1.90809 1.47787 1.75351 1.32959 1.19939 1.00507 0.90861 1.06203 1.21997 0.90040 1.03045 0.91576 1.21745 1.00643 0.91390 0.98051 1.21716 0.93343 0.97145 0.94551 1.21136 0.99249 0.86046 1.05756 1.98397 1.96297 1.10151 1.97389 1.17886 0.85140 0.91062 0.95824 1.91544 1.52614 1.86459 1.80905 1.23112 0.94653 0.84025 0.98151 1.21258 0.90543 0.88889 0.96148 0.94687 0.95523 0.95426 0.87075 0.86835 0.83142 0.87090 0.80458 0.78449 0.80094 0.93976 0.86230 0.93527 0.97217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.22 13.70 21.65 0.30 -62.92 16 2 C -0.08 -4.81 5.46 84.86 0.46 -4.35 16 3 Si 1.10 51.79 24.78 68.60 1.70 53.49 16 4 H -0.32 -15.68 7.11 99.48 0.71 -14.97 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.24 -9.38 5.22 99.48 0.52 -8.86 16 7 C -0.32 -18.98 10.48 84.03 0.88 -18.10 16 8 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 9 N -0.63 -29.60 3.35 -692.88 -2.32 -31.92 16 10 C 0.10 3.77 4.60 86.80 0.40 4.17 16 11 C -0.10 -2.05 6.36 31.36 0.20 -1.85 16 12 C -0.10 -2.38 0.99 -52.07 -0.05 -2.43 16 13 C 0.12 1.71 5.64 85.91 0.48 2.20 16 14 N -0.63 -15.76 3.61 -867.15 -3.13 -18.90 16 15 C 0.57 17.60 7.78 86.74 0.68 18.28 16 16 O -0.59 -24.61 16.47 -3.92 -0.06 -24.68 16 17 C -0.17 -3.97 5.84 -20.06 -0.12 -4.09 16 18 C -0.05 -0.54 8.71 22.53 0.20 -0.34 16 19 C -0.10 -0.55 10.03 22.23 0.22 -0.33 16 20 C -0.05 -0.46 9.82 22.34 0.22 -0.24 16 21 C -0.09 -1.77 6.32 22.33 0.14 -1.63 16 22 Cl -0.05 -0.99 28.61 -2.72 -0.08 -1.07 16 23 C 0.12 3.21 7.22 22.69 0.16 3.37 16 24 F -0.14 -4.73 15.44 44.97 0.69 -4.04 16 25 C 0.12 3.35 8.16 85.90 0.70 4.05 16 26 C 0.16 5.73 6.65 86.36 0.57 6.31 16 27 H 0.24 16.39 8.73 -92.71 -0.81 15.58 16 28 H 0.03 1.08 6.95 -2.39 -0.02 1.06 16 29 H 0.03 1.06 4.22 -2.39 -0.01 1.05 16 30 H 0.11 1.69 7.99 -2.39 -0.02 1.67 16 31 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.15 0.59 8.03 -2.39 -0.02 0.57 16 33 H 0.11 1.13 7.22 -2.39 -0.02 1.11 16 34 H 0.18 0.80 5.23 -2.91 -0.02 0.78 16 35 H 0.20 -0.77 8.06 -2.91 -0.02 -0.79 16 36 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16 37 H 0.04 1.54 8.13 -2.39 -0.02 1.52 16 38 H 0.12 2.52 8.04 -2.39 -0.02 2.50 16 39 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.01 0.41 8.08 -2.39 -0.02 0.39 16 Total: -1.00 -92.02 342.52 3.11 -88.92 By element: Atomic # 1 Polarization: -4.76 SS G_CDS: 0.86 Total: -3.90 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 5.15 Total: 5.01 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -5.16 Total: -113.74 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.06 Total: -24.68 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.69 Total: -4.04 kcal Atomic # 14 Polarization: 51.79 SS G_CDS: 1.70 Total: 53.49 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -92.02 3.11 -88.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072938507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.620 kcal (2) G-P(sol) polarization free energy of solvation -92.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds