Wall clock time and date at job start Tue Mar 31 2020 20:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99951 * 2 1 4 4 H 1.48497 * 109.46717 * 274.98336 * 3 2 1 5 5 H 1.48503 * 109.46844 * 34.98374 * 3 2 1 6 6 H 1.48497 * 109.46937 * 154.98368 * 3 2 1 7 7 C 1.38811 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00160 * 173.13622 * 7 2 1 9 9 N 1.36944 * 119.99912 * 353.13376 * 7 2 1 10 10 C 1.47144 * 125.57899 * 6.05999 * 9 7 2 11 11 C 1.54633 * 107.37521 * 179.06366 * 10 9 7 12 12 C 1.53509 * 102.70483 * 339.38437 * 11 10 9 13 13 C 1.51782 * 117.00163 * 164.16466 * 12 11 10 14 14 N 1.47395 * 87.51665 * 92.93155 * 13 12 11 15 15 C 1.34776 * 135.85043 * 205.66711 * 14 13 12 16 16 O 1.21565 * 120.00135 * 5.51292 * 15 14 13 17 17 C 1.47795 * 120.00038 * 185.50968 * 15 14 13 18 18 C 1.39627 * 120.11755 * 6.69178 * 17 15 14 19 19 C 1.37889 * 119.91529 * 179.97438 * 18 17 15 20 20 C 1.38488 * 120.15807 * 0.02562 * 19 18 17 21 21 Cl 1.73601 * 119.87433 * 179.97438 * 20 19 18 22 22 C 1.38696 * 120.24144 * 359.96996 * 20 19 18 23 23 F 1.35103 * 119.95528 * 180.02562 * 22 20 19 24 24 C 1.38124 * 120.08368 * 0.02562 * 22 20 19 25 25 C 1.47385 * 88.29348 * 25.91790 * 14 13 12 26 26 C 1.47755 * 125.58029 * 186.03023 * 9 7 2 27 27 H 0.96997 * 119.99856 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.86588 * 59.61517 * 10 9 7 29 29 H 1.08998 * 109.86322 * 298.51132 * 10 9 7 30 30 H 1.08993 * 110.76391 * 221.07926 * 11 10 9 31 31 H 1.08999 * 110.75954 * 97.68684 * 11 10 9 32 32 H 1.08994 * 113.54474 * 338.26477 * 13 12 11 33 33 H 1.08998 * 113.60314 * 207.59742 * 13 12 11 34 34 H 1.07998 * 120.04315 * 359.97438 * 18 17 15 35 35 H 1.07994 * 119.92299 * 180.27653 * 19 18 17 36 36 H 1.08006 * 120.08212 * 180.02562 * 24 22 20 37 37 H 1.09006 * 113.54400 * 88.74616 * 25 14 13 38 38 H 1.09007 * 113.54548 * 219.42096 * 25 14 13 39 39 H 1.09001 * 110.40527 * 83.52559 * 26 9 7 40 40 H 1.09001 * 110.40449 * 321.10882 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6200 0.8028 6 1 3.5964 1.4121 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0845 -1.2055 -0.1112 9 7 1.3330 -2.3838 0.1429 10 6 -0.1305 -2.5330 0.1773 11 6 -0.4375 -4.0410 0.3280 12 6 0.8619 -4.7000 -0.1555 13 6 1.0641 -6.1631 0.1944 14 7 0.4576 -6.4921 -1.1081 15 6 -0.2101 -7.5418 -1.6264 16 8 -0.5146 -8.4796 -0.9153 17 6 -0.5723 -7.5528 -3.0592 18 6 -0.1052 -6.5471 -3.9077 19 6 -0.4452 -6.5618 -5.2439 20 6 -1.2493 -7.5712 -5.7462 21 17 -1.6734 -7.5821 -7.4296 22 6 -1.7169 -8.5735 -4.9093 23 9 -2.5006 -9.5558 -5.4055 24 6 -1.3824 -8.5687 -3.5692 25 6 0.9048 -5.1763 -1.5990 26 6 1.9521 -3.7177 0.2864 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5630 -2.1578 -0.7502 29 1 -0.5387 -1.9852 1.0266 30 1 -1.2762 -4.3298 -0.3055 31 1 -0.6342 -4.2930 1.3700 32 1 0.4705 -6.4930 1.0469 33 1 2.1121 -6.4524 0.2721 34 1 0.5216 -5.7588 -3.5179 35 1 -0.0803 -5.7864 -5.9012 36 1 -1.7461 -9.3494 -2.9175 37 1 1.9085 -5.1882 -2.0240 38 1 0.1781 -4.6822 -2.2440 39 1 2.2284 -3.8986 1.3251 40 1 2.8253 -3.8029 -0.3604 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073011019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:29 Heat of formation + Delta-G solvation = 19.876029 kcal Electronic energy + Delta-G solvation = -26405.359301 eV Core-core repulsion = 22356.153081 eV Total energy + Delta-G solvation = -4049.206220 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.30932 -41.08411 -39.51090 -38.07301 -36.86108 -35.81181 -32.43403 -31.56397 -31.22634 -29.48952 -28.73692 -26.32920 -26.06851 -24.30598 -23.28790 -23.21200 -20.43139 -20.05451 -18.72436 -18.01098 -17.34949 -17.01833 -16.67108 -16.17462 -16.05973 -15.89021 -15.62883 -14.87668 -14.46207 -14.41460 -14.03904 -13.84293 -13.76094 -13.30351 -13.24883 -12.88322 -12.49831 -12.35570 -12.16266 -12.00356 -11.91815 -11.82149 -11.34576 -11.05652 -11.02025 -10.73861 -10.56767 -10.33917 -10.17569 -9.98527 -9.81521 -9.70042 -9.48485 -9.16017 -8.72722 -8.64388 -6.91457 -5.79905 -3.12854 0.15138 0.64685 1.54909 2.40562 2.61385 3.31505 3.35054 3.41544 3.43187 3.62258 4.07263 4.20673 4.39162 4.47080 4.57458 4.68910 4.81847 4.98488 5.12404 5.19534 5.38510 5.41189 5.44803 5.46792 5.54978 5.58422 5.67648 5.68916 5.71733 5.81519 6.03702 6.13939 6.18266 6.36336 6.42213 6.55810 6.61526 7.46655 7.54614 7.59886 7.74762 7.96705 8.17011 9.13559 9.73947 10.39265 11.31957 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.002749 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.431337 B =10183.373475 C =11526.285154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.117 4.117 12 C -0.104 4.104 13 C 0.121 3.879 14 N -0.635 5.635 15 C 0.585 3.415 16 O -0.538 6.538 17 C -0.092 4.092 18 C -0.092 4.092 19 C -0.087 4.087 20 C -0.054 4.054 21 Cl -0.045 7.045 22 C 0.101 3.899 23 F -0.123 7.123 24 C -0.086 4.086 25 C 0.109 3.891 26 C 0.154 3.846 27 H 0.253 0.747 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.157 0.843 35 H 0.152 0.848 36 H 0.158 0.842 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.028 0.972 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.770 -15.025 -9.690 17.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.156 4.156 12 C -0.106 4.106 13 C -0.001 4.001 14 N -0.369 5.369 15 C 0.375 3.625 16 O -0.416 6.416 17 C -0.095 4.095 18 C -0.111 4.111 19 C -0.106 4.106 20 C -0.082 4.082 21 Cl -0.016 7.016 22 C 0.081 3.919 23 F -0.102 7.102 24 C -0.106 4.106 25 C -0.013 4.013 26 C 0.027 3.973 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.174 0.826 35 H 0.170 0.830 36 H 0.176 0.824 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.046 0.954 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.178 -15.508 -9.571 18.261 hybrid contribution 0.226 0.742 -0.391 0.869 sum -0.952 -14.765 -9.962 17.837 Atomic orbital electron populations 1.69963 1.04933 1.25156 1.56515 1.24814 0.95672 0.97675 1.01998 0.86152 0.78761 0.83669 0.77483 1.21676 1.21648 1.20613 1.19023 0.91088 0.82429 1.43397 0.90377 1.44534 1.01504 1.00894 1.86173 1.21242 0.84364 0.87924 1.01097 1.22479 0.94081 0.98878 1.00137 1.22200 1.00286 0.93370 0.94743 1.22839 0.98311 0.92674 0.86277 1.49652 1.53985 1.16579 1.16671 1.17488 0.78153 0.80701 0.86188 1.90791 1.55000 1.34868 1.60963 1.19844 0.99606 0.96029 0.94048 1.21986 0.98627 0.97930 0.92529 1.21012 0.96459 0.97245 0.95881 1.21281 1.02266 0.97868 0.86819 1.98405 1.92050 1.98214 1.12896 1.17182 0.95369 0.87708 0.91619 1.91564 1.71545 1.59376 1.87694 1.21191 0.97107 0.99480 0.92835 1.23141 1.00292 0.79810 0.98100 1.21136 0.92976 0.85379 0.97814 0.93694 0.93822 0.93450 0.92052 0.91616 0.90060 0.89324 0.82593 0.83015 0.82450 0.88867 0.89368 0.95391 0.93898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.60 10.35 55.49 0.57 -25.02 16 2 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 3 Si 0.91 21.01 29.56 -169.99 -5.02 15.98 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.23 -5.96 10.26 -15.06 -0.15 -6.12 16 8 H 0.08 1.94 7.84 -52.49 -0.41 1.53 16 9 N -0.60 -13.88 3.41 -170.54 -0.58 -14.46 16 10 C 0.18 3.94 5.40 -2.83 -0.02 3.92 16 11 C -0.12 -1.96 6.40 -25.61 -0.16 -2.13 16 12 C -0.10 -1.51 1.06 -155.22 -0.16 -1.67 16 13 C 0.12 1.52 8.03 -7.48 -0.06 1.46 16 14 N -0.64 -8.25 3.68 -186.87 -0.69 -8.93 16 15 C 0.58 8.25 8.00 -12.35 -0.10 8.15 16 16 O -0.54 -9.20 17.14 5.31 0.09 -9.11 16 17 C -0.09 -1.08 5.87 -104.97 -0.62 -1.70 16 18 C -0.09 -0.91 9.15 -39.19 -0.36 -1.27 16 19 C -0.09 -0.78 9.81 -39.62 -0.39 -1.17 16 20 C -0.05 -0.55 6.33 -39.32 -0.25 -0.79 16 21 Cl -0.04 -0.43 28.60 -51.86 -1.48 -1.91 16 22 C 0.10 1.10 7.26 -39.45 -0.29 0.82 16 23 F -0.12 -1.40 16.83 2.25 0.04 -1.36 16 24 C -0.09 -0.97 9.57 -39.12 -0.37 -1.35 16 25 C 0.11 1.33 5.43 -7.34 -0.04 1.29 16 26 C 0.15 2.69 6.70 -3.22 -0.02 2.66 16 27 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.04 1.07 7.55 -51.93 -0.39 0.68 16 29 H 0.05 1.19 7.36 -51.93 -0.38 0.81 16 30 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.16 1.40 4.17 -52.49 -0.22 1.18 16 35 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 36 H 0.16 1.73 7.66 -52.48 -0.40 1.33 16 37 H 0.09 0.97 8.04 -51.93 -0.42 0.55 16 38 H 0.09 1.07 6.83 -51.93 -0.35 0.72 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.04 0.70 8.00 -51.93 -0.42 0.29 16 LS Contribution 350.09 15.07 5.28 5.28 Total: -1.00 -30.10 350.09 -9.55 -39.64 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.66 Total: -1.98 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -3.09 Total: 1.88 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -0.69 Total: -48.42 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.48 Total: -1.91 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.10 -9.55 -39.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073011019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.517 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds