Wall clock time and date at job start Tue Mar 31 2020 20:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00285 * 2 1 4 4 H 1.48500 * 109.47219 * 239.99766 * 3 2 1 5 5 H 1.48502 * 109.46646 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47496 * 119.99276 * 3 2 1 7 7 C 1.38817 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00434 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99546 * 0.02562 * 7 2 1 10 10 C 1.47148 * 125.57981 * 359.97052 * 9 7 2 11 11 C 1.54632 * 107.37548 * 179.10844 * 10 9 7 12 12 C 1.53510 * 102.70598 * 339.38836 * 11 10 9 13 13 C 1.51778 * 117.00419 * 164.16397 * 12 11 10 14 14 N 1.47390 * 87.51931 * 92.93095 * 13 12 11 15 15 C 1.34780 * 135.85064 * 205.67224 * 14 13 12 16 16 O 1.21558 * 120.00526 * 5.21287 * 15 14 13 17 17 C 1.47776 * 119.99487 * 185.22410 * 15 14 13 18 18 C 1.39604 * 120.14630 * 24.86946 * 17 15 14 19 19 C 1.38120 * 119.83789 * 179.97438 * 18 17 15 20 20 F 1.35104 * 119.93556 * 179.97438 * 19 18 17 21 21 C 1.38630 * 120.13260 * 359.97438 * 19 18 17 22 22 C 1.38235 * 120.28674 * 0.02562 * 21 19 18 23 23 C 1.38155 * 120.16501 * 359.97438 * 22 21 19 24 24 Cl 1.73600 * 120.06825 * 180.02562 * 23 22 21 25 25 C 1.47383 * 88.29189 * 25.92081 * 14 13 12 26 26 C 1.47754 * 125.58179 * 180.02562 * 9 7 2 27 27 H 0.96998 * 119.99584 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.86549 * 59.66416 * 10 9 7 29 29 H 1.08995 * 109.87166 * 298.55928 * 10 9 7 30 30 H 1.09004 * 110.76510 * 221.08186 * 11 10 9 31 31 H 1.09003 * 110.76572 * 97.69010 * 11 10 9 32 32 H 1.09007 * 113.54276 * 338.26757 * 13 12 11 33 33 H 1.09004 * 113.60894 * 207.60378 * 13 12 11 34 34 H 1.07993 * 120.08189 * 0.02562 * 18 17 15 35 35 H 1.08001 * 119.85316 * 180.02562 * 21 19 18 36 36 H 1.07999 * 119.91958 * 180.27199 * 22 21 19 37 37 H 1.08998 * 113.54432 * 88.74645 * 25 14 13 38 38 H 1.09010 * 113.54473 * 219.42133 * 25 14 13 39 39 H 1.09003 * 110.40356 * 83.47811 * 26 9 7 40 40 H 1.09005 * 110.40235 * 321.05514 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1389 -2.5311 0.0006 11 6 -0.4551 -4.0446 -0.0224 12 6 0.8471 -4.6534 -0.5611 13 6 1.0379 -6.1476 -0.3751 14 7 0.4463 -6.3249 -1.7134 15 6 -0.2200 -7.3059 -2.3539 16 8 -0.5332 -8.3178 -1.7576 17 6 -0.5697 -7.1513 -3.7814 18 6 0.1813 -6.3054 -4.5995 19 6 -0.1508 -6.1661 -5.9330 20 9 0.5744 -5.3477 -6.7264 21 6 -1.2267 -6.8645 -6.4588 22 6 -1.9740 -7.7035 -5.6535 23 6 -1.6525 -7.8519 -4.3181 24 17 -2.5922 -8.9067 -3.3092 25 6 0.9059 -4.9652 -2.0483 26 6 1.9364 -3.7334 0.0016 27 1 -0.4849 0.8401 -0.0004 28 1 -0.5580 -2.0517 -0.8841 29 1 -0.5552 -2.0794 0.9010 30 1 -1.2872 -4.2554 -0.6942 31 1 -0.6660 -4.4106 0.9824 32 1 0.4320 -6.5673 0.4280 33 1 2.0835 -6.4504 -0.3176 34 1 1.0204 -5.7620 -4.1911 35 1 -1.4821 -6.7525 -7.5022 36 1 -2.8083 -8.2481 -6.0703 37 1 1.9148 -4.9357 -2.4599 38 1 0.1897 -4.3975 -2.6425 39 1 2.1983 -4.0310 1.0170 40 1 2.8175 -3.7513 -0.6399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073009807.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:58 Heat of formation + Delta-G solvation = 21.282047 kcal Electronic energy + Delta-G solvation = -26786.577826 eV Core-core repulsion = 22737.432576 eV Total energy + Delta-G solvation = -4049.145251 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.24295 -40.95746 -39.51223 -37.87497 -36.58079 -35.72029 -32.52187 -31.85355 -30.58590 -29.50190 -28.70840 -26.16317 -26.02206 -24.38277 -23.50864 -22.81994 -20.38659 -20.01360 -18.60474 -17.81688 -17.26073 -16.97793 -16.70435 -16.23938 -15.98654 -15.75260 -15.46674 -14.85646 -14.58757 -14.22818 -14.02795 -13.94326 -13.67278 -13.18495 -13.13864 -12.84913 -12.46629 -12.32265 -12.01935 -11.93304 -11.83272 -11.50074 -11.25020 -11.04510 -10.94010 -10.70460 -10.47097 -10.20539 -10.16150 -9.91059 -9.74155 -9.63636 -9.59589 -8.94763 -8.63148 -8.61959 -6.88047 -5.74636 -3.08660 0.27576 0.59269 1.85990 2.50565 2.70885 3.25232 3.38495 3.43134 3.44295 3.73853 4.07766 4.23345 4.41024 4.48950 4.59876 4.72273 4.88476 4.98403 5.17123 5.24687 5.39748 5.45313 5.46771 5.54707 5.58123 5.58369 5.61970 5.75510 5.76710 5.84931 6.09704 6.18987 6.22390 6.41458 6.47733 6.60887 6.65715 7.51597 7.57648 7.67985 7.78740 8.05596 8.21140 9.17822 9.77927 10.43150 11.36785 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.014637 B = 0.003171 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.438453 B = 8826.829927 C = 9863.745297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.117 4.117 12 C -0.104 4.104 13 C 0.122 3.878 14 N -0.636 5.636 15 C 0.581 3.419 16 O -0.518 6.518 17 C -0.089 4.089 18 C -0.111 4.111 19 C 0.099 3.901 20 F -0.129 7.129 21 C -0.121 4.121 22 C -0.091 4.091 23 C -0.002 4.002 24 Cl -0.029 7.029 25 C 0.113 3.887 26 C 0.154 3.846 27 H 0.253 0.747 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.028 0.972 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.580 -15.809 -11.350 19.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.155 4.155 12 C -0.106 4.106 13 C 0.000 4.000 14 N -0.371 5.371 15 C 0.370 3.630 16 O -0.395 6.395 17 C -0.093 4.093 18 C -0.130 4.130 19 C 0.080 3.920 20 F -0.108 7.108 21 C -0.140 4.140 22 C -0.110 4.110 23 C -0.030 4.030 24 Cl 0.001 6.999 25 C -0.010 4.010 26 C 0.027 3.973 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.170 0.830 35 H 0.167 0.833 36 H 0.168 0.832 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.045 0.955 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.989 -16.348 -11.063 19.965 hybrid contribution 0.551 1.064 -0.212 1.217 sum -2.437 -15.284 -11.275 19.149 Atomic orbital electron populations 1.69946 1.04888 1.25200 1.56823 1.24791 0.95689 0.97650 1.02118 0.86213 0.78470 0.83236 0.77903 1.21162 1.21622 1.21169 1.18996 0.90406 0.82322 1.44160 0.90431 1.44531 1.01571 0.99647 1.87360 1.21227 0.84249 0.87806 1.01227 1.22476 0.94111 0.99206 0.99744 1.22185 1.00196 0.93444 0.94739 1.22815 0.98385 0.94300 0.84486 1.49689 1.54335 1.15940 1.17128 1.17395 0.78563 0.82051 0.85012 1.90848 1.53521 1.28045 1.67048 1.19605 0.96432 0.98514 0.94710 1.21496 1.01194 0.98230 0.92096 1.17562 0.92725 0.93074 0.88642 1.91564 1.76152 1.69911 1.73155 1.21290 0.94454 0.96697 1.01581 1.20901 1.00431 0.98703 0.90933 1.21023 0.94162 0.95532 0.92325 1.98426 1.70295 1.63094 1.68122 1.23048 0.99963 0.79820 0.98128 1.21141 0.93105 0.85731 0.97317 0.93672 0.93523 0.93758 0.92091 0.91675 0.90107 0.89454 0.82995 0.83276 0.83219 0.89253 0.89832 0.95470 0.93918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.24 10.30 55.49 0.57 -25.67 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.46 29.55 -169.99 -5.02 16.43 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.12 10.28 -15.06 -0.15 -6.27 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.60 -14.41 3.41 -170.52 -0.58 -14.99 16 10 C 0.18 4.12 5.39 -2.83 -0.02 4.10 16 11 C -0.12 -2.07 6.40 -25.61 -0.16 -2.23 16 12 C -0.10 -1.61 1.06 -155.21 -0.16 -1.78 16 13 C 0.12 1.64 8.03 -7.49 -0.06 1.58 16 14 N -0.64 -8.94 3.65 -186.91 -0.68 -9.62 16 15 C 0.58 8.71 7.71 -12.36 -0.10 8.62 16 16 O -0.52 -9.03 15.31 5.31 0.08 -8.95 16 17 C -0.09 -1.13 5.83 -104.95 -0.61 -1.74 16 18 C -0.11 -1.25 8.85 -39.12 -0.35 -1.59 16 19 C 0.10 1.02 7.29 -39.48 -0.29 0.73 16 20 F -0.13 -1.42 17.26 2.25 0.04 -1.38 16 21 C -0.12 -0.99 10.02 -39.44 -0.40 -1.39 16 22 C -0.09 -0.78 9.81 -39.61 -0.39 -1.17 16 23 C 0.00 -0.03 6.34 -39.07 -0.25 -0.27 16 24 Cl -0.03 -0.36 26.35 -51.86 -1.37 -1.73 16 25 C 0.11 1.54 5.47 -7.35 -0.04 1.50 16 26 C 0.15 2.82 6.70 -3.21 -0.02 2.80 16 27 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.05 1.19 7.39 -51.93 -0.38 0.81 16 29 H 0.04 1.14 7.49 -51.93 -0.39 0.76 16 30 H 0.06 1.04 8.07 -51.93 -0.42 0.62 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.08 1.10 8.13 -51.92 -0.42 0.68 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.15 1.62 5.67 -52.49 -0.30 1.33 16 35 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 36 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.09 1.07 7.79 -51.93 -0.40 0.67 16 38 H 0.08 1.19 7.84 -51.92 -0.41 0.79 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.04 0.74 8.01 -51.93 -0.42 0.33 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -30.96 348.90 -9.59 -40.55 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -4.80 Total: -2.55 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -3.09 Total: 2.63 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.69 Total: -50.27 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.08 Total: -8.95 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.37 Total: -1.73 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.96 -9.59 -40.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073009807.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.837 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds