Wall clock time and date at job start Tue Mar 31 2020 20:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00285 * 2 1 4 4 H 1.48500 * 109.47219 * 239.99766 * 3 2 1 5 5 H 1.48502 * 109.46646 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47496 * 119.99276 * 3 2 1 7 7 C 1.38817 * 120.00323 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00434 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99546 * 0.02562 * 7 2 1 10 10 C 1.47148 * 125.57981 * 359.97052 * 9 7 2 11 11 C 1.54632 * 107.37548 * 179.10844 * 10 9 7 12 12 C 1.53510 * 102.70598 * 339.38836 * 11 10 9 13 13 C 1.51778 * 117.00419 * 164.16397 * 12 11 10 14 14 N 1.47390 * 87.51931 * 92.93095 * 13 12 11 15 15 C 1.34780 * 135.85064 * 205.67224 * 14 13 12 16 16 O 1.21558 * 120.00526 * 5.21287 * 15 14 13 17 17 C 1.47776 * 119.99487 * 185.22410 * 15 14 13 18 18 C 1.39604 * 120.14630 * 24.86946 * 17 15 14 19 19 C 1.38120 * 119.83789 * 179.97438 * 18 17 15 20 20 F 1.35104 * 119.93556 * 179.97438 * 19 18 17 21 21 C 1.38630 * 120.13260 * 359.97438 * 19 18 17 22 22 C 1.38235 * 120.28674 * 0.02562 * 21 19 18 23 23 C 1.38155 * 120.16501 * 359.97438 * 22 21 19 24 24 Cl 1.73600 * 120.06825 * 180.02562 * 23 22 21 25 25 C 1.47383 * 88.29189 * 25.92081 * 14 13 12 26 26 C 1.47754 * 125.58179 * 180.02562 * 9 7 2 27 27 H 0.96998 * 119.99584 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.86549 * 59.66416 * 10 9 7 29 29 H 1.08995 * 109.87166 * 298.55928 * 10 9 7 30 30 H 1.09004 * 110.76510 * 221.08186 * 11 10 9 31 31 H 1.09003 * 110.76572 * 97.69010 * 11 10 9 32 32 H 1.09007 * 113.54276 * 338.26757 * 13 12 11 33 33 H 1.09004 * 113.60894 * 207.60378 * 13 12 11 34 34 H 1.07993 * 120.08189 * 0.02562 * 18 17 15 35 35 H 1.08001 * 119.85316 * 180.02562 * 21 19 18 36 36 H 1.07999 * 119.91958 * 180.27199 * 22 21 19 37 37 H 1.08998 * 113.54432 * 88.74645 * 25 14 13 38 38 H 1.09010 * 113.54473 * 219.42133 * 25 14 13 39 39 H 1.09003 * 110.40356 * 83.47811 * 26 9 7 40 40 H 1.09005 * 110.40235 * 321.05514 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1389 -2.5311 0.0006 11 6 -0.4551 -4.0446 -0.0224 12 6 0.8471 -4.6534 -0.5611 13 6 1.0379 -6.1476 -0.3751 14 7 0.4463 -6.3249 -1.7134 15 6 -0.2200 -7.3059 -2.3539 16 8 -0.5332 -8.3178 -1.7576 17 6 -0.5697 -7.1513 -3.7814 18 6 0.1813 -6.3054 -4.5995 19 6 -0.1508 -6.1661 -5.9330 20 9 0.5744 -5.3477 -6.7264 21 6 -1.2267 -6.8645 -6.4588 22 6 -1.9740 -7.7035 -5.6535 23 6 -1.6525 -7.8519 -4.3181 24 17 -2.5922 -8.9067 -3.3092 25 6 0.9059 -4.9652 -2.0483 26 6 1.9364 -3.7334 0.0016 27 1 -0.4849 0.8401 -0.0004 28 1 -0.5580 -2.0517 -0.8841 29 1 -0.5552 -2.0794 0.9010 30 1 -1.2872 -4.2554 -0.6942 31 1 -0.6660 -4.4106 0.9824 32 1 0.4320 -6.5673 0.4280 33 1 2.0835 -6.4504 -0.3176 34 1 1.0204 -5.7620 -4.1911 35 1 -1.4821 -6.7525 -7.5022 36 1 -2.8083 -8.2481 -6.0703 37 1 1.9148 -4.9357 -2.4599 38 1 0.1897 -4.3975 -2.6425 39 1 2.1983 -4.0310 1.0170 40 1 2.8175 -3.7513 -0.6399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073009807.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:58 Heat of formation + Delta-G solvation = 3.907373 kcal Electronic energy + Delta-G solvation = -26787.331249 eV Core-core repulsion = 22737.432576 eV Total energy + Delta-G solvation = -4049.898673 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.05127 -42.11694 -40.50267 -38.98922 -37.50220 -37.27110 -34.15125 -32.95870 -31.39152 -31.11915 -30.16282 -27.55549 -27.26006 -25.82768 -24.66361 -23.68382 -22.13480 -21.10659 -19.91108 -18.82546 -18.63459 -18.12277 -17.72075 -17.22515 -16.95345 -16.80079 -16.61026 -16.56436 -15.98849 -15.60424 -15.18096 -15.06360 -14.65032 -14.31290 -14.11763 -14.05627 -13.75433 -13.69323 -13.54321 -13.34137 -12.88704 -12.73245 -12.68726 -12.37700 -12.26991 -12.21611 -12.06028 -11.86741 -11.81069 -11.63813 -11.22891 -10.82939 -10.64846 -10.41989 -9.84577 -9.68488 -8.84199 -7.80005 -5.14768 -0.55617 -0.18107 1.00189 1.50121 1.52378 1.55939 1.58460 1.63916 2.35600 2.53617 2.89720 3.16377 3.30594 3.42320 3.43620 3.59098 3.81170 3.81590 3.93854 4.03770 4.15446 4.21046 4.40919 4.48608 4.51363 4.60208 4.66018 4.68266 4.76530 4.82790 4.84231 4.89386 4.97413 5.04086 5.16416 5.21038 5.48104 5.51774 5.68407 5.80795 6.23497 6.55804 6.94523 7.14736 7.82588 8.46721 9.30234 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.014637 B = 0.003171 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.438453 B = 8826.829927 C = 9863.745297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.066 4.066 3 Si 0.974 3.026 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.279 1.279 7 C -0.237 4.237 8 H 0.087 0.913 9 N -0.625 5.625 10 C 0.191 3.809 11 C -0.103 4.103 12 C -0.099 4.099 13 C 0.130 3.870 14 N -0.636 5.636 15 C 0.578 3.422 16 O -0.549 6.549 17 C -0.110 4.110 18 C -0.114 4.114 19 C 0.090 3.910 20 F -0.134 7.134 21 C -0.102 4.102 22 C -0.080 4.080 23 C -0.015 4.015 24 Cl -0.044 7.044 25 C 0.119 3.881 26 C 0.152 3.848 27 H 0.244 0.756 28 H 0.011 0.989 29 H 0.004 0.996 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.154 0.846 35 H 0.185 0.815 36 H 0.181 0.819 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.036 0.964 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.598 -16.998 -13.099 21.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.259 4.259 3 Si 0.803 3.197 4 H -0.201 1.201 5 H -0.226 1.226 6 H -0.205 1.205 7 C -0.366 4.366 8 H 0.105 0.895 9 N -0.352 5.352 10 C 0.066 3.934 11 C -0.141 4.141 12 C -0.101 4.101 13 C 0.008 3.992 14 N -0.370 5.370 15 C 0.369 3.631 16 O -0.428 6.428 17 C -0.114 4.114 18 C -0.133 4.133 19 C 0.071 3.929 20 F -0.113 7.113 21 C -0.121 4.121 22 C -0.099 4.099 23 C -0.043 4.043 24 Cl -0.015 7.015 25 C -0.003 4.003 26 C 0.027 3.973 27 H 0.054 0.946 28 H 0.030 0.970 29 H 0.022 0.978 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.133 0.867 34 H 0.171 0.829 35 H 0.202 0.798 36 H 0.199 0.801 37 H 0.132 0.868 38 H 0.094 0.906 39 H 0.054 0.946 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.970 -17.562 -12.814 21.829 hybrid contribution 0.259 1.419 0.299 1.473 sum -1.711 -16.143 -12.515 20.497 Atomic orbital electron populations 1.70178 1.06317 1.25118 1.58590 1.25592 0.96464 1.00892 1.02927 0.85214 0.77117 0.79141 0.78238 1.20140 1.22590 1.20474 1.19439 0.91129 0.83533 1.42471 0.89481 1.44813 1.02092 1.01145 1.87113 1.20897 0.84062 0.90876 0.97604 1.22255 0.95629 0.95462 1.00737 1.22004 0.97521 0.94399 0.96189 1.22842 0.99997 0.91977 0.84372 1.49664 1.54185 1.15852 1.17318 1.17738 0.77948 0.81600 0.85863 1.90824 1.54783 1.29196 1.68023 1.19494 0.97881 1.00338 0.93721 1.21483 1.01170 0.98060 0.92621 1.17727 0.93412 0.93458 0.88321 1.91556 1.76430 1.70161 1.73130 1.21674 0.92685 0.94690 1.03045 1.21252 1.00870 0.98234 0.89518 1.21273 0.94089 0.95565 0.93365 1.98418 1.70572 1.63604 1.68871 1.23070 1.01110 0.79420 0.96652 1.21313 0.94204 0.83517 0.98253 0.94638 0.97045 0.97811 0.91550 0.90778 0.90127 0.86705 0.82886 0.79799 0.80134 0.86845 0.90586 0.94630 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.31 10.30 21.65 0.22 -56.09 16 2 C -0.07 -3.64 5.49 84.86 0.47 -3.18 16 3 Si 0.97 44.56 29.55 68.60 2.03 46.59 16 4 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.24 -12.58 10.28 84.03 0.86 -11.72 16 8 H 0.09 4.35 7.83 -2.91 -0.02 4.32 16 9 N -0.63 -29.92 3.41 -693.39 -2.36 -32.29 16 10 C 0.19 9.07 5.39 86.81 0.47 9.53 16 11 C -0.10 -3.61 6.40 31.32 0.20 -3.41 16 12 C -0.10 -2.94 1.06 -52.62 -0.06 -2.99 16 13 C 0.13 3.19 8.03 83.66 0.67 3.86 16 14 N -0.64 -16.85 3.65 -863.52 -3.15 -20.01 16 15 C 0.58 16.81 7.71 86.77 0.67 17.48 16 16 O -0.55 -18.89 15.31 -3.90 -0.06 -18.95 16 17 C -0.11 -2.69 5.83 -20.07 -0.12 -2.81 16 18 C -0.11 -2.39 8.85 22.57 0.20 -2.19 16 19 C 0.09 1.64 7.29 22.34 0.16 1.80 16 20 F -0.13 -2.66 17.26 44.97 0.78 -1.89 16 21 C -0.10 -1.31 10.02 22.36 0.22 -1.09 16 22 C -0.08 -1.13 9.81 22.25 0.22 -0.92 16 23 C -0.01 -0.32 6.34 22.60 0.14 -0.18 16 24 Cl -0.04 -1.07 26.35 -2.72 -0.07 -1.14 16 25 C 0.12 3.07 5.47 83.76 0.46 3.53 16 26 C 0.15 5.35 6.70 86.23 0.58 5.93 16 27 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 28 H 0.01 0.61 7.39 -2.39 -0.02 0.59 16 29 H 0.00 0.20 7.49 -2.39 -0.02 0.18 16 30 H 0.07 2.26 8.07 -2.38 -0.02 2.24 16 31 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.08 2.03 8.13 -2.38 -0.02 2.01 16 33 H 0.12 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.15 3.05 5.67 -2.91 -0.02 3.03 16 35 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 36 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 37 H 0.11 2.40 7.79 -2.39 -0.02 2.39 16 38 H 0.08 2.10 7.84 -2.38 -0.02 2.08 16 39 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.06 1.91 8.01 -2.38 -0.02 1.89 16 Total: -1.00 -69.47 348.90 3.60 -65.87 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: 1.08 Total: 4.26 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 5.15 Total: 13.64 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -5.30 Total: -108.39 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.06 Total: -18.95 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.78 Total: -1.89 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.07 Total: -1.14 kcal Total: -69.47 3.60 -65.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073009807.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.779 kcal (2) G-P(sol) polarization free energy of solvation -69.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds