Wall clock time and date at job start Tue Mar 31 2020 20:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99787 * 2 1 4 4 H 1.48507 * 109.47122 * 239.99241 * 3 2 1 5 5 H 1.48501 * 109.47375 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47264 * 119.99480 * 3 2 1 7 7 C 1.38813 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99915 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00235 * 0.02562 * 7 2 1 10 10 C 1.47148 * 125.57851 * 0.02562 * 9 7 2 11 11 C 1.54626 * 107.37716 * 179.06831 * 10 9 7 12 12 C 1.53512 * 102.70202 * 339.38401 * 11 10 9 13 13 C 1.51786 * 116.99839 * 164.16557 * 12 11 10 14 14 N 1.47392 * 87.59670 * 92.96256 * 13 12 11 15 15 C 1.34781 * 135.85450 * 205.59320 * 14 13 12 16 16 O 1.21557 * 119.99638 * 356.95434 * 15 14 13 17 17 C 1.47852 * 120.00117 * 176.94990 * 15 14 13 18 18 C 1.39574 * 120.12496 * 7.74747 * 17 15 14 19 19 C 1.38176 * 119.85114 * 179.97438 * 18 17 15 20 20 F 1.35101 * 119.94689 * 179.97438 * 19 18 17 21 21 C 1.38569 * 120.10496 * 0.02562 * 19 18 17 22 22 C 1.38409 * 120.26021 * 359.97438 * 21 19 18 23 23 Cl 1.73599 * 119.92803 * 179.97438 * 22 21 19 24 24 C 1.38110 * 120.14261 * 359.72086 * 22 21 19 25 25 C 1.47390 * 88.29516 * 25.62821 * 14 13 12 26 26 C 1.47749 * 125.58122 * 179.97438 * 9 7 2 27 27 H 0.97001 * 120.00301 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.86333 * 59.61427 * 10 9 7 29 29 H 1.09003 * 109.86077 * 298.51655 * 10 9 7 30 30 H 1.09004 * 110.75809 * 221.08416 * 11 10 9 31 31 H 1.08991 * 110.76895 * 97.68928 * 11 10 9 32 32 H 1.08995 * 113.54279 * 338.27020 * 13 12 11 33 33 H 1.08998 * 113.54265 * 207.65791 * 13 12 11 34 34 H 1.08002 * 120.07424 * 0.03003 * 18 17 15 35 35 H 1.08008 * 119.87140 * 179.97438 * 21 19 18 36 36 H 1.08001 * 120.05729 * 180.30106 * 24 22 21 37 37 H 1.09004 * 113.54120 * 88.99489 * 25 14 13 38 38 H 1.08997 * 113.54824 * 219.60656 * 25 14 13 39 39 H 1.08999 * 110.40869 * 83.52241 * 26 9 7 40 40 H 1.09004 * 110.40762 * 321.09664 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 -0.1388 -2.5312 -0.0005 11 6 -0.4549 -4.0446 -0.0241 12 6 0.8477 -4.6532 -0.5621 13 6 1.0384 -6.1475 -0.3763 14 7 0.4487 -6.3265 -1.7152 15 6 -0.2150 -7.3089 -2.3562 16 8 -0.3952 -8.3787 -1.8079 17 6 -0.7240 -7.0853 -3.7263 18 6 -0.3822 -5.9231 -4.4195 19 6 -0.8606 -5.7202 -5.6998 20 9 -0.5315 -4.5957 -6.3725 21 6 -1.6783 -6.6677 -6.2946 22 6 -2.0200 -7.8218 -5.6112 23 17 -3.0455 -9.0028 -6.3643 24 6 -1.5427 -8.0382 -4.3335 25 6 0.9014 -4.9639 -2.0484 26 6 1.9366 -3.7334 0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5572 -2.0515 -0.8854 29 1 -0.5557 -2.0797 0.8998 30 1 -1.2865 -4.2552 -0.6967 31 1 -0.6665 -4.4110 0.9804 32 1 0.4319 -6.5673 0.4262 33 1 2.0842 -6.4490 -0.3173 34 1 0.2554 -5.1845 -3.9566 35 1 -2.0505 -6.5050 -7.2954 36 1 -1.8062 -8.9415 -3.8033 37 1 1.9088 -4.9291 -2.4632 38 1 0.1814 -4.3983 -2.6397 39 1 2.1987 -4.0318 1.0156 40 1 2.8176 -3.7507 -0.6410 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073009761.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:49 Heat of formation + Delta-G solvation = 4.967312 kcal Electronic energy + Delta-G solvation = -26593.501713 eV Core-core repulsion = 22543.649003 eV Total energy + Delta-G solvation = -4049.852711 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.11367 -42.20944 -40.53632 -39.14552 -37.58099 -37.35857 -34.15617 -32.83663 -31.71866 -31.11759 -30.17642 -27.61748 -27.37274 -25.86105 -24.59926 -23.80444 -22.12744 -21.16616 -19.96711 -18.92576 -18.71007 -18.21027 -17.51298 -17.14038 -16.97228 -16.94130 -16.65037 -16.60966 -16.04549 -15.67788 -15.60461 -15.05306 -14.68299 -14.36051 -14.21864 -14.11681 -13.74249 -13.70908 -13.37701 -13.20980 -13.04176 -12.82244 -12.70680 -12.50315 -12.21026 -12.17680 -12.06086 -11.94902 -11.82570 -11.69051 -11.22936 -11.00005 -10.64095 -10.32530 -9.99023 -9.80637 -8.83129 -7.79482 -5.13856 -0.63048 -0.25340 0.77942 1.45982 1.50617 1.52522 1.58583 1.62035 2.36603 2.53998 2.85555 3.09701 3.27117 3.43156 3.56000 3.59231 3.73005 3.76229 3.84672 3.93145 4.03895 4.21414 4.36178 4.43924 4.44951 4.56820 4.62699 4.65740 4.70841 4.80180 4.85652 4.88028 4.95835 5.04340 5.17222 5.21891 5.38284 5.52789 5.69980 5.82508 6.24560 6.50798 6.88061 7.15713 7.83606 8.47272 9.30617 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.002869 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.768895 B = 9757.205738 C =10890.634768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.973 3.027 4 H -0.276 1.276 5 H -0.300 1.300 6 H -0.279 1.279 7 C -0.234 4.234 8 H 0.087 0.913 9 N -0.625 5.625 10 C 0.189 3.811 11 C -0.103 4.103 12 C -0.099 4.099 13 C 0.130 3.870 14 N -0.634 5.634 15 C 0.586 3.414 16 O -0.569 6.569 17 C -0.095 4.095 18 C -0.129 4.129 19 C 0.103 3.897 20 F -0.131 7.131 21 C -0.112 4.112 22 C -0.017 4.017 23 Cl -0.038 7.038 24 C -0.064 4.064 25 C 0.111 3.889 26 C 0.152 3.848 27 H 0.244 0.756 28 H 0.013 0.987 29 H 0.003 0.997 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.163 0.837 35 H 0.174 0.826 36 H 0.153 0.847 37 H 0.117 0.883 38 H 0.086 0.914 39 H 0.037 0.963 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.835 -16.607 -11.967 20.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.260 4.260 3 Si 0.802 3.198 4 H -0.202 1.202 5 H -0.227 1.227 6 H -0.205 1.205 7 C -0.363 4.363 8 H 0.105 0.895 9 N -0.351 5.351 10 C 0.064 3.936 11 C -0.142 4.142 12 C -0.101 4.101 13 C 0.008 3.992 14 N -0.366 5.366 15 C 0.377 3.623 16 O -0.450 6.450 17 C -0.099 4.099 18 C -0.148 4.148 19 C 0.084 3.916 20 F -0.109 7.109 21 C -0.131 4.131 22 C -0.044 4.044 23 Cl -0.009 7.009 24 C -0.084 4.084 25 C -0.010 4.010 26 C 0.026 3.974 27 H 0.053 0.947 28 H 0.031 0.969 29 H 0.022 0.978 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.133 0.867 34 H 0.180 0.820 35 H 0.192 0.808 36 H 0.171 0.829 37 H 0.135 0.865 38 H 0.104 0.896 39 H 0.054 0.946 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.150 -17.187 -11.871 20.999 hybrid contribution 0.080 1.449 0.003 1.451 sum -2.071 -15.738 -11.868 19.820 Atomic orbital electron populations 1.70169 1.06252 1.25095 1.58641 1.25581 0.96477 1.00861 1.03048 0.85230 0.77115 0.79238 0.78210 1.20184 1.22668 1.20521 1.19415 0.91092 0.83519 1.42312 0.89537 1.44805 1.02126 1.01101 1.87103 1.20920 0.84015 0.90986 0.97688 1.22282 0.95590 0.95361 1.00932 1.21977 0.97672 0.94385 0.96046 1.22871 1.00249 0.91949 0.84157 1.49620 1.53895 1.15660 1.17462 1.17684 0.77791 0.81888 0.84899 1.90772 1.60387 1.25401 1.68430 1.19464 1.00949 0.95476 0.93984 1.22156 1.00850 0.98161 0.93640 1.17337 0.98991 0.84442 0.90858 1.91573 1.90952 1.48755 1.79645 1.21397 0.97505 0.91712 1.02517 1.20419 0.97819 0.92508 0.93607 1.98408 1.65383 1.55915 1.81177 1.21234 0.94580 0.99460 0.93124 1.23235 1.01548 0.79403 0.96852 1.21307 0.94218 0.83511 0.98323 0.94656 0.96921 0.97834 0.91195 0.90649 0.89791 0.86748 0.81955 0.80811 0.82934 0.86497 0.89577 0.94571 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.65 10.30 21.65 0.22 -55.43 16 2 C -0.07 -3.65 5.49 84.86 0.47 -3.19 16 3 Si 0.97 44.24 29.55 68.60 2.03 46.26 16 4 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.23 -12.26 10.28 84.03 0.86 -11.39 16 8 H 0.09 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.62 -29.19 3.41 -693.50 -2.36 -31.56 16 10 C 0.19 8.73 5.39 86.81 0.47 9.19 16 11 C -0.10 -3.45 6.40 31.32 0.20 -3.25 16 12 C -0.10 -2.76 1.06 -52.67 -0.06 -2.82 16 13 C 0.13 2.98 8.03 83.67 0.67 3.65 16 14 N -0.63 -15.71 3.70 -862.34 -3.19 -18.90 16 15 C 0.59 16.03 8.00 86.79 0.69 16.72 16 16 O -0.57 -18.84 17.14 -3.89 -0.07 -18.91 16 17 C -0.10 -2.19 5.87 -20.10 -0.12 -2.31 16 18 C -0.13 -2.73 9.16 22.58 0.21 -2.52 16 19 C 0.10 2.04 7.29 22.33 0.16 2.20 16 20 F -0.13 -2.83 17.26 44.97 0.78 -2.05 16 21 C -0.11 -1.83 9.80 22.39 0.22 -1.61 16 22 C -0.02 -0.29 6.31 22.28 0.14 -0.15 16 23 Cl -0.04 -0.58 28.95 -2.72 -0.08 -0.66 16 24 C -0.06 -1.32 9.37 22.55 0.21 -1.11 16 25 C 0.11 2.66 5.79 83.72 0.48 3.15 16 26 C 0.15 5.14 6.71 86.22 0.58 5.72 16 27 H 0.24 14.08 8.31 -92.71 -0.77 13.31 16 28 H 0.01 0.66 7.39 -2.39 -0.02 0.64 16 29 H 0.00 0.18 7.49 -2.39 -0.02 0.16 16 30 H 0.07 2.21 8.07 -2.38 -0.02 2.19 16 31 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.08 1.94 8.13 -2.39 -0.02 1.93 16 33 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.16 3.35 3.86 -2.91 -0.01 3.34 16 35 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.15 3.14 7.67 -2.91 -0.02 3.12 16 37 H 0.12 2.33 8.07 -2.38 -0.02 2.31 16 38 H 0.09 2.16 6.22 -2.39 -0.01 2.14 16 39 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 1.85 8.01 -2.39 -0.02 1.83 16 Total: -1.00 -65.92 350.10 3.61 -62.31 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 1.08 Total: 6.66 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 5.19 Total: 12.27 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -5.33 Total: -105.88 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.07 Total: -18.91 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.78 Total: -2.05 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.08 Total: -0.66 kcal Total: -65.92 3.61 -62.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073009761.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.277 kcal (2) G-P(sol) polarization free energy of solvation -65.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds