Wall clock time and date at job start Tue Mar 31 2020 20:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99787 * 2 1 4 4 H 1.48507 * 109.47122 * 239.99241 * 3 2 1 5 5 H 1.48501 * 109.47375 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47264 * 119.99480 * 3 2 1 7 7 C 1.38813 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99915 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00235 * 0.02562 * 7 2 1 10 10 C 1.47148 * 125.57851 * 0.02562 * 9 7 2 11 11 C 1.54626 * 107.37716 * 179.06831 * 10 9 7 12 12 C 1.53512 * 102.70202 * 339.38401 * 11 10 9 13 13 C 1.51786 * 116.99839 * 164.16557 * 12 11 10 14 14 N 1.47392 * 87.59670 * 92.96256 * 13 12 11 15 15 C 1.34781 * 135.85450 * 205.59320 * 14 13 12 16 16 O 1.21557 * 119.99638 * 356.95434 * 15 14 13 17 17 C 1.47852 * 120.00117 * 176.94990 * 15 14 13 18 18 C 1.39574 * 120.12496 * 7.74747 * 17 15 14 19 19 C 1.38176 * 119.85114 * 179.97438 * 18 17 15 20 20 F 1.35101 * 119.94689 * 179.97438 * 19 18 17 21 21 C 1.38569 * 120.10496 * 0.02562 * 19 18 17 22 22 C 1.38409 * 120.26021 * 359.97438 * 21 19 18 23 23 Cl 1.73599 * 119.92803 * 179.97438 * 22 21 19 24 24 C 1.38110 * 120.14261 * 359.72086 * 22 21 19 25 25 C 1.47390 * 88.29516 * 25.62821 * 14 13 12 26 26 C 1.47749 * 125.58122 * 179.97438 * 9 7 2 27 27 H 0.97001 * 120.00301 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.86333 * 59.61427 * 10 9 7 29 29 H 1.09003 * 109.86077 * 298.51655 * 10 9 7 30 30 H 1.09004 * 110.75809 * 221.08416 * 11 10 9 31 31 H 1.08991 * 110.76895 * 97.68928 * 11 10 9 32 32 H 1.08995 * 113.54279 * 338.27020 * 13 12 11 33 33 H 1.08998 * 113.54265 * 207.65791 * 13 12 11 34 34 H 1.08002 * 120.07424 * 0.03003 * 18 17 15 35 35 H 1.08008 * 119.87140 * 179.97438 * 21 19 18 36 36 H 1.08001 * 120.05729 * 180.30106 * 24 22 21 37 37 H 1.09004 * 113.54120 * 88.99489 * 25 14 13 38 38 H 1.08997 * 113.54824 * 219.60656 * 25 14 13 39 39 H 1.08999 * 110.40869 * 83.52241 * 26 9 7 40 40 H 1.09004 * 110.40762 * 321.09664 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 -0.1388 -2.5312 -0.0005 11 6 -0.4549 -4.0446 -0.0241 12 6 0.8477 -4.6532 -0.5621 13 6 1.0384 -6.1475 -0.3763 14 7 0.4487 -6.3265 -1.7152 15 6 -0.2150 -7.3089 -2.3562 16 8 -0.3952 -8.3787 -1.8079 17 6 -0.7240 -7.0853 -3.7263 18 6 -0.3822 -5.9231 -4.4195 19 6 -0.8606 -5.7202 -5.6998 20 9 -0.5315 -4.5957 -6.3725 21 6 -1.6783 -6.6677 -6.2946 22 6 -2.0200 -7.8218 -5.6112 23 17 -3.0455 -9.0028 -6.3643 24 6 -1.5427 -8.0382 -4.3335 25 6 0.9014 -4.9639 -2.0484 26 6 1.9366 -3.7334 0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5572 -2.0515 -0.8854 29 1 -0.5557 -2.0797 0.8998 30 1 -1.2865 -4.2552 -0.6967 31 1 -0.6665 -4.4110 0.9804 32 1 0.4319 -6.5673 0.4262 33 1 2.0842 -6.4490 -0.3173 34 1 0.2554 -5.1845 -3.9566 35 1 -2.0505 -6.5050 -7.2954 36 1 -1.8062 -8.9415 -3.8033 37 1 1.9088 -4.9291 -2.4632 38 1 0.1814 -4.3983 -2.6397 39 1 2.1987 -4.0318 1.0156 40 1 2.8176 -3.7507 -0.6410 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073009761.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:50 Heat of formation + Delta-G solvation = 21.148803 kcal Electronic energy + Delta-G solvation = -26592.800031 eV Core-core repulsion = 22543.649003 eV Total energy + Delta-G solvation = -4049.151029 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.25038 -41.08731 -39.53862 -38.06074 -36.81669 -35.80346 -32.49712 -31.74847 -30.87075 -29.54976 -28.76184 -26.36007 -26.09334 -24.38476 -23.44280 -22.91680 -20.41995 -20.08581 -18.71492 -17.94146 -17.35901 -16.91522 -16.54130 -16.20003 -16.04639 -15.79485 -15.61442 -15.01866 -14.78757 -14.41313 -14.06107 -13.87763 -13.72080 -13.42390 -13.16777 -12.63639 -12.50993 -12.35455 -12.11339 -11.96109 -11.89977 -11.68825 -11.48636 -11.04380 -10.96506 -10.71833 -10.56156 -10.33459 -10.19114 -9.98152 -9.78394 -9.68869 -9.47863 -9.16078 -8.73130 -8.65218 -6.90635 -5.76780 -3.10929 0.22715 0.57684 1.54389 2.41576 2.65828 3.30054 3.37252 3.41982 3.43168 3.73138 4.04019 4.35451 4.42824 4.50809 4.55035 4.61640 4.76657 4.85642 5.10896 5.23294 5.38026 5.43119 5.43849 5.49780 5.54993 5.58098 5.62558 5.68370 5.72356 5.81805 6.04027 6.14370 6.21566 6.37676 6.42307 6.56557 6.62033 7.49045 7.54118 7.59288 7.76212 7.96265 8.18735 9.15569 9.75628 10.40462 11.34635 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.002869 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.768895 B = 9757.205738 C =10890.634768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.118 4.118 12 C -0.104 4.104 13 C 0.122 3.878 14 N -0.635 5.635 15 C 0.586 3.414 16 O -0.537 6.537 17 C -0.082 4.082 18 C -0.130 4.130 19 C 0.111 3.889 20 F -0.125 7.125 21 C -0.126 4.126 22 C -0.017 4.017 23 Cl -0.050 7.050 24 C -0.065 4.065 25 C 0.106 3.894 26 C 0.154 3.846 27 H 0.253 0.747 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.163 0.837 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.028 0.972 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.798 -15.266 -10.787 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.156 4.156 12 C -0.106 4.106 13 C 0.000 4.000 14 N -0.368 5.368 15 C 0.376 3.624 16 O -0.415 6.415 17 C -0.086 4.086 18 C -0.149 4.149 19 C 0.092 3.908 20 F -0.103 7.103 21 C -0.146 4.146 22 C -0.044 4.044 23 Cl -0.021 7.021 24 C -0.084 4.084 25 C -0.015 4.015 26 C 0.027 3.973 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.180 0.820 35 H 0.169 0.831 36 H 0.171 0.829 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.046 0.954 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.149 -15.821 -10.690 19.352 hybrid contribution 0.385 1.077 -0.349 1.196 sum -2.764 -14.744 -11.039 18.625 Atomic orbital electron populations 1.69940 1.04885 1.25249 1.56779 1.24797 0.95706 0.97686 1.02090 0.86208 0.78464 0.83193 0.77908 1.21148 1.21624 1.21167 1.18986 0.90401 0.82282 1.44208 0.90422 1.44525 1.01543 0.99637 1.87384 1.21236 0.84286 0.87745 1.01306 1.22497 0.94033 0.99299 0.99819 1.22174 1.00347 0.93494 0.94590 1.22836 0.98661 0.94226 0.84254 1.49654 1.54163 1.15759 1.17252 1.17429 0.78278 0.82340 0.84327 1.90792 1.59078 1.24181 1.67450 1.19633 0.99675 0.94581 0.94689 1.22197 1.00861 0.98502 0.93371 1.17281 0.98403 0.84232 0.90916 1.91584 1.90802 1.48369 1.79591 1.21174 0.98941 0.92690 1.01790 1.20424 0.97877 0.92137 0.93995 1.98399 1.65848 1.56376 1.81516 1.21187 0.94873 0.99735 0.92648 1.23171 1.00311 0.79822 0.98232 1.21131 0.93074 0.85704 0.97388 0.93645 0.93472 0.93703 0.92063 0.91602 0.90031 0.89334 0.81979 0.83137 0.82861 0.88759 0.89312 0.95391 0.93841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.96 10.30 55.49 0.57 -25.39 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.29 29.55 -169.99 -5.02 16.27 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.23 -6.03 10.28 -15.06 -0.15 -6.19 16 8 H 0.08 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.60 -14.11 3.41 -170.55 -0.58 -14.70 16 10 C 0.18 4.01 5.39 -2.83 -0.02 3.99 16 11 C -0.12 -2.00 6.40 -25.61 -0.16 -2.17 16 12 C -0.10 -1.56 1.06 -155.29 -0.16 -1.72 16 13 C 0.12 1.58 8.03 -7.47 -0.06 1.52 16 14 N -0.63 -8.54 3.70 -186.53 -0.69 -9.23 16 15 C 0.59 8.43 8.00 -12.32 -0.10 8.33 16 16 O -0.54 -9.16 17.14 5.32 0.09 -9.07 16 17 C -0.08 -1.00 5.87 -104.98 -0.62 -1.62 16 18 C -0.13 -1.47 9.16 -39.11 -0.36 -1.83 16 19 C 0.11 1.19 7.29 -39.48 -0.29 0.91 16 20 F -0.13 -1.45 17.26 2.25 0.04 -1.41 16 21 C -0.13 -1.18 9.80 -39.40 -0.39 -1.56 16 22 C -0.02 -0.17 6.31 -39.57 -0.25 -0.42 16 23 Cl -0.05 -0.44 28.95 -51.86 -1.50 -1.94 16 24 C -0.06 -0.71 9.37 -39.14 -0.37 -1.08 16 25 C 0.11 1.39 5.79 -7.39 -0.04 1.35 16 26 C 0.15 2.75 6.71 -3.23 -0.02 2.73 16 27 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.05 1.18 7.39 -51.93 -0.38 0.79 16 29 H 0.04 1.14 7.49 -51.93 -0.39 0.75 16 30 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.05 8.13 -51.93 -0.42 0.63 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.16 1.80 3.86 -52.49 -0.20 1.59 16 35 H 0.15 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.15 1.65 7.67 -52.49 -0.40 1.25 16 37 H 0.09 1.09 8.07 -51.93 -0.42 0.67 16 38 H 0.09 1.18 6.22 -51.93 -0.32 0.85 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.04 0.74 8.01 -51.93 -0.42 0.32 16 LS Contribution 350.10 15.07 5.28 5.28 Total: -1.00 -29.94 350.10 -9.51 -39.45 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -4.61 Total: -1.24 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -3.08 Total: 1.97 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -0.70 Total: -49.31 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.50 Total: -1.94 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.94 -9.51 -39.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073009761.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.601 kcal (2) G-P(sol) polarization free energy of solvation -29.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds